NO10G03830.1, NO10G03830.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO10G03830.1
Unique Name	NO10G03830.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2481
Alignment location	chr10:1114434..1117800 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr10	genome	chr10:1114434..1117800 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO10G03830.1 vs.

BLAST of NO10G03830.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO10G03830	NO10G03830	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO10G03830.1	NO10G03830.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO10G03830.1.cds1	NO10G03830.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G03830.1.cds2	NO10G03830.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G03830.1.cds3	NO10G03830.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G03830.1.cds4	NO10G03830.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G03830.1.cds5	NO10G03830.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G03830.1.cds6	NO10G03830.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr10:1114434..1117800+
coding sequence from alignment at chr10:1114434..1117800+

mRNA sequence

>NO10G03830.1 ID=NO10G03830.1|Name=NO10G03830.1|organism=Nannochloropsis oceanica|type=mRNA|length=2481bp
AACGGACTGGACTTATTTTCCTCTGTGGTCATGCGTTGGACAAATCATCT
GCAATACCTTGGGTCCAAGCTAGAGGCCGTTGGGCAGCTGTGTGAGAGTC
GTGATTCCACATGCGAAAGAAACCCTAGAACCACACAAAACCCTTAAACT
ATGCTGTCCAAAAAATCTCTTTAAGCTTGATCCCTCTTAGATACCTAGTC
ATGCAGTGTGGTCTCAAGATGGAGGAGCTAGCCAGTAGGTTTTGGAAAAG
GGCGGTCCGTCGAAACCCGGATGTTGAGGCTGTTCACAAAATTTTCGTGT
TGAGAGAAGATGACCACGAACTCGGGGCCAAAACCGCAAGTTTTTGGAAG
ACCCGCATGCCAAAATGCACCACACGGATACGACATTGTACGCGAAGCCT
TACATAATCTTAGCCGCCACAGCCCGCCACAAAATGTTGGTCGGTCCTTC
CTCCAGCCCCAGCACAGTACCGGTTTGATGCTCTTCTTCTGCTGCTTCTT
CATCCACGCCACACGTCAGTGTTCAAGAAAAATGAGGCAAACTCAAGACC
TTGTCAATTGAACGTGCCCACTTCCCTTCTCAGCACACCTGTGCCTTGAC
ACAAAGGCAGGCAAGGCCAGGCACCTTTTTCTGCCTCATTAATCGGCCTT
TTGCACATGATAACAAGCCGCTCACAAATCGTCCATTCCCTCCTTTCCCA
CAGACCACCACTGCACCGTCTAACCACCACCCACCACCACCATCATCACC
CATCACCACCGCCGTTAGCACCATGGCGCGCCTCCTCCTCCCCTTCCTCC
TTCCCTTTGCCCTTCTTCCGGCCGCTGTCACAGCCTATCCCAAGCTCCTG
ACAGACAGCAAAAGATGTTCTACTCCCTTAGCGGTGGGCCAAAAAATTAT
GGGGGCGCACGCGGCGCTTACAAACGAGATCGTTACGGTCGAGCGCGCGG
ACGGCACGGCGCTCGCCAGTGGTGACACATACGTGGCCGGTGAGGTTCTT
AAAATCGGAATGCCTGTCGACGAGCCGGGTGTGTTGGAGGCAGTTGGAGG
AAACTTTGTCAAGGGAGCCTGTGACGGCCGACGCGTCTTACCAGACGCCA
AAGGGTTTGCAGAATTCACCGTCCCCAAGGACGGCCTGGATGTGATGGTG
TGGGCGGGCTATGCGAAAAAACATGGCATGGTCTCCGTCACGCAGGGCTT
CTTGCTCAAGGGCACTAAGGGAGCGCGGGCCGTGCCTCCTGGGGTTACTC
CTCCTCCTCCTGCTGCTGCTGCTGCTGCTCCTGCTGCTGCTGCTGCTGCT
GCCGCCACTGATGATACCAAGGCCGGCGCTGCTGCTACTCCTCCTACGGC
TCCTGCTGCTGCTGCTGCTCCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTCCTGCTGCTGCTCCTGCTGCTGCTGCCGCCACTGATGATACCAAGGCC
GGCGCTGCTGCTACTCCTCCTACGGCTCCTGCTGCTGCTGCTGCTCCTGC
TGCTGCTGCTGCTGCTGCTGCTGCTGCTCCTGCTGCTGCTCCTGCTGCTG
CTCCTGCTGCTGCTGCCGCCACTGATGATACCAAGGCCGGCGCTGCTGCT
ACTCCTCCTACGGCTCCTGCTGCTGCTGCTGCTGCTCCTCCTGCTGTAGC
TGCTGCTGCTCCTGCTGCTGCTCCTGCTGCTCCTCCTGCTGCTGCTGCCG
CCACTGATGATACCAAGGCCGGCGCTGCTGCCACTCCTCCTACGGCTCCT
GCTGATGCTGTTGCTGCTCCTACTGCTCCTGCTCCTGCTGCTACTGCAGC
TGGTACTGCACCGGCGGCGGCAGCGAGTGCGGGAGCAGAGGATGGGAAGG
AGAAGAAGGAGGACGAGGAAGAGAAGGTGGGGAAGGAGAAGGAGGGGGAC
GAGGACGAGGACGAGGACGAGGACGAGGACGAGGACGAGGATGAGGAGGA
GGACGAGGATGAGGATGAGGATGACGATGAGGATGAGGAGGAGGAGGAGG
AGGAGAAGAAGAAAAAGAAGCCTTCTTCTGCTGCTGCTGCCGCGATGAAT
GACACCAAGGCCGGAGCTCCTGCTGCTGCTCCTGCCGCTGGTGCTGCTGC
TGTTGCTGCTGCTCCTGCTGCCCCTGCTACTCCTTCTACAACTGCTGCAT
CTCCGGCGGCGGCGGTGGATGCGGGGAAAGAGGGCGGAAATGACAAGAAG
AAGAAGATGGAAGAGGAAGAGGAGGCGTTGGAGAAGAAGGAAGGGGAGGA
GGAGGTCGAAGTAGAGGAGGAGGAGGTAGTAGAGACCAGGGAGGAGGAAG
AGGAGGAAGAAGCGGAGGAGGAGGACGAAGATGAGGAGGAGGAGGAGGAG
GTAGAAGATGAGGAACTGGAGGAGGTGAAGGAGAAGGAAGAGGAAAAGAA
TAAGAAGGAGGAGAAGGGTAAGCACTTGTTGCGGGCGCGGGCGTAGGCAA
CCCAAAAAAGGAGGGAAGGAAGAGGGAGGGA

