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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr10 | genome | chr10:1183264..1185967 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO10G03980.1 vs.
Match: EWM25603.1 (Ankyrin repeat-containing domain protein, partial [Nannochloropsis gaditana]) HSP 1 Score: 211.1 bits (536), Expect = 1.300e-50 Identity = 121/262 (46.18%), Postives = 159/262 (60.69%), Query Frame = 0
Query: 586 ALPPSLPPSLLPDAQGWSVIHHAAWQGKTSLLFSLLSSTSPFAFLQR----GPGGVTPLMLAAKGGHVEAVKLLVGIEEVRRVGRARDEKGRHALLDAWEGRNEGVVLPLLQCFGEEVGGR------------EGEAEAPSAAFLPLPTLNDLHWQTGRSLLHEAVKEEWKKVLKALLIMASATEGKGGTVDVNVRSGGWGV-GWGRGRTPMQLAVWRQDEEIGRMLWAREEVREEHRWDWMVRGWVWWRGVGGKGGREEGR 831
+ PP P S + GWS H AA +G S L SLL S P GPGGV PLML+ + GHV VK+L+ + + RARDE GRHALL+AWE R+ ++ L+ CF EE GG+ E E + LP P+LNDLHW++G+ L+H+AV+E W++VLK L+ M +G VD+N+RSGG GV GW G TPMQ+A + D+E GR+LW E VRE+HR D MVR WVWWR +GG+ R++ R
Sbjct: 1 SFPPPFPSS--GEYPGWSATHTAAEKGDVSSLRSLLQSLPPSLLPSLVTGPGPGGVRPLMLSVRTGHVGVVKILLQLG--KEACRARDEVGRHALLEAWERRDVEMIRVLISCFQEERGGKSWGKDEEDEGREEREGDRRGEKTLPAPSLNDLHWRSGQGLIHDAVREGWREVLKELIAM--GRKGSKNIVDINLRSGGMGVTGW--GWTPMQMAAMKDDKEGGRLLWREEAVREKHRCDLMVRSWVWWRKIGGEEERKKTR 254
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO10G03980.1 ID=NO10G03980.1|Name=NO10G03980.1|organism=Nannochloropsis oceanica|type=mRNA|length=2704bp ACAGACATGCTGCTCCCACAACCGCAACCCCCACCAACACACCCGAACAA CACAAAAGCCCCGTCACGGCGTCTTATCCTCAAGACGTTGGCTTTCCTCG TTCTCGCTGCTGGCACAAGCGTCGGTGGGCTCTTGCTCCTGATTGACAGC ATCAACCGCGGCTTCATCTCCCACCCTGTCCCAGATGTCTTGAAACCATC CGCATTAAGCGAAGTCGGGATCTTTTCCCGCCAGCTCTACCACACGTGCA CTACGCATCTCCGCCTCCTCCTTGACACCTTCATCACATCGCCCATCCAT AAAACGCTCTCCTCGCTCGGCGACCTGCTCCTAGAAATCCAGCTATGGTT ATTGCGGGTCGATGGCGAGCATGCTGAGGGTGTGTGGGCCTTGACTGCCT CTATGCTTCACTACGTGGAACGAGGCCCAGGGGAAGGAGGAGGAAAGGAG GGAGGAGGGGGGGGGCGGCACTTGGACATGGCGGCGGAGCTCTTGACCAC