NO10G03790.1, NO10G03790.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G03790.1
Unique NameNO10G03790.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1896
Alignment locationchr10:1097931..1099826 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:1097931..1099826 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO10G03790.1 vs.
Match: EWM25574.1 (hypothetical protein Naga_100572g2 [Nannochloropsis gaditana])

HSP 1 Score: 221.9 bits (564), Expect = 5.800e-54
Identity = 259/681 (38.03%), Postives = 354/681 (51.98%), Query Frame = 0
Query:   28 LVRLPGAETTWPAFQAAFSNLPPLQRPRDSRLRLLFRVYRDLSAKTSWEDVKVVWRDICDSGSKRHTTFYEGGAYFIEGIFTRRPREAREAAAAAAKKKMVKKKKAKFKKMIQKKKEEKRMKREQRVEEERARRMDAGEEEEEEGEAGGEEEEEEGVEEGGEKGKRECQENGKVGGEGEDRGEKRAAEAMEGDEETLQATGKVAKAEGGKEEGQQQQENQQHQEIEYKG-EQLQQQYIEEKQQAEGDQEEEMKAEEEELIAIVQVGAESEETPAEAAASATATTAAVVRASTRATIVTAL----SSAAEVIATLEEEAG------MVVPAASEAAAAAEEA--TAAAASVTTTAPSPIAETITALEQEAGMVVPAATEPAAEATEAAEVATAATAATGVDGRPV-ISTPSSLP------QGMRSIEKNEEMEQAVYDDVKKEEVTAATAA-----------------APAAAVVVAAAAAADPCLSSTPTQLST--SVTASSLPPSSP---------------------------YPHSLSSITNTTIGSTKKIKQQQQQQQKQQQCRGSPSPSPSFPPNFA-----------LPPVPAVVYPMAFNESLDAGKLLAFSAYAAGRREKEIGKEGGLRLSVPPLLIALCNEVEIIYQEVRLGIAEPTDKEEKLKKTVQSVNK 632
            L  L GAET+W  F  AF+NLPP QRP D RLRLL RVY+DLS+KTSWEDV++VWRDICDSGS +HT FYEGGA+F+EGIFTRRPRE+REAA A AKKK+VKKKKA FKKM++KKKEE+++KRE+R+ EE+ ++ +A   E+ E EAG  +E+ E      E G+ E ++  +  G  +   E      M+    T Q  GK AKAE  ++ G+++ E +   + E  G E+  Q+  +E+++ +G ++E +   EE  ++  + G++ +    E           V R       V  +     S  E    +E E G        VP +S      E+   T+ + ++     SP   T T  +       P A     E   AAE   A+ A     GRP  +   SS P      +G  ++      E AV    +    TAA  +                  PA A+   A  A  P LSS P +  T     A SLPPS P                               L++  ++   S+      +  Q  Q++ + + +  PSFPP  +           LPPVPA V+P+AFNESLDAGKL+A +AYAAG R +    +G   +SVPPLLIALCNEVEIIYQEVRLG+AEPTDKE KL+K+VQ+V K