protein sequence of NO10G03830.1

>NO10G03830.1-protein ID=NO10G03830.1-protein|Name=NO10G03830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=558bp
MARLLLPFLLPFALLPAAVTAYPKLLTDSKRCSTPLAVGQKIMGAHAALT
NEIVTVERADGTALASGDTYVAGEVLKIGMPVDEPGVLEAVGGNFVKGAC
DGRRVLPDAKGFAEFTVPKDGLDVMVWAGYAKKHGMVSVTQGFLLKGTKG
ARAVPPGVTPPPPAAAAAAPAAAAAAAATDDTKAGAAATPPTAPAAAAAP
AAAAAAAAAAPAAAPAAAAATDDTKAGAAATPPTAPAAAAAPAAAAAAAA
AAPAAAPAAAPAAAAATDDTKAGAAATPPTAPAAAAAAPPAVAAAAPAAA
PAAPPAAAAATDDTKAGAAATPPTAPADAVAAPTAPAPAATAAGTAPAAA
ASAGAEDGKEKKEDEEEKVGKEKEGDEDEDEDEDEDEDEDEEEDEDEDED
DDEDEEEEEEEKKKKKPSSAAAAAMNDTKAGAPAAAPAAGAAAVAAAPAA
PATPSTTAASPAAAVDAGKEGGNDKKKKMEEEEEALEKKEGEEEVEVEEE
EVVETREEEEEEEAEEEDEDEEEEEEVEDEELEEVKEKEEEKNKKEEKGK
HLLRARA*

