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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr10 | genome | chr10:1097931..1099826 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO10G03790.1 vs.
Match: EWM25574.1 (hypothetical protein Naga_100572g2 [Nannochloropsis gaditana]) HSP 1 Score: 221.9 bits (564), Expect = 5.800e-54 Identity = 259/681 (38.03%), Postives = 354/681 (51.98%), Query Frame = 0
Query: 28 LVRLPGAETTWPAFQAAFSNLPPLQRPRDSRLRLLFRVYRDLSAKTSWEDVKVVWRDICDSGSKRHTTFYEGGAYFIEGIFTRRPREAREAAAAAAKKKMVKKKKAKFKKMIQKKKEEKRMKREQRVEEERARRMDAGEEEEEEGEAGGEEEEEEGVEEGGEKGKRECQENGKVGGEGEDRGEKRAAEAMEGDEETLQATGKVAKAEGGKEEGQQQQENQQHQEIEYKG-EQLQQQYIEEKQQAEGDQEEEMKAEEEELIAIVQVGAESEETPAEAAASATATTAAVVRASTRATIVTAL----SSAAEVIATLEEEAG------MVVPAASEAAAAAEEA--TAAAASVTTTAPSPIAETITALEQEAGMVVPAATEPAAEATEAAEVATAATAATGVDGRPV-ISTPSSLP------QGMRSIEKNEEMEQAVYDDVKKEEVTAATAA-----------------APAAAVVVAAAAAADPCLSSTPTQLST--SVTASSLPPSSP---------------------------YPHSLSSITNTTIGSTKKIKQQQQQQQKQQQCRGSPSPSPSFPPNFA-----------LPPVPAVVYPMAFNESLDAGKLLAFSAYAAGRREKEIGKEGGLRLSVPPLLIALCNEVEIIYQEVRLGIAEPTDKEEKLKKTVQSVNK 632
L L GAET+W F AF+NLPP QRP D RLRLL RVY+DLS+KTSWEDV++VWRDICDSGS +HT FYEGGA+F+EGIFTRRPRE+REAA A AKKK+VKKKKA FKKM++KKKEE+++KRE+R+ EE+ ++ +A E+ E EAG +E+ E E G+ E ++ + G + E M+ T Q GK AKAE ++ G+++ E + + E G E+ Q+ +E+++ +G ++E + EE ++ + G++ + E V R V + S E +E E G VP +S E+ T+ + ++ SP T T + P A E AAE A+ A GRP + SS P +G ++ E AV + TAA + PA A+ A A P LSS P + T A SLPPS P L++ ++ S+ + Q Q++ + + + PSFPP + LPPVPA V+P+AFNESLDAGKL+A +AYAAG R + +G +SVPPLLIALCNEVEIIYQEVRLG+AEPTDKE KL+K+VQ+V K
Sbjct: 9 LAGLSGAETSWFTFLTAFANLPPSQRPSDVRLRLLHRVYKDLSSKTSWEDVRIVWRDICDSGSWKHTPFYEGGAFFVEGIFTRRPRESREAAVAEAKKKLVKKKKANFKKMLKKKKEERKLKREKRIAEEKMKQTEAQYVEKGEDEAGEVKEDMEKEGNAEELGEDEIRKILEECGNEDAADECGRIGGMKRPRPT-QEEGKEAKAEMVEQGGKKRVEVEDDDDDEGNGTEEDPQEKEDEEKEDKGTRQEGL--TEERGLSRPRNGSDGQ---GETGTGQEEVEEEVGREDGHDKDVRRVEGQRGSDGEGWTAMEMEEGEEDGKEEEVPGSSSRDHPVEQKPHTSLSLAMVGVTLSPTGSTDTTRD-------PLAAAGGGENLLAAEGDEASRAGVPRGGRPTEVGIDSSFPSTHVPAKGNGALTPTPVCETAVPATPQTASATAAGPSLAMTYQSSASRADAYCDRPAGAIPAPAQGARSP-LSSQPAEPPTFPPSLAPSLPPSLPSCPPPEGIGVDGTGLATEAQTGAEHTAIMSQLNASPSSRDPSSTTPASSRPSQSAQKRAKKAGTSLPSFPPALSPSSPAPSMTPLLPPVPAAVFPLAFNESLDAGKLVALAAYAAGLRGRSGEGDGRENISVPPLLIALCNEVEIIYQEVRLGLAEPTDKEAKLRKSVQAVRK 675
