NO10G03830, NO10G03830 (gene) Nannochloropsis oceanica

Overview
NameNO10G03830
Unique NameNO10G03830
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3367
Alignment locationchr10:1114434..1117800 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:1114434..1117800 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO10G03830 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR016ngnoR016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001238NSK001238Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G03830.1NO10G03830.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G03830.1NO10G03830.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G03830 ID=NO10G03830|Name=NO10G03830|organism=Nannochloropsis oceanica|type=gene|length=3367bp
AACGGACTGGACTTATTTTCCTCTGTGGTCATGCGTTGGACAAATCATCT
GCAATACCTTGGGTCCAAGCTAGAGGCCGTTGGGCAGCTGTGTGAGAGTC
GTGATTCCACATGCGAAAGAAACCCTAGAACCACACAAAACCCTTAAACT
ATGCTGTCCAAAAAATCTCTTTAAGCTTGATCCCTCTTAGATACCTAGTC
ATGCAGTGTGGTCTCAAGATGGAGGAGCTAGCCAGTAGGTTTTGGAAAAG
GGCGGTCCGTCGAAACCCGGATGTTGAGGCTGTTCACAAAATTTTCGTGT
TGAGAGAAGATGACCACGAACTCGGGGCCAAAACCGCAAGTTTTTGGAAG
ACCCGCATGCCAAAATGCACCACACGGATACGACATTGTACGCGAAGCCT
TACATAATCTTAGCCGCCACAGCCCGCCACAAAATGTTGGTCGGTCCTTC
CTCCAGCCCCAGCACAGTACCGGTTTGATGCTCTTCTTCTGCTGCTTCTT
CATCCACGCCACACGTCAGTGTTCAAGAAAAATGAGGCAAACTCAAGACC
TTGTCAATTGAACGTGCCCACTTCCCTTCTCAGCACACCTGTGCCTTGAC
ACAAAGGCAGGCAAGGCCAGGCACCTTTTTCTGCCTCATTAATCGGCCTT
TTGCACATGATAACAAGCCGCTCACAAATCGTCCATTCCCTCCTTTCCCA
CAGACCACCACTGCACCGTCTAACCACCACCCACCACCACCATCATCACC
CATCACCACCGCCGTTAGCACCATGGCGCGCCTCCTCCTCCCCTTCCTCC
TTCCCTTTGCCCTTCTTCCGGCCGCTGTCACAGCCTATCCCAAGCTCCTG
ACAGACAGCAAAAGATGTTCTACTCCCTTAGCGgtacgagttagatccct
tcatctcccctcccttccttcccagcctttctccacgtccgcagtccccc
cgcttccttccgctttgttatgtctccatgtcatctcccccttacctccc
cattgcttcttctttccctccctctaactttccctttcccttccgctcct
cttacagGTGGGCCAAAAAATTATGGGGGCGCACGCGGCGCTTACAAACG
AGATCGTTACGgtacgtgatggatgaagaaaacggcaccaagcgtgggag
ggaaggagagaaggaggtggagtgggggataaaaagagggttattggaaa
gaccgacttgttctcacaagcatacccatactcaccggccccccactccc
tccctcacccacttcgtctctccctcctttcctcccttcccccttccttc
tctctctcgtagGTCGAGCGCGCGGACGGCACGGCGCTCGCCAGTGGTGA
CACATACGTGGCCGGTGAGGTTCTTAAAATCGGAATGCCTGTCGACGgta
agtgaggagggagggaggaagtggctcgtcgctcagacgtagcaggtttt
tgaccggtgatcagttccctgcttgcttattgttaactcactctcttcct
tcctccttccctccctcgttccaaccccccctccctcccttttctagAGC
CGGGTGTGTTGGAGGCAGTTGGAGGAAACTTTGTCAAGGGAGCCTGTGAC
GGCCGACGCGTCTTACCAGACGCCAAAGGGTTTGCAGgtgagggagcgaa
ggagggagagaggaaggccaggagggagggcgaagggtggaggacatcct
tatcatcaccatcatcctctgttgagaccggaaaaaaccgatcatcgcca