mRNA from alignment at chr10:1114434..1117800+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO10G03830.1 ID=NO10G03830.1|Name=NO10G03830.1|organism=Nannochloropsis oceanica|type=mRNA|length=3367bp|location=Sequence derived from alignment at chr10:1114434..1117800+ (Nannochloropsis oceanica)
AACGGACTGGACTTATTTTCCTCTGTGGTCATGCGTTGGACAAATCATCT
GCAATACCTTGGGTCCAAGCTAGAGGCCGTTGGGCAGCTGTGTGAGAGTC
GTGATTCCACATGCGAAAGAAACCCTAGAACCACACAAAACCCTTAAACT
ATGCTGTCCAAAAAATCTCTTTAAGCTTGATCCCTCTTAGATACCTAGTC
ATGCAGTGTGGTCTCAAGATGGAGGAGCTAGCCAGTAGGTTTTGGAAAAG
GGCGGTCCGTCGAAACCCGGATGTTGAGGCTGTTCACAAAATTTTCGTGT
TGAGAGAAGATGACCACGAACTCGGGGCCAAAACCGCAAGTTTTTGGAAG
ACCCGCATGCCAAAATGCACCACACGGATACGACATTGTACGCGAAGCCT
TACATAATCTTAGCCGCCACAGCCCGCCACAAAATGTTGGTCGGTCCTTC
CTCCAGCCCCAGCACAGTACCGGTTTGATGCTCTTCTTCTGCTGCTTCTT
CATCCACGCCACACGTCAGTGTTCAAGAAAAATGAGGCAAACTCAAGACC
TTGTCAATTGAACGTGCCCACTTCCCTTCTCAGCACACCTGTGCCTTGAC
ACAAAGGCAGGCAAGGCCAGGCACCTTTTTCTGCCTCATTAATCGGCCTT
TTGCACATGATAACAAGCCGCTCACAAATCGTCCATTCCCTCCTTTCCCA
CAGACCACCACTGCACCGTCTAACCACCACCCACCACCACCATCATCACC
CATCACCACCGCCGTTAGCACCATGGCGCGCCTCCTCCTCCCCTTCCTCC
TTCCCTTTGCCCTTCTTCCGGCCGCTGTCACAGCCTATCCCAAGCTCCTG
ACAGACAGCAAAAGATGTTCTACTCCCTTAGCGGTACGAGTTAGATCCCT
TCATCTCCCCTCCCTTCCTTCCCAGCCTTTCTCCACGTCCGCAGTCCCCC
CGCTTCCTTCCGCTTTGTTATGTCTCCATGTCATCTCCCCCTTACCTCCC
CATTGCTTCTTCTTTCCCTCCCTCTAACTTTCCCTTTCCCTTCCGCTCCT
CTTACAGGTGGGCCAAAAAATTATGGGGGCGCACGCGGCGCTTACAAACG
AGATCGTTACGGTACGTGATGGATGAAGAAAACGGCACCAAGCGTGGGAG
GGAAGGAGAGAAGGAGGTGGAGTGGGGGATAAAAAGAGGGTTATTGGAAA
GACCGACTTGTTCTCACAAGCATACCCATACTCACCGGCCCCCCACTCCC
TCCCTCACCCACTTCGTCTCTCCCTCCTTTCCTCCCTTCCCCCTTCCTTC
TCTCTCTCGTAGGTCGAGCGCGCGGACGGCACGGCGCTCGCCAGTGGTGA
CACATACGTGGCCGGTGAGGTTCTTAAAATCGGAATGCCTGTCGACGGTA
AGTGAGGAGGGAGGGAGGAAGTGGCTCGTCGCTCAGACGTAGCAGGTTTT
TGACCGGTGATCAGTTCCCTGCTTGCTTATTGTTAACTCACTCTCTTCCT
TCCTCCTTCCCTCCCTCGTTCCAACCCCCCCTCCCTCCCTTTTCTAGAGC