AACCCAGGTACATTACATGCGCCATGCTCCAGACTGGCTGCACGAGTTGC TTCACTTGGGTTTGAAAGTGGTGTGTGCTTTTGTGGCCGTGGCGGCGTTG CGGTGGGGGCATCGAGAACATGAGGAGGACGAGGAGGCGGAAGGGGCTGA AGAAGAGGCAGAGCAGAGCAATGATGCAGCAGCTATTGACGCTATATCTT CCCCTCTTCCTTCTTCGCCTCTTTGCCCCATTTTTCCCACTTCCACCTCT GCTACCACCTGTCTTTCCACTGAAGCTCCCCTCCCTCCTCCTTCCCACCC CTCCCACTCCTCCCTCCGTCCTCCTCATCATCACCTCCATAATACTCGCC GCCTATGCGAAAAATTTACGACGGCCTTCTTGCTCACCTTCGGCTTTGCT CTAGGCGTGGGCATCCTTGCCATGGACATTGCACAGCGTGACACGGAGCA AGATTTTCTCTCCTCCCCGCTCACGGTAGATGTACTCGAAGGGAAGGAGG TAGGCAGGGAGGGAGAATCCTCTTCAGCTTCATCCTTCTTGTCTTTTTTC AAGGTGCAGGAAGGAAGAAATATAGAGTCGTTGTCCTTCTCATCATTCTA CAGGGTGGAGGAAGGGAGGGAAGGGGGGAGAGAAGAAGGCTACTCCTTGA CTTCTTATCGTAAGGTCGCTACGAGAGGGGAGGGCGAGAGGGAGGGAGGG CTGCCAGAGTCTCAGCTGCCGCCTGCGGAGAAGGGGTGGGTCTCGTCCTT AAGTGCGTGGAGGAGAACCACGCCCCGGGCAGTCGCGATGACGGTGAATG AGTCAGATAAGGAGGGAGAGAGAGACGAAGGGAAGGATGGAGGAAAGGAA GAGGAGATGCGTTTTGAGGAAGAAGAGGAGGAGGTGACTGATGATGAGGG AGGGGAGCAAATTTTCAATGACAAGGATGATCTGTGGCCAAGAGGGTGCA AAGAGGACGAGGGATGGCGGGAAACGTGGGAAGAAGGGCAGTGGGTGGAG GATGAGGAGGAGGATAAAGAGGACAAGGAGGAGGAGGACGACGACGAGGA GGAGGACGAAGAAGAAGAAGAAGAAGAAGAAGAGGAGGAGGACAAGGAGA AAGAAGAAGAACAGGAGGACAAGGAGAAAGAAGAAGAAGAGGAGTTGCCG CTTCAAAGCGAGGTGGACGAGGAGGATCAGGGACGGAAGGGGGGGGCTCT TCACTACCACCGACAAGACCTACTACGACCTCAAGAAGGGGACGGACAAC GTCCCCCCCTCGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCCCTGAC GCCCAAGGCTGGTCTGTCATCCACCACGCTGCTTGGCAAGGCAAGACCTC CCTCCTCTTTTCCCTCCTCTCCTCCACCTCCCCCTTCGCCTTCCTCCAAC GTGGACCCGGGGGCGTCACGCCTCTGATGCTGGCCGCAAAAGGAGGACAT GTAGAGGCAGTCAAACTCCTTGTGGGTATCGAAGAGGTGCGAAGAGTGGG AAGGGCGAGGGATGAGAAGGGAAGGCATGCCTTGCTAGACGCGTGGGAGG GGAGAAATGAGGGGGTGGTATTGCCGTTGTTACAGTGTTTTGGGGAGGAG GTGGGAGGGAGGGAGGGAGAGGCAGAGGCTCCTAGTGCTGCATTTCTTCC GTTACCGACTTTGAATGACTTGCATTGGCAAACGGGACGGTCTTTATTGC ATGAGGCAGTAAAGGAGGAATGGAAAAAGGTCTTAAAGGCGCTGCTGATC ATGGCATCAGCAACGGAAGGGAAAGGCGGAACAGTAGATGTAAATGTGAG