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO10G03790.1 ID=NO10G03790.1|Name=NO10G03790.1|organism=Nannochloropsis oceanica|type=mRNA|length=1896bp ATGGGGACCATGACCACCATCACCACCACCACCACGGCTAGCACCACCCC CAAATGCACTTTCACTGCCACTGCCGAAGCCCTGGTCCGCCTACCCGGGG CCGAAACGACCTGGCCTGCCTTCCAAGCCGCGTTCAGTAACCTCCCCCCT CTCCAGAGGCCACGCGACAGCCGCCTCCGCCTCCTTTTTCGTGTATATCG AGACTTGAGCGCTAAGACCAGTTGGGAGGACGTCAAAGTCGTCTGGAGAG ATATATGTGACAGTGGCTCGAAGCGTCACACCACTTTTTATGAGGGTGGG GCATATTTTATTGAGGGAATTTTTACTCGTCGTCCACGCGAGGCACGGGA AGCGGCAGCAGCGGCAGCGAAGAAGAAGATGGTGAAAAAGAAGAAGGCCA AGTTTAAAAAGATGATCCAGAAGAAGAAGGAAGAGAAGAGAATGAAGAGG GAGCAACGTGTGGAGGAGGAGAGGGCGAGGAGGATGGATGCGGGCGAGGA GGAAGAGGAGGAAGGCGAGGCGGGTGGGGAGGAGGAAGAGGAGGAAGGGG TGGAAGAAGGAGGGGAAAAAGGTAAAAGGGAATGCCAAGAGAATGGTAAG GTGGGAGGCGAAGGAGAAGATAGGGGGGAGAAGAGAGCGGCTGAGGCTAT GGAAGGAGACGAAGAGACCTTGCAGGCGACGGGAAAAGTGGCAAAAGCAG AGGGCGGAAAGGAGGAGGGACAGCAGCAACAGGAAAATCAGCAGCACCAG GAGATAGAATATAAAGGCGAGCAGCTGCAACAGCAGTACATCGAAGAGAA ACAGCAAGCTGAGGGCGATCAAGAGGAGGAAATGAAGGCAGAGGAAGAGG AGTTGATAGCTATTGTACAGGTGGGTGCGGAGAGCGAGGAGACTCCTGCA GAAGCAGCAGCATCCGCAACAGCAACCACAGCAGCAGTAGTAAGAGCATC AACAAGAGCAACAATTGTTACCGCCTTATCGTCAGCGGCCGAGGTTATTG CGACGTTAGAAGAGGAAGCAGGCATGGTTGTACCAGCAGCATCAGAAGCA GCAGCAGCAGCAGAGGAAGCAACAGCAGCAGCAGCATCGGTAACAACAAC CGCACCATCACCAATAGCTGAGACCATTACTGCCCTGGAACAGGAAGCAG GCATGGTCGTACCAGCAGCGACAGAACCAGCAGCAGAAGCAACAGAGGCA GCAGAGGTGGCAACAGCAGCGACAGCAGCAACAGGAGTAGATGGGAGACC TGTTATCTCTACCCCCTCTTCTCTTCCTCAAGGAATGAGGTCAATAGAAA AAAATGAAGAAATGGAGCAGGCCGTTTATGACGACGTGAAAAAAGAGGAG GTAACAGCAGCAACAGCAGCAGCACCAGCAGCAGCAGTAGTAGTAGCAGC AGCAGCAGCGGCGGATCCTTGTCTTTCCTCCACTCCCACGCAACTCTCCA CCTCTGTCACTGCTTCGTCCCTTCCTCCATCTTCTCCTTACCCTCATTCT TTGTCTTCCATCACAAATACCACTATCGGCAGCACCAAGAAAATAAAACA GCAACAGCAGCAGCAGCAGAAGCAGCAGCAGTGTCGTGGCTCCCCATCTC CTTCTCCTTCCTTCCCTCCCAATTTCGCCCTACCCCCTGTACCAGCTGTT GTCTACCCCATGGCCTTCAACGAGTCTCTAGATGCGGGCAAGCTGCTAGC TTTCTCCGCCTATGCTGCCGGGCGCCGAGAGAAGGAGATAGGAAAGGAGG GAGGGCTAAGGCTGTCGGTGCCCCCATTATTGATTGCCTTGTGTAATGAG GTGGAGATAATCTATCAGGAGGTGCGGTTGGGGATCGCTGAGCCAACGGA CAAGGAGGAAAAGCTCAAGAAAACGGTACAGAGTGTAAATAAATAA back to topprotein sequence of NO10G03790.1 >NO10G03790.1-protein ID=NO10G03790.1-protein|Name=NO10G03790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=632bp