CGGGTGTGTTGGAGGCAGTTGGAGGAAACTTTGTCAAGGGAGCCTGTGAC
GGCCGACGCGTCTTACCAGACGCCAAAGGGTTTGCAGGTGAGGGAGCGAA
GGAGGGAGAGAGGAAGGCCAGGAGGGAGGGCGAAGGGTGGAGGACATCCT
TATCATCACCATCATCCTCTGTTGAGACCGGAAAAAACCGATCATCGCCA
TCCACCCTCTGACTGACCTTCCCCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCCCCTCCCTGCCTCCCTTCCTCCGTAGAATTCACCGTCCCCAAGGAC
GGCCTGGATGTGATGGTGTGGGCGGGCTATGCGAAAAAACATGGCATGGT
CTCCGTCACGCAGGGCTTCTTGCTCAAGGGTACGGGGAGGAAGGGAGGGA
GAGGGGGAGGGAGGGAGGGAGGGAAGGAGGGAAGGAGACTCATTACAGAC
CACCACCAGTACGTCATTCTACTCCGACACTTTTCCTCATCCAACCCCTT
CCTCCTCCCTCCCTCCCTCCCTCCCTCCTTCCCTCCATCTCTTCCAGGCA
CTAAGGGAGCGCGGGCCGTGCCTCCTGGGGTTACTCCTCCTCCTCCTGCT
GCTGCTGCTGCTGCTCCTGCTGCTGCTGCTGCTGCTGCCGCCACTGATGA
TACCAAGGCCGGCGCTGCTGCTACTCCTCCTACGGCTCCTGCTGCTGCTG
CTGCTCCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTCCTGCTGCTGCT
CCTGCTGCTGCTGCCGCCACTGATGATACCAAGGCCGGCGCTGCTGCTAC
TCCTCCTACGGCTCCTGCTGCTGCTGCTGCTCCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCTCCTGCTGCTGCTCCTGCTGCTGCTCCTGCTGCTGCT
GCCGCCACTGATGATACCAAGGCCGGCGCTGCTGCTACTCCTCCTACGGC
TCCTGCTGCTGCTGCTGCTGCTCCTCCTGCTGTAGCTGCTGCTGCTCCTG
CTGCTGCTCCTGCTGCTCCTCCTGCTGCTGCTGCCGCCACTGATGATACC
AAGGCCGGCGCTGCTGCCACTCCTCCTACGGCTCCTGCTGATGCTGTTGC
TGCTCCTACTGCTCCTGCTCCTGCTGCTACTGCAGCTGGTACTGCACCGG
CGGCGGCAGCGAGTGCGGGAGCAGAGGATGGGAAGGAGAAGAAGGAGGAC
GAGGAAGAGAAGGTGGGGAAGGAGAAGGAGGGGGACGAGGACGAGGACGA
GGACGAGGACGAGGACGAGGACGAGGATGAGGAGGAGGACGAGGATGAGG
ATGAGGATGACGATGAGGATGAGGAGGAGGAGGAGGAGGAGAAGAAGAAA
AAGAAGCCTTCTTCTGCTGCTGCTGCCGCGATGAATGACACCAAGGCCGG
AGCTCCTGCTGCTGCTCCTGCCGCTGGTGCTGCTGCTGTTGCTGCTGCTC
CTGCTGCCCCTGCTACTCCTTCTACAACTGCTGCATCTCCGGCGGCGGCG
GTGGATGCGGGGAAAGAGGGCGGAAATGACAAGAAGAAGAAGATGGAAGA
GGAAGAGGAGGCGTTGGAGAAGAAGGAAGGGGAGGAGGAGGTCGAAGTAG
AGGAGGAGGAGGTAGTAGAGACCAGGGAGGAGGAAGAGGAGGAAGAAGCG
GAGGAGGAGGACGAAGATGAGGAGGAGGAGGAGGAGGTAGAAGATGAGGA
ACTGGAGGAGGTGAAGGAGAAGGAAGAGGAAAAGAATAAGAAGGAGGAGA
AGGGTAAGCACTTGTTGCGGGCGCGGGCGTAGGCAACCCAAAAAAGGAGG
GAAGGAAGAGGGAGGGA