GAGTGGAGGCTGGGGAGTAGGGTGGGGAAGAGGGAGGACCCCTATGCAAT TGGCAGTATGGAGGCAGGACGAAGAGATTGGGCGGATGCTGTGGGCAAGG GAGGAAGTGAGAGAGGAGCATCGGTGGGACTGGATGGTGAGGGGGTGGGT TTGGTGGAGGGGGGTTGGGGGGAAGGGAGGGAGGGAGGAAGGGAGGGAGA GGGATTGAAAATGGGTCGTACGAGTTGAAGAAAGGTAGGTAGGTGTATGT ATGTGTGGTTGTAGACGCGAAGTGTAAATGATTTCCTGAGAGCTTGAAGG CACCCGAGGTGAAGGAAGGGTGTGGCTGTGGAGGAGTCAGGGAGGAAGGA AAGCGAGAAAGCGAGAAAGCGAGAAAGAAGGAAGGCTGCTGGTTGTATTT AGTC back to topprotein sequence of NO10G03980.1 >NO10G03980.1-protein ID=NO10G03980.1-protein|Name=NO10G03980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=834bp MLLPQPQPPPTHPNNTKAPSRRLILKTLAFLVLAAGTSVGGLLLLIDSIN RGFISHPVPDVLKPSALSEVGIFSRQLYHTCTTHLRLLLDTFITSPIHKT LSSLGDLLLEIQLWLLRVDGEHAEGVWALTASMLHYVERGPGEGGGKEGG GGGRHLDMAAELLTTTQVHYMRHAPDWLHELLHLGLKVVCAFVAVAALRW GHREHEEDEEAEGAEEEAEQSNDAAAIDAISSPLPSSPLCPIFPTSTSAT TCLSTEAPLPPPSHPSHSSLRPPHHHLHNTRRLCEKFTTAFLLTFGFALG VGILAMDIAQRDTEQDFLSSPLTVDVLEGKEVGREGESSSASSFLSFFKV QEGRNIESLSFSSFYRVEEGREGGREEGYSLTSYRKVATRGEGEREGGLP ESQLPPAEKGWVSSLSAWRRTTPRAVAMTVNESDKEGERDEGKDGGKEEE MRFEEEEEEVTDDEGGEQIFNDKDDLWPRGCKEDEGWRETWEEGQWVEDE EEDKEDKEEEDDDEEEDEEEEEEEEEEEDKEKEEEQEDKEKEEEEELPLQ SEVDEEDQGRKGGALHYHRQDLLRPQEGDGQRPPLALPPSLPPSLLPDAQ GWSVIHHAAWQGKTSLLFSLLSSTSPFAFLQRGPGGVTPLMLAAKGGHVE AVKLLVGIEEVRRVGRARDEKGRHALLDAWEGRNEGVVLPLLQCFGEEVG GREGEAEAPSAAFLPLPTLNDLHWQTGRSLLHEAVKEEWKKVLKALLIMA SATEGKGGTVDVNVRSGGWGVGWGRGRTPMQLAVWRQDEEIGRMLWAREE VREEHRWDWMVRGWVWWRGVGGKGGREEGRERD* back to topmRNA from alignment at chr10:1183264..1185967+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO10G03980.1 ID=NO10G03980.1|Name=NO10G03980.1|organism=Nannochloropsis oceanica|type=mRNA|length=2704bp|location=Sequence derived from alignment at chr10:1183264..1185967+ (Nannochloropsis oceanica) ACAGACATGCTGCTCCCACAACCGCAACCCCCACCAACACACCCGAACAA
CACAAAAGCCCCGTCACGGCGTCTTATCCTCAAGACGTTGGCTTTCCTCG