MGTMTTITTTTTASTTPKCTFTATAEALVRLPGAETTWPAFQAAFSNLPP LQRPRDSRLRLLFRVYRDLSAKTSWEDVKVVWRDICDSGSKRHTTFYEGG AYFIEGIFTRRPREAREAAAAAAKKKMVKKKKAKFKKMIQKKKEEKRMKR EQRVEEERARRMDAGEEEEEEGEAGGEEEEEEGVEEGGEKGKRECQENGK VGGEGEDRGEKRAAEAMEGDEETLQATGKVAKAEGGKEEGQQQQENQQHQ EIEYKGEQLQQQYIEEKQQAEGDQEEEMKAEEEELIAIVQVGAESEETPA EAAASATATTAAVVRASTRATIVTALSSAAEVIATLEEEAGMVVPAASEA AAAAEEATAAAASVTTTAPSPIAETITALEQEAGMVVPAATEPAAEATEA AEVATAATAATGVDGRPVISTPSSLPQGMRSIEKNEEMEQAVYDDVKKEE VTAATAAAPAAAVVVAAAAAADPCLSSTPTQLSTSVTASSLPPSSPYPHS LSSITNTTIGSTKKIKQQQQQQQKQQQCRGSPSPSPSFPPNFALPPVPAV VYPMAFNESLDAGKLLAFSAYAAGRREKEIGKEGGLRLSVPPLLIALCNE VEIIYQEVRLGIAEPTDKEEKLKKTVQSVNK* back to topmRNA from alignment at chr10:1097931..1099826+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO10G03790.1 ID=NO10G03790.1|Name=NO10G03790.1|organism=Nannochloropsis oceanica|type=mRNA|length=1896bp|location=Sequence derived from alignment at chr10:1097931..1099826+ (Nannochloropsis oceanica) ATGGGGACCATGACCACCATCACCACCACCACCACGGCTAGCACCACCCC
CAAATGCACTTTCACTGCCACTGCCGAAGCCCTGGTCCGCCTACCCGGGG
CCGAAACGACCTGGCCTGCCTTCCAAGCCGCGTTCAGTAACCTCCCCCCT
CTCCAGAGGCCACGCGACAGCCGCCTCCGCCTCCTTTTTCGTGTATATCG
AGACTTGAGCGCTAAGACCAGTTGGGAGGACGTCAAAGTCGTCTGGAGAG
ATATATGTGACAGTGGCTCGAAGCGTCACACCACTTTTTATGAGGGTGGG
GCATATTTTATTGAGGGAATTTTTACTCGTCGTCCACGCGAGGCACGGGA
AGCGGCAGCAGCGGCAGCGAAGAAGAAGATGGTGAAAAAGAAGAAGGCCA
AGTTTAAAAAGATGATCCAGAAGAAGAAGGAAGAGAAGAGAATGAAGAGG
GAGCAACGTGTGGAGGAGGAGAGGGCGAGGAGGATGGATGCGGGCGAGGA
GGAAGAGGAGGAAGGCGAGGCGGGTGGGGAGGAGGAAGAGGAGGAAGGGG
TGGAAGAAGGAGGGGAAAAAGGTAAAAGGGAATGCCAAGAGAATGGTAAG
GTGGGAGGCGAAGGAGAAGATAGGGGGGAGAAGAGAGCGGCTGAGGCTAT
GGAAGGAGACGAAGAGACCTTGCAGGCGACGGGAAAAGTGGCAAAAGCAG
AGGGCGGAAAGGAGGAGGGACAGCAGCAACAGGAAAATCAGCAGCACCAG
GAGATAGAATATAAAGGCGAGCAGCTGCAACAGCAGTACATCGAAGAGAA
ACAGCAAGCTGAGGGCGATCAAGAGGAGGAAATGAAGGCAGAGGAAGAGG
AGTTGATAGCTATTGTACAGGTGGGTGCGGAGAGCGAGGAGACTCCTGCA
GAAGCAGCAGCATCCGCAACAGCAACCACAGCAGCAGTAGTAAGAGCATC
AACAAGAGCAACAATTGTTACCGCCTTATCGTCAGCGGCCGAGGTTATTG
CGACGTTAGAAGAGGAAGCAGGCATGGTTGTACCAGCAGCATCAGAAGCA
GCAGCAGCAGCAGAGGAAGCAACAGCAGCAGCAGCATCGGTAACAACAAC
CGCACCATCACCAATAGCTGAGACCATTACTGCCCTGGAACAGGAAGCAG
GCATGGTCGTACCAGCAGCGACAGAACCAGCAGCAGAAGCAACAGAGGCA