Coding sequence (CDS) from alignment at chr10:1114434..1117800+

>NO10G03830.1 ID=NO10G03830.1|Name=NO10G03830.1|organism=Nannochloropsis oceanica|type=CDS|length=1674bp|location=Sequence derived from alignment at chr10:1114434..1117800+ (Nannochloropsis oceanica)
ATGGCGCGCCTCCTCCTCCCCTTCCTCCTTCCCTTTGCCCTTCTTCCGGC
CGCTGTCACAGCCTATCCCAAGCTCCTGACAGACAGCAAAAGATGTTCTA
CTCCCTTAGCGGTGGGCCAAAAAATTATGGGGGCGCACGCGGCGCTTACA
AACGAGATCGTTACGGTCGAGCGCGCGGACGGCACGGCGCTCGCCAGTGG
TGACACATACGTGGCCGGTGAGGTTCTTAAAATCGGAATGCCTGTCGACG
AGCCGGGTGTGTTGGAGGCAGTTGGAGGAAACTTTGTCAAGGGAGCCTGT
GACGGCCGACGCGTCTTACCAGACGCCAAAGGGTTTGCAGAATTCACCGT
CCCCAAGGACGGCCTGGATGTGATGGTGTGGGCGGGCTATGCGAAAAAAC
ATGGCATGGTCTCCGTCACGCAGGGCTTCTTGCTCAAGGGCACTAAGGGA
GCGCGGGCCGTGCCTCCTGGGGTTACTCCTCCTCCTCCTGCTGCTGCTGC
TGCTGCTCCTGCTGCTGCTGCTGCTGCTGCCGCCACTGATGATACCAAGG
CCGGCGCTGCTGCTACTCCTCCTACGGCTCCTGCTGCTGCTGCTGCTCCT
GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTCCTGCTGCTGCTCCTGCTGC
TGCTGCCGCCACTGATGATACCAAGGCCGGCGCTGCTGCTACTCCTCCTA
CGGCTCCTGCTGCTGCTGCTGCTCCTGCTGCTGCTGCTGCTGCTGCTGCT
GCTGCTCCTGCTGCTGCTCCTGCTGCTGCTCCTGCTGCTGCTGCCGCCAC
TGATGATACCAAGGCCGGCGCTGCTGCTACTCCTCCTACGGCTCCTGCTG
CTGCTGCTGCTGCTCCTCCTGCTGTAGCTGCTGCTGCTCCTGCTGCTGCT
CCTGCTGCTCCTCCTGCTGCTGCTGCCGCCACTGATGATACCAAGGCCGG
CGCTGCTGCCACTCCTCCTACGGCTCCTGCTGATGCTGTTGCTGCTCCTA
CTGCTCCTGCTCCTGCTGCTACTGCAGCTGGTACTGCACCGGCGGCGGCA
GCGAGTGCGGGAGCAGAGGATGGGAAGGAGAAGAAGGAGGACGAGGAAGA
GAAGGTGGGGAAGGAGAAGGAGGGGGACGAGGACGAGGACGAGGACGAGG
ACGAGGACGAGGACGAGGATGAGGAGGAGGACGAGGATGAGGATGAGGAT
GACGATGAGGATGAGGAGGAGGAGGAGGAGGAGAAGAAGAAAAAGAAGCC
TTCTTCTGCTGCTGCTGCCGCGATGAATGACACCAAGGCCGGAGCTCCTG
CTGCTGCTCCTGCCGCTGGTGCTGCTGCTGTTGCTGCTGCTCCTGCTGCC
CCTGCTACTCCTTCTACAACTGCTGCATCTCCGGCGGCGGCGGTGGATGC
GGGGAAAGAGGGCGGAAATGACAAGAAGAAGAAGATGGAAGAGGAAGAGG
AGGCGTTGGAGAAGAAGGAAGGGGAGGAGGAGGTCGAAGTAGAGGAGGAG
GAGGTAGTAGAGACCAGGGAGGAGGAAGAGGAGGAAGAAGCGGAGGAGGA
GGACGAAGATGAGGAGGAGGAGGAGGAGGTAGAAGATGAGGAACTGGAGG
AGGTGAAGGAGAAGGAAGAGGAAAAGAATAAGAAGGAGGAGAAGGGTAAG
CACTTGTTGCGGGCGCGGGCGTAG

Synonyms

Publications