Sbjct:    9 LAGLSGAETSWFTFLTAFANLPPSQRPSDVRLRLLHRVYKDLSSKTSWEDVRIVWRDICDSGSWKHTPFYEGGAFFVEGIFTRRPRESREAAVAEAKKKLVKKKKANFKKMLKKKKEERKLKREKRIAEEKMKQTEAQYVEKGEDEAGEVKEDMEKEGNAEELGEDEIRKILEECGNEDAADECGRIGGMKRPRPT-QEEGKEAKAEMVEQGGKKRVEVEDDDDDEGNGTEEDPQEKEDEEKEDKGTRQEGL--TEERGLSRPRNGSDGQ---GETGTGQEEVEEEVGREDGHDKDVRRVEGQRGSDGEGWTAMEMEEGEEDGKEEEVPGSSSRDHPVEQKPHTSLSLAMVGVTLSPTGSTDTTRD-------PLAAAGGGENLLAAEGDEASRAGVPRGGRPTEVGIDSSFPSTHVPAKGNGALTPTPVCETAVPATPQTASATAAGPSLAMTYQSSASRADAYCDRPAGAIPAPAQGARSP-LSSQPAEPPTFPPSLAPSLPPSLPSCPPPEGIGVDGTGLATEAQTGAEHTAIMSQLNASPSSRDPSSTTPASSRPSQSAQKRAKKAGTSLPSFPPALSPSSPAPSMTPLLPPVPAAVFPLAFNESLDAGKLVALAAYAAGLRGRSGEGDGRENISVPPLLIALCNEVEIIYQEVRLGLAEPTDKEAKLRKSVQAVRK 675          
The following BLAST results are available for this feature:
BLAST of NO10G03790.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25574.15.800e-5438.03hypothetical protein Naga_100572g2 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G03790NO10G03790Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G03790.1NO10G03790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G03790.1.cds1NO10G03790.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G03790.1 ID=NO10G03790.1|Name=NO10G03790.1|organism=Nannochloropsis oceanica|type=mRNA|length=1896bp
ATGGGGACCATGACCACCATCACCACCACCACCACGGCTAGCACCACCCC
CAAATGCACTTTCACTGCCACTGCCGAAGCCCTGGTCCGCCTACCCGGGG
CCGAAACGACCTGGCCTGCCTTCCAAGCCGCGTTCAGTAACCTCCCCCCT
CTCCAGAGGCCACGCGACAGCCGCCTCCGCCTCCTTTTTCGTGTATATCG
AGACTTGAGCGCTAAGACCAGTTGGGAGGACGTCAAAGTCGTCTGGAGAG
ATATATGTGACAGTGGCTCGAAGCGTCACACCACTTTTTATGAGGGTGGG
GCATATTTTATTGAGGGAATTTTTACTCGTCGTCCACGCGAGGCACGGGA
AGCGGCAGCAGCGGCAGCGAAGAAGAAGATGGTGAAAAAGAAGAAGGCCA
AGTTTAAAAAGATGATCCAGAAGAAGAAGGAAGAGAAGAGAATGAAGAGG
GAGCAACGTGTGGAGGAGGAGAGGGCGAGGAGGATGGATGCGGGCGAGGA
GGAAGAGGAGGAAGGCGAGGCGGGTGGGGAGGAGGAAGAGGAGGAAGGGG
TGGAAGAAGGAGGGGAAAAAGGTAAAAGGGAATGCCAAGAGAATGGTAAG
GTGGGAGGCGAAGGAGAAGATAGGGGGGAGAAGAGAGCGGCTGAGGCTAT
GGAAGGAGACGAAGAGACCTTGCAGGCGACGGGAAAAGTGGCAAAAGCAG
AGGGCGGAAAGGAGGAGGGACAGCAGCAACAGGAAAATCAGCAGCACCAG
GAGATAGAATATAAAGGCGAGCAGCTGCAACAGCAGTACATCGAAGAGAA
ACAGCAAGCTGAGGGCGATCAAGAGGAGGAAATGAAGGCAGAGGAAGAGG
AGTTGATAGCTATTGTACAGGTGGGTGCGGAGAGCGAGGAGACTCCTGCA
GAAGCAGCAGCATCCGCAACAGCAACCACAGCAGCAGTAGTAAGAGCATC
AACAAGAGCAACAATTGTTACCGCCTTATCGTCAGCGGCCGAGGTTATTG