GCAGAGGTGGCAACAGCAGCGACAGCAGCAACAGGAGTAGATGGGAGACC
TGTTATCTCTACCCCCTCTTCTCTTCCTCAAGGAATGAGGTCAATAGAAA
AAAATGAAGAAATGGAGCAGGCCGTTTATGACGACGTGAAAAAAGAGGAG
GTAACAGCAGCAACAGCAGCAGCACCAGCAGCAGCAGTAGTAGTAGCAGC
AGCAGCAGCGGCGGATCCTTGTCTTTCCTCCACTCCCACGCAACTCTCCA
CCTCTGTCACTGCTTCGTCCCTTCCTCCATCTTCTCCTTACCCTCATTCT
TTGTCTTCCATCACAAATACCACTATCGGCAGCACCAAGAAAATAAAACA
GCAACAGCAGCAGCAGCAGAAGCAGCAGCAGTGTCGTGGCTCCCCATCTC
CTTCTCCTTCCTTCCCTCCCAATTTCGCCCTACCCCCTGTACCAGCTGTT
GTCTACCCCATGGCCTTCAACGAGTCTCTAGATGCGGGCAAGCTGCTAGC
TTTCTCCGCCTATGCTGCCGGGCGCCGAGAGAAGGAGATAGGAAAGGAGG
GAGGGCTAAGGCTGTCGGTGCCCCCATTATTGATTGCCTTGTGTAATGAG
GTGGAGATAATCTATCAGGAGGTGCGGTTGGGGATCGCTGAGCCAACGGA
CAAGGAGGAAAAGCTCAAGAAAACGGTACAGAGTGTAAATAAATAA back to topCoding sequence (CDS) from alignment at chr10:1097931..1099826+ >NO10G03790.1 ID=NO10G03790.1|Name=NO10G03790.1|organism=Nannochloropsis oceanica|type=CDS|length=1896bp|location=Sequence derived from alignment at chr10:1097931..1099826+ (Nannochloropsis oceanica) ATGGGGACCATGACCACCATCACCACCACCACCACGGCTAGCACCACCCC CAAATGCACTTTCACTGCCACTGCCGAAGCCCTGGTCCGCCTACCCGGGG CCGAAACGACCTGGCCTGCCTTCCAAGCCGCGTTCAGTAACCTCCCCCCT CTCCAGAGGCCACGCGACAGCCGCCTCCGCCTCCTTTTTCGTGTATATCG AGACTTGAGCGCTAAGACCAGTTGGGAGGACGTCAAAGTCGTCTGGAGAG ATATATGTGACAGTGGCTCGAAGCGTCACACCACTTTTTATGAGGGTGGG GCATATTTTATTGAGGGAATTTTTACTCGTCGTCCACGCGAGGCACGGGA AGCGGCAGCAGCGGCAGCGAAGAAGAAGATGGTGAAAAAGAAGAAGGCCA AGTTTAAAAAGATGATCCAGAAGAAGAAGGAAGAGAAGAGAATGAAGAGG GAGCAACGTGTGGAGGAGGAGAGGGCGAGGAGGATGGATGCGGGCGAGGA GGAAGAGGAGGAAGGCGAGGCGGGTGGGGAGGAGGAAGAGGAGGAAGGGG TGGAAGAAGGAGGGGAAAAAGGTAAAAGGGAATGCCAAGAGAATGGTAAG GTGGGAGGCGAAGGAGAAGATAGGGGGGAGAAGAGAGCGGCTGAGGCTAT GGAAGGAGACGAAGAGACCTTGCAGGCGACGGGAAAAGTGGCAAAAGCAG AGGGCGGAAAGGAGGAGGGACAGCAGCAACAGGAAAATCAGCAGCACCAG GAGATAGAATATAAAGGCGAGCAGCTGCAACAGCAGTACATCGAAGAGAA ACAGCAAGCTGAGGGCGATCAAGAGGAGGAAATGAAGGCAGAGGAAGAGG AGTTGATAGCTATTGTACAGGTGGGTGCGGAGAGCGAGGAGACTCCTGCA GAAGCAGCAGCATCCGCAACAGCAACCACAGCAGCAGTAGTAAGAGCATC AACAAGAGCAACAATTGTTACCGCCTTATCGTCAGCGGCCGAGGTTATTG CGACGTTAGAAGAGGAAGCAGGCATGGTTGTACCAGCAGCATCAGAAGCA GCAGCAGCAGCAGAGGAAGCAACAGCAGCAGCAGCATCGGTAACAACAAC CGCACCATCACCAATAGCTGAGACCATTACTGCCCTGGAACAGGAAGCAG GCATGGTCGTACCAGCAGCGACAGAACCAGCAGCAGAAGCAACAGAGGCA GCAGAGGTGGCAACAGCAGCGACAGCAGCAACAGGAGTAGATGGGAGACC TGTTATCