NO10G03790, NO10G03790 (gene) Nannochloropsis oceanica

Overview
NameNO10G03790
Unique NameNO10G03790
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1896
Alignment locationchr10:1097931..1099826 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:1097931..1099826 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO10G03790 vs. NCBI_GenBank
Match: EWM25574.1 (hypothetical protein Naga_100572g2 [Nannochloropsis gaditana])

HSP 1 Score: 144.4 bits (363), Expect = 1.200e-30
Identity = 65/88 (73.86%), Postives = 75/88 (85.23%), Query Frame = 0 
Query:   28 LVRLPGAETTWPAFQAAFSNLPPLQRPRDSRLRLLFRVYRDLSAKTSWEDVKVVWRDICDSGSKRHTTFYEGGAYFIEGIFTRRPREA 116
            L  L GAET+W  F  AF+NLPP QRP D RLRLL RVY+DLS+KTSWEDV++VWRDICDSGS +HT FYEGGA+F+EGIFTRRPRE+
Sbjct:    9 LAGLSGAETSWFTFLTAFANLPPSQRPSDVRLRLLHRVYKDLSSKTSWEDVRIVWRDICDSGSWKHTPFYEGGAFFVEGIFTRRPRES 96
The following BLAST results are available for this feature:
BLAST of NO10G03790 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25574.11.200e-3073.86hypothetical protein Naga_100572g2 [Nannochloropsi... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR016ngnoR016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001233NSK001233Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G03790.1NO10G03790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|629557gene_3831Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100572g2gene4935Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G03790.1NO10G03790.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G03790 ID=NO10G03790|Name=NO10G03790|organism=Nannochloropsis oceanica|type=gene|length=1896bp
ATGGGGACCATGACCACCATCACCACCACCACCACGGCTAGCACCACCCC
CAAATGCACTTTCACTGCCACTGCCGAAGCCCTGGTCCGCCTACCCGGGG
CCGAAACGACCTGGCCTGCCTTCCAAGCCGCGTTCAGTAACCTCCCCCCT
CTCCAGAGGCCACGCGACAGCCGCCTCCGCCTCCTTTTTCGTGTATATCG
AGACTTGAGCGCTAAGACCAGTTGGGAGGACGTCAAAGTCGTCTGGAGAG
ATATATGTGACAGTGGCTCGAAGCGTCACACCACTTTTTATGAGGGTGGG
GCATATTTTATTGAGGGAATTTTTACTCGTCGTCCACGCGAGGCACGGGA
AGCGGCAGCAGCGGCAGCGAAGAAGAAGATGGTGAAAAAGAAGAAGGCCA
AGTTTAAAAAGATGATCCAGAAGAAGAAGGAAGAGAAGAGAATGAAGAGG
GAGCAACGTGTGGAGGAGGAGAGGGCGAGGAGGATGGATGCGGGCGAGGA
GGAAGAGGAGGAAGGCGAGGCGGGTGGGGAGGAGGAAGAGGAGGAAGGGG
TGGAAGAAGGAGGGGAAAAAGGTAAAAGGGAATGCCAAGAGAATGGTAAG
GTGGGAGGCGAAGGAGAAGATAGGGGGGAGAAGAGAGCGGCTGAGGCTAT
GGAAGGAGACGAAGAGACCTTGCAGGCGACGGGAAAAGTGGCAAAAGCAG
AGGGCGGAAAGGAGGAGGGACAGCAGCAACAGGAAAATCAGCAGCACCAG
GAGATAGAATATAAAGGCGAGCAGCTGCAACAGCAGTACATCGAAGAGAA
ACAGCAAGCTGAGGGCGATCAAGAGGAGGAAATGAAGGCAGAGGAAGAGG
AGTTGATAGCTATTGTACAGGTGGGTGCGGAGAGCGAGGAGACTCCTGCA
GAAGCAGCAGCATCCGCAACAGCAACCACAGCAGCAGTAGTAAGAGCATC
AACAAGAGCAACAATTGTTACCGCCTTATCGTCAGCGGCCGAGGTTATTG
CGACGTTAGAAGAGGAAGCAGGCATGGTTGTACCAGCAGCATCAGAAGCA
GCAGCAGCAGCAGAGGAAGCAACAGCAGCAGCAGCATCGGTAACAACAAC
CGCACCATCACCAATAGCTGAGACCATTACTGCCCTGGAACAGGAAGCAG
GCATGGTCGTACCAGCAGCGACAGAACCAGCAGCAGAAGCAACAGAGGCA
GCAGAGGTGGCAACAGCAGCGACAGCAGCAACAGGAGTAGATGGGAGACC
TGTTATCTCTACCCCCTCTTCTCTTCCTCAAGGAATGAGGTCAATAGAAA
AAAATGAAGAAATGGAGCAGGCCGTTTATGACGACGTGAAAAAAGAGGAG
GTAACAGCAGCAACAGCAGCAGCACCAGCAGCAGCAGTAGTAGTAGCAGC
AGCAGCAGCGGCGGATCCTTGTCTTTCCTCCACTCCCACGCAACTCTCCA
CCTCTGTCACTGCTTCGTCCCTTCCTCCATCTTCTCCTTACCCTCATTCT
TTGTCTTCCATCACAAATACCACTATCGGCAGCACCAAGAAAATAAAACA
GCAACAGCAGCAGCAGCAGAAGCAGCAGCAGTGTCGTGGCTCCCCATCTC
CTTCTCCTTCCTTCCCTCCCAATTTCGCCCTACCCCCTGTACCAGCTGTT
GTCTACCCCATGGCCTTCAACGAGTCTCTAGATGCGGGCAAGCTGCTAGC
TTTCTCCGCCTATGCTGCCGGGCGCCGAGAGAAGGAGATAGGAAAGGAGG
GAGGGCTAAGGCTGTCGGTGCCCCCATTATTGATTGCCTTGTGTAATGAG
GTGGAGATAATCTATCAGGAGGTGCGGTTGGGGATCGCTGAGCCAACGGA
CAAGGAGGAAAAGCTCAAGAAAACGGTACAGAGTGTAAATAAATAA
back to top