CGACGTTAGAAGAGGAAGCAGGCATGGTTGTACCAGCAGCATCAGAAGCA
GCAGCAGCAGCAGAGGAAGCAACAGCAGCAGCAGCATCGGTAACAACAAC
CGCACCATCACCAATAGCTGAGACCATTACTGCCCTGGAACAGGAAGCAG
GCATGGTCGTACCAGCAGCGACAGAACCAGCAGCAGAAGCAACAGAGGCA
GCAGAGGTGGCAACAGCAGCGACAGCAGCAACAGGAGTAGATGGGAGACC
TGTTATCTCTACCCCCTCTTCTCTTCCTCAAGGAATGAGGTCAATAGAAA
AAAATGAAGAAATGGAGCAGGCCGTTTATGACGACGTGAAAAAAGAGGAG
GTAACAGCAGCAACAGCAGCAGCACCAGCAGCAGCAGTAGTAGTAGCAGC
AGCAGCAGCGGCGGATCCTTGTCTTTCCTCCACTCCCACGCAACTCTCCA
CCTCTGTCACTGCTTCGTCCCTTCCTCCATCTTCTCCTTACCCTCATTCT
TTGTCTTCCATCACAAATACCACTATCGGCAGCACCAAGAAAATAAAACA
GCAACAGCAGCAGCAGCAGAAGCAGCAGCAGTGTCGTGGCTCCCCATCTC
CTTCTCCTTCCTTCCCTCCCAATTTCGCCCTACCCCCTGTACCAGCTGTT
GTCTACCCCATGGCCTTCAACGAGTCTCTAGATGCGGGCAAGCTGCTAGC
TTTCTCCGCCTATGCTGCCGGGCGCCGAGAGAAGGAGATAGGAAAGGAGG
GAGGGCTAAGGCTGTCGGTGCCCCCATTATTGATTGCCTTGTGTAATGAG
GTGGAGATAATCTATCAGGAGGTGCGGTTGGGGATCGCTGAGCCAACGGA
CAAGGAGGAAAAGCTCAAGAAAACGGTACAGAGTGTAAATAAATAA
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protein sequence of NO10G03790.1

>NO10G03790.1-protein ID=NO10G03790.1-protein|Name=NO10G03790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=632bp
MGTMTTITTTTTASTTPKCTFTATAEALVRLPGAETTWPAFQAAFSNLPP
LQRPRDSRLRLLFRVYRDLSAKTSWEDVKVVWRDICDSGSKRHTTFYEGG
AYFIEGIFTRRPREAREAAAAAAKKKMVKKKKAKFKKMIQKKKEEKRMKR
EQRVEEERARRMDAGEEEEEEGEAGGEEEEEEGVEEGGEKGKRECQENGK
VGGEGEDRGEKRAAEAMEGDEETLQATGKVAKAEGGKEEGQQQQENQQHQ
EIEYKGEQLQQQYIEEKQQAEGDQEEEMKAEEEELIAIVQVGAESEETPA
EAAASATATTAAVVRASTRATIVTALSSAAEVIATLEEEAGMVVPAASEA
AAAAEEATAAAASVTTTAPSPIAETITALEQEAGMVVPAATEPAAEATEA
AEVATAATAATGVDGRPVISTPSSLPQGMRSIEKNEEMEQAVYDDVKKEE
VTAATAAAPAAAVVVAAAAAADPCLSSTPTQLSTSVTASSLPPSSPYPHS
LSSITNTTIGSTKKIKQQQQQQQKQQQCRGSPSPSPSFPPNFALPPVPAV
VYPMAFNESLDAGKLLAFSAYAAGRREKEIGKEGGLRLSVPPLLIALCNE
VEIIYQEVRLGIAEPTDKEEKLKKTVQSVNK*
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mRNA from alignment at chr10:1097931..1099826+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G03790.1 ID=NO10G03790.1|Name=NO10G03790.1|organism=Nannochloropsis oceanica|type=mRNA|length=1896bp|location=Sequence derived from alignment at chr10:1097931..1099826+ (Nannochloropsis oceanica)