tccaccctctgactgaccttcccccctccctccctccctccctccctccc
tcccccctccctgcctcccttcctccgtagAATTCACCGTCCCCAAGGAC
GGCCTGGATGTGATGGTGTGGGCGGGCTATGCGAAAAAACATGGCATGGT
CTCCGTCACGCAGGGCTTCTTGCTCAAGGgtacggggaggaagggaggga
gagggggagggagggagggagggaaggagggaaggagactcattacagac
caccaccagtacgtcattctactccgacacttttcctcatccaacccctt
cctcctccctccctccctccctccctccttccctccatctcttccagGCA
CTAAGGGAGCGCGGGCCGTGCCTCCTGGGGTTACTCCTCCTCCTCCTGCT
GCTGCTGCTGCTGCTCCTGCTGCTGCTGCTGCTGCTGCCGCCACTGATGA
TACCAAGGCCGGCGCTGCTGCTACTCCTCCTACGGCTCCTGCTGCTGCTG
CTGCTCCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTCCTGCTGCTGCT
CCTGCTGCTGCTGCCGCCACTGATGATACCAAGGCCGGCGCTGCTGCTAC
TCCTCCTACGGCTCCTGCTGCTGCTGCTGCTCCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCTCCTGCTGCTGCTCCTGCTGCTGCTCCTGCTGCTGCT
GCCGCCACTGATGATACCAAGGCCGGCGCTGCTGCTACTCCTCCTACGGC
TCCTGCTGCTGCTGCTGCTGCTCCTCCTGCTGTAGCTGCTGCTGCTCCTG
CTGCTGCTCCTGCTGCTCCTCCTGCTGCTGCTGCCGCCACTGATGATACC
AAGGCCGGCGCTGCTGCCACTCCTCCTACGGCTCCTGCTGATGCTGTTGC
TGCTCCTACTGCTCCTGCTCCTGCTGCTACTGCAGCTGGTACTGCACCGG
CGGCGGCAGCGAGTGCGGGAGCAGAGGATGGGAAGGAGAAGAAGGAGGAC
GAGGAAGAGAAGGTGGGGAAGGAGAAGGAGGGGGACGAGGACGAGGACGA
GGACGAGGACGAGGACGAGGACGAGGATGAGGAGGAGGACGAGGATGAGG
ATGAGGATGACGATGAGGATGAGGAGGAGGAGGAGGAGGAGAAGAAGAAA
AAGAAGCCTTCTTCTGCTGCTGCTGCCGCGATGAATGACACCAAGGCCGG
AGCTCCTGCTGCTGCTCCTGCCGCTGGTGCTGCTGCTGTTGCTGCTGCTC
CTGCTGCCCCTGCTACTCCTTCTACAACTGCTGCATCTCCGGCGGCGGCG
GTGGATGCGGGGAAAGAGGGCGGAAATGACAAGAAGAAGAAGATGGAAGA
GGAAGAGGAGGCGTTGGAGAAGAAGGAAGGGGAGGAGGAGGTCGAAGTAG
AGGAGGAGGAGGTAGTAGAGACCAGGGAGGAGGAAGAGGAGGAAGAAGCG
GAGGAGGAGGACGAAGATGAGGAGGAGGAGGAGGAGGTAGAAGATGAGGA
ACTGGAGGAGGTGAAGGAGAAGGAAGAGGAAAAGAATAAGAAGGAGGAGA
AGGGTAAGCACTTGTTGCGGGCGCGGGCGTAGGCAACCCAAAAAAGGAGG
GAAGGAAGAGGGAGGGA
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protein sequence of NO10G03830.1

>NO10G03830.1-protein ID=NO10G03830.1-protein|Name=NO10G03830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=558bp
MARLLLPFLLPFALLPAAVTAYPKLLTDSKRCSTPLAVGQKIMGAHAALT
NEIVTVERADGTALASGDTYVAGEVLKIGMPVDEPGVLEAVGGNFVKGAC
DGRRVLPDAKGFAEFTVPKDGLDVMVWAGYAKKHGMVSVTQGFLLKGTKG
ARAVPPGVTPPPPAAAAAAPAAAAAAAATDDTKAGAAATPPTAPAAAAAP
AAAAAAAAAAPAAAPAAAAATDDTKAGAAATPPTAPAAAAAPAAAAAAAA
AAPAAAPAAAPAAAAATDDTKAGAAATPPTAPAAAAAAPPAVAAAAPAAA
PAAPPAAAAATDDTKAGAAATPPTAPADAVAAPTAPAPAATAAGTAPAAA
ASAGAEDGKEKKEDEEEKVGKEKEGDEDEDEDEDEDEDEDEEEDEDEDED
DDEDEEEEEEEKKKKKPSSAAAAAMNDTKAGAPAAAPAAGAAAVAAAPAA
PATPSTTAASPAAAVDAGKEGGNDKKKKMEEEEEALEKKEGEEEVEVEEE
EVVETREEEEEEEAEEEDEDEEEEEEVEDEELEEVKEKEEEKNKKEEKGK
HLLRARA*
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Synonyms
Publications