TTCTCGCTGCTGGCACAAGCGTCGGTGGGCTCTTGCTCCTGATTGACAGC
ATCAACCGCGGCTTCATCTCCCACCCTGTCCCAGATGTCTTGAAACCATC
CGCATTAAGCGAAGTCGGGATCTTTTCCCGCCAGCTCTACCACACGTGCA
CTACGCATCTCCGCCTCCTCCTTGACACCTTCATCACATCGCCCATCCAT
AAAACGCTCTCCTCGCTCGGCGACCTGCTCCTAGAAATCCAGCTATGGTT
ATTGCGGGTCGATGGCGAGCATGCTGAGGGTGTGTGGGCCTTGACTGCCT
CTATGCTTCACTACGTGGAACGAGGCCCAGGGGAAGGAGGAGGAAAGGAG
GGAGGAGGGGGGGGGCGGCACTTGGACATGGCGGCGGAGCTCTTGACCAC
AACCCAGGTACATTACATGCGCCATGCTCCAGACTGGCTGCACGAGTTGC
TTCACTTGGGTTTGAAAGTGGTGTGTGCTTTTGTGGCCGTGGCGGCGTTG
CGGTGGGGGCATCGAGAACATGAGGAGGACGAGGAGGCGGAAGGGGCTGA
AGAAGAGGCAGAGCAGAGCAATGATGCAGCAGCTATTGACGCTATATCTT
CCCCTCTTCCTTCTTCGCCTCTTTGCCCCATTTTTCCCACTTCCACCTCT
GCTACCACCTGTCTTTCCACTGAAGCTCCCCTCCCTCCTCCTTCCCACCC
CTCCCACTCCTCCCTCCGTCCTCCTCATCATCACCTCCATAATACTCGCC
GCCTATGCGAAAAATTTACGACGGCCTTCTTGCTCACCTTCGGCTTTGCT
CTAGGCGTGGGCATCCTTGCCATGGACATTGCACAGCGTGACACGGAGCA
AGATTTTCTCTCCTCCCCGCTCACGGTAGATGTACTCGAAGGGAAGGAGG
TAGGCAGGGAGGGAGAATCCTCTTCAGCTTCATCCTTCTTGTCTTTTTTC
AAGGTGCAGGAAGGAAGAAATATAGAGTCGTTGTCCTTCTCATCATTCTA
CAGGGTGGAGGAAGGGAGGGAAGGGGGGAGAGAAGAAGGCTACTCCTTGA
CTTCTTATCGTAAGGTCGCTACGAGAGGGGAGGGCGAGAGGGAGGGAGGG
CTGCCAGAGTCTCAGCTGCCGCCTGCGGAGAAGGGGTGGGTCTCGTCCTT
AAGTGCGTGGAGGAGAACCACGCCCCGGGCAGTCGCGATGACGGTGAATG
AGTCAGATAAGGAGGGAGAGAGAGACGAAGGGAAGGATGGAGGAAAGGAA
GAGGAGATGCGTTTTGAGGAAGAAGAGGAGGAGGTGACTGATGATGAGGG
AGGGGAGCAAATTTTCAATGACAAGGATGATCTGTGGCCAAGAGGGTGCA
AAGAGGACGAGGGATGGCGGGAAACGTGGGAAGAAGGGCAGTGGGTGGAG
GATGAGGAGGAGGATAAAGAGGACAAGGAGGAGGAGGACGACGACGAGGA
GGAGGACGAAGAAGAAGAAGAAGAAGAAGAAGAGGAGGAGGACAAGGAGA
AAGAAGAAGAACAGGAGGACAAGGAGAAAGAAGAAGAAGAGGAGTTGCCG
CTTCAAAGCGAGGTGGACGAGGAGGATCAGGGACGGAAGGGGGGGGCTCT
TCACTACCACCGACAAGACCTACTACGACCTCAAGAAGGGGACGGACAAC
GTCCCCCCCTCGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCCCTGAC
GCCCAAGGCTGGTCTGTCATCCACCACGCTGCTTGGCAAGGCAAGACCTC
CCTCCTCTTTTCCCTCCTCTCCTCCACCTCCCCCTTCGCCTTCCTCCAAC