ATGGGGACCATGACCACCATCACCACCACCACCACGGCTAGCACCACCCC CAAATGCACTTTCACTGCCACTGCCGAAGCCCTGGTCCGCCTACCCGGGG CCGAAACGACCTGGCCTGCCTTCCAAGCCGCGTTCAGTAACCTCCCCCCT CTCCAGAGGCCACGCGACAGCCGCCTCCGCCTCCTTTTTCGTGTATATCG AGACTTGAGCGCTAAGACCAGTTGGGAGGACGTCAAAGTCGTCTGGAGAG ATATATGTGACAGTGGCTCGAAGCGTCACACCACTTTTTATGAGGGTGGG GCATATTTTATTGAGGGAATTTTTACTCGTCGTCCACGCGAGGCACGGGA AGCGGCAGCAGCGGCAGCGAAGAAGAAGATGGTGAAAAAGAAGAAGGCCA AGTTTAAAAAGATGATCCAGAAGAAGAAGGAAGAGAAGAGAATGAAGAGG GAGCAACGTGTGGAGGAGGAGAGGGCGAGGAGGATGGATGCGGGCGAGGA GGAAGAGGAGGAAGGCGAGGCGGGTGGGGAGGAGGAAGAGGAGGAAGGGG TGGAAGAAGGAGGGGAAAAAGGTAAAAGGGAATGCCAAGAGAATGGTAAG GTGGGAGGCGAAGGAGAAGATAGGGGGGAGAAGAGAGCGGCTGAGGCTAT GGAAGGAGACGAAGAGACCTTGCAGGCGACGGGAAAAGTGGCAAAAGCAG AGGGCGGAAAGGAGGAGGGACAGCAGCAACAGGAAAATCAGCAGCACCAG GAGATAGAATATAAAGGCGAGCAGCTGCAACAGCAGTACATCGAAGAGAA ACAGCAAGCTGAGGGCGATCAAGAGGAGGAAATGAAGGCAGAGGAAGAGG AGTTGATAGCTATTGTACAGGTGGGTGCGGAGAGCGAGGAGACTCCTGCA GAAGCAGCAGCATCCGCAACAGCAACCACAGCAGCAGTAGTAAGAGCATC AACAAGAGCAACAATTGTTACCGCCTTATCGTCAGCGGCCGAGGTTATTG CGACGTTAGAAGAGGAAGCAGGCATGGTTGTACCAGCAGCATCAGAAGCA GCAGCAGCAGCAGAGGAAGCAACAGCAGCAGCAGCATCGGTAACAACAAC CGCACCATCACCAATAGCTGAGACCATTACTGCCCTGGAACAGGAAGCAG GCATGGTCGTACCAGCAGCGACAGAACCAGCAGCAGAAGCAACAGAGGCA GCAGAGGTGGCAACAGCAGCGACAGCAGCAACAGGAGTAGATGGGAGACC TGTTATCTCTACCCCCTCTTCTCTTCCTCAAGGAATGAGGTCAATAGAAA AAAATGAAGAAATGGAGCAGGCCGTTTATGACGACGTGAAAAAAGAGGAG GTAACAGCAGCAACAGCAGCAGCACCAGCAGCAGCAGTAGTAGTAGCAGC AGCAGCAGCGGCGGATCCTTGTCTTTCCTCCACTCCCACGCAACTCTCCA CCTCTGTCACTGCTTCGTCCCTTCCTCCATCTTCTCCTTACCCTCATTCT TTGTCTTCCATCACAAATACCACTATCGGCAGCACCAAGAAAATAAAACA GCAACAGCAGCAGCAGCAGAAGCAGCAGCAGTGTCGTGGCTCCCCATCTC CTTCTCCTTCCTTCCCTCCCAATTTCGCCCTACCCCCTGTACCAGCTGTT GTCTACCCCATGGCCTTCAACGAGTCTCTAGATGCGGGCAAGCTGCTAGC TTTCTCCGCCTATGCTGCCGGGCGCCGAGAGAAGGAGATAGGAAAGGAGG GAGGGCTAAGGCTGTCGGTGCCCCCATTATTGATTGCCTTGTGTAATGAG GTGGAGATAATCTATCAGGAGGTGCGGTTGGGGATCGCTGAGCCAACGGA CAAGGAGGAAAAGCTCAAGAAAACGGTACAGAGTGTAAATAAATAA
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Coding sequence (CDS) from alignment at chr10:1097931..1099826+