protein sequence of NO10G03790.1

>NO10G03790.1-protein ID=NO10G03790.1-protein|Name=NO10G03790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=632bp
MGTMTTITTTTTASTTPKCTFTATAEALVRLPGAETTWPAFQAAFSNLPP
LQRPRDSRLRLLFRVYRDLSAKTSWEDVKVVWRDICDSGSKRHTTFYEGG
AYFIEGIFTRRPREAREAAAAAAKKKMVKKKKAKFKKMIQKKKEEKRMKR
EQRVEEERARRMDAGEEEEEEGEAGGEEEEEEGVEEGGEKGKRECQENGK
VGGEGEDRGEKRAAEAMEGDEETLQATGKVAKAEGGKEEGQQQQENQQHQ
EIEYKGEQLQQQYIEEKQQAEGDQEEEMKAEEEELIAIVQVGAESEETPA
EAAASATATTAAVVRASTRATIVTALSSAAEVIATLEEEAGMVVPAASEA
AAAAEEATAAAASVTTTAPSPIAETITALEQEAGMVVPAATEPAAEATEA
AEVATAATAATGVDGRPVISTPSSLPQGMRSIEKNEEMEQAVYDDVKKEE
VTAATAAAPAAAVVVAAAAAADPCLSSTPTQLSTSVTASSLPPSSPYPHS
LSSITNTTIGSTKKIKQQQQQQQKQQQCRGSPSPSPSFPPNFALPPVPAV
VYPMAFNESLDAGKLLAFSAYAAGRREKEIGKEGGLRLSVPPLLIALCNE
VEIIYQEVRLGIAEPTDKEEKLKKTVQSVNK*
back to top
Synonyms
Publications