GTGGACCCGGGGGCGTCACGCCTCTGATGCTGGCCGCAAAAGGAGGACAT
GTAGAGGCAGTCAAACTCCTTGTGGGTATCGAAGAGGTGCGAAGAGTGGG
AAGGGCGAGGGATGAGAAGGGAAGGCATGCCTTGCTAGACGCGTGGGAGG
GGAGAAATGAGGGGGTGGTATTGCCGTTGTTACAGTGTTTTGGGGAGGAG
GTGGGAGGGAGGGAGGGAGAGGCAGAGGCTCCTAGTGCTGCATTTCTTCC
GTTACCGACTTTGAATGACTTGCATTGGCAAACGGGACGGTCTTTATTGC
ATGAGGCAGTAAAGGAGGAATGGAAAAAGGTCTTAAAGGCGCTGCTGATC
ATGGCATCAGCAACGGAAGGGAAAGGCGGAACAGTAGATGTAAATGTGAG
GAGTGGAGGCTGGGGAGTAGGGTGGGGAAGAGGGAGGACCCCTATGCAAT
TGGCAGTATGGAGGCAGGACGAAGAGATTGGGCGGATGCTGTGGGCAAGG
GAGGAAGTGAGAGAGGAGCATCGGTGGGACTGGATGGTGAGGGGGTGGGT
TTGGTGGAGGGGGGTTGGGGGGAAGGGAGGGAGGGAGGAAGGGAGGGAGA
GGGATTGAAAATGGGTCGTACGAGTTGAAGAAAGGTAGGTAGGTGTATGT
ATGTGTGGTTGTAGACGCGAAGTGTAAATGATTTCCTGAGAGCTTGAAGG
CACCCGAGGTGAAGGAAGGGTGTGGCTGTGGAGGAGTCAGGGAGGAAGGA
AAGCGAGAAAGCGAGAAAGCGAGAAAGAAGGAAGGCTGCTGGTTGTATTT
AGTC back to topCoding sequence (CDS) from alignment at chr10:1183264..1185967+ >NO10G03980.1 ID=NO10G03980.1|Name=NO10G03980.1|organism=Nannochloropsis oceanica|type=CDS|length=2502bp|location=Sequence derived from alignment at chr10:1183264..1185967+ (Nannochloropsis oceanica) ATGCTGCTCCCACAACCGCAACCCCCACCAACACACCCGAACAACACAAA AGCCCCGTCACGGCGTCTTATCCTCAAGACGTTGGCTTTCCTCGTTCTCG CTGCTGGCACAAGCGTCGGTGGGCTCTTGCTCCTGATTGACAGCATCAAC CGCGGCTTCATCTCCCACCCTGTCCCAGATGTCTTGAAACCATCCGCATT AAGCGAAGTCGGGATCTTTTCCCGCCAGCTCTACCACACGTGCACTACGC ATCTCCGCCTCCTCCTTGACACCTTCATCACATCGCCCATCCATAAAACG CTCTCCTCGCTCGGCGACCTGCTCCTAGAAATCCAGCTATGGTTATTGCG GGTCGATGGCGAGCATGCTGAGGGTGTGTGGGCCTTGACTGCCTCTATGC TTCACTACGTGGAACGAGGCCCAGGGGAAGGAGGAGGAAAGGAGGGAGGA GGGGGGGGGCGGCACTTGGACATGGCGGCGGAGCTCTTGACCACAACCCA GGTACATTACATGCGCCATGCTCCAGACTGGCTGCACGAGTTGCTTCACT TGGGTTTGAAAGTGGTGTGTGCTTTTGTGGCCGTGGCGGCGTTGCGGTGG GGGCATCGAGAACATGAGGAGGACGAGGAGGCGGAAGGGGCTGAAGAAGA GGCAGAGCAGAGCAATGATGCAGCAGCTATTGACGCTATATCTTCCCCTC TTCCTTCTTCGCCTCTTTGCCCCATTTTTCCCACTTCCACCTCTGCTACC