>NO10G03790.1 ID=NO10G03790.1|Name=NO10G03790.1|organism=Nannochloropsis oceanica|type=CDS|length=1896bp|location=Sequence derived from alignment at chr10:1097931..1099826+ (Nannochloropsis oceanica)
ATGGGGACCATGACCACCATCACCACCACCACCACGGCTAGCACCACCCC
CAAATGCACTTTCACTGCCACTGCCGAAGCCCTGGTCCGCCTACCCGGGG
CCGAAACGACCTGGCCTGCCTTCCAAGCCGCGTTCAGTAACCTCCCCCCT
CTCCAGAGGCCACGCGACAGCCGCCTCCGCCTCCTTTTTCGTGTATATCG
AGACTTGAGCGCTAAGACCAGTTGGGAGGACGTCAAAGTCGTCTGGAGAG
ATATATGTGACAGTGGCTCGAAGCGTCACACCACTTTTTATGAGGGTGGG
GCATATTTTATTGAGGGAATTTTTACTCGTCGTCCACGCGAGGCACGGGA
AGCGGCAGCAGCGGCAGCGAAGAAGAAGATGGTGAAAAAGAAGAAGGCCA
AGTTTAAAAAGATGATCCAGAAGAAGAAGGAAGAGAAGAGAATGAAGAGG
GAGCAACGTGTGGAGGAGGAGAGGGCGAGGAGGATGGATGCGGGCGAGGA
GGAAGAGGAGGAAGGCGAGGCGGGTGGGGAGGAGGAAGAGGAGGAAGGGG
TGGAAGAAGGAGGGGAAAAAGGTAAAAGGGAATGCCAAGAGAATGGTAAG
GTGGGAGGCGAAGGAGAAGATAGGGGGGAGAAGAGAGCGGCTGAGGCTAT
GGAAGGAGACGAAGAGACCTTGCAGGCGACGGGAAAAGTGGCAAAAGCAG
AGGGCGGAAAGGAGGAGGGACAGCAGCAACAGGAAAATCAGCAGCACCAG
GAGATAGAATATAAAGGCGAGCAGCTGCAACAGCAGTACATCGAAGAGAA
ACAGCAAGCTGAGGGCGATCAAGAGGAGGAAATGAAGGCAGAGGAAGAGG
AGTTGATAGCTATTGTACAGGTGGGTGCGGAGAGCGAGGAGACTCCTGCA
GAAGCAGCAGCATCCGCAACAGCAACCACAGCAGCAGTAGTAAGAGCATC
AACAAGAGCAACAATTGTTACCGCCTTATCGTCAGCGGCCGAGGTTATTG
CGACGTTAGAAGAGGAAGCAGGCATGGTTGTACCAGCAGCATCAGAAGCA
GCAGCAGCAGCAGAGGAAGCAACAGCAGCAGCAGCATCGGTAACAACAAC
CGCACCATCACCAATAGCTGAGACCATTACTGCCCTGGAACAGGAAGCAG
GCATGGTCGTACCAGCAGCGACAGAACCAGCAGCAGAAGCAACAGAGGCA
GCAGAGGTGGCAACAGCAGCGACAGCAGCAACAGGAGTAGATGGGAGACC
TGTTATCTCTACCCCCTCTTCTCTTCCTCAAGGAATGAGGTCAATAGAAA
AAAATGAAGAAATGGAGCAGGCCGTTTATGACGACGTGAAAAAAGAGGAG
GTAACAGCAGCAACAGCAGCAGCACCAGCAGCAGCAGTAGTAGTAGCAGC
AGCAGCAGCGGCGGATCCTTGTCTTTCCTCCACTCCCACGCAACTCTCCA
CCTCTGTCACTGCTTCGTCCCTTCCTCCATCTTCTCCTTACCCTCATTCT
TTGTCTTCCATCACAAATACCACTATCGGCAGCACCAAGAAAATAAAACA
GCAACAGCAGCAGCAGCAGAAGCAGCAGCAGTGTCGTGGCTCCCCATCTC
CTTCTCCTTCCTTCCCTCCCAATTTCGCCCTACCCCCTGTACCAGCTGTT
GTCTACCCCATGGCCTTCAACGAGTCTCTAGATGCGGGCAAGCTGCTAGC
TTTCTCCGCCTATGCTGCCGGGCGCCGAGAGAAGGAGATAGGAAAGGAGG
GAGGGCTAAGGCTGTCGGTGCCCCCATTATTGATTGCCTTGTGTAATGAG
GTGGAGATAATCTATCAGGAGGTGCGGTTGGGGATCGCTGAGCCAACGGA
CAAGGAGGAAAAGCTCAAGAAAACGGTACAGAGTGTAAATAAATAA
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Synonyms
Publications