ACCTGTCTTTCCACTGAAGCTCCCCTCCCTCCTCCTTCCCACCCCTCCCA CTCCTCCCTCCGTCCTCCTCATCATCACCTCCATAATACTCGCCGCCTAT GCGAAAAATTTACGACGGCCTTCTTGCTCACCTTCGGCTTTGCTCTAGGC GTGGGCATCCTTGCCATGGACATTGCACAGCGTGACACGGAGCAAGATTT TCTCTCCTCCCCGCTCACGGTAGATGTACTCGAAGGGAAGGAGGTAGGCA GGGAGGGAGAATCCTCTTCAGCTTCATCCTTCTTGTCTTTTTTCAAGGTG CAGGAAGGAAGAAATATAGAGTCGTTGTCCTTCTCATCATTCTACAGGGT GGAGGAAGGGAGGGAAGGGGGGAGAGAAGAAGGCTACTCCTTGACTTCTT ATCGTAAGGTCGCTACGAGAGGGGAGGGCGAGAGGGAGGGAGGGCTGCCA GAGTCTCAGCTGCCGCCTGCGGAGAAGGGGTGGGTCTCGTCCTTAAGTGC GTGGAGGAGAACCACGCCCCGGGCAGTCGCGATGACGGTGAATGAGTCAG ATAAGGAGGGAGAGAGAGACGAAGGGAAGGATGGAGGAAAGGAAGAGGAG ATGCGTTTTGAGGAAGAAGAGGAGGAGGTGACTGATGATGAGGGAGGGGA GCAAATTTTCAATGACAAGGATGATCTGTGGCCAAGAGGGTGCAAAGAGG ACGAGGGATGGCGGGAAACGTGGGAAGAAGGGCAGTGGGTGGAGGATGAG GAGGAGGATAAAGAGGACAAGGAGGAGGAGGACGACGACGAGGAGGAGGA CGAAGAAGAAGAAGAAGAAGAAGAAGAGGAGGAGGACAAGGAGAAAGAAG AAGAACAGGAGGACAAGGAGAAAGAAGAAGAAGAGGAGTTGCCGCTTCAA AGCGAGGTGGACGAGGAGGATCAGGGACGGAAGGGGGGGGCTCTTCACTA CCACCGACAAGACCTACTACGACCTCAAGAAGGGGACGGACAACGTCCCC CCCTCGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCCCTGACGCCCAA GGCTGGTCTGTCATCCACCACGCTGCTTGGCAAGGCAAGACCTCCCTCCT CTTTTCCCTCCTCTCCTCCACCTCCCCCTTCGCCTTCCTCCAACGTGGAC CCGGGGGCGTCACGCCTCTGATGCTGGCCGCAAAAGGAGGACATGTAGAG GCAGTCAAACTCCTTGTGGGTATCGAAGAGGTGCGAAGAGTGGGAAGGGC GAGGGATGAGAAGGGAAGGCATGCCTTGCTAGACGCGTGGGAGGGGAGAA ATGAGGGGGTGGTATTGCCGTTGTTACAGTGTTTTGGGGAGGAGGTGGGA GGGAGGGAGGGAGAGGCAGAGGCTCCTAGTGCTGCATTTCTTCCGTTACC GACTTTGAATGACTTGCATTGGCAAACGGGACGGTCTTTATTGCATGAGG CAGTAAAGGAGGAATGGAAAAAGGTCTTAAAGGCGCTGCTGATCATGGCA TCAGCAACGGAAGGGAAAGGCGGAACAGTAGATGTAAATGTGAGGAGTGG AGGCTGGGGAGTAGGGTGGGGAAGAGGGAGGACCCCTATGCAATTGGCAG TATGGAGGCAGGACGAAGAGATTGGGCGGATGCTGTGGGCAAGGGAGGAA GTGAGAGAGGAGCATCGGTGGGACTGGATGGTGAGGGGGTGGGTTTGGTG GAGGGGGGTTGGGGGGAAGGGAGGGAGGGAGGAAGGGAGGGAGAGGGATT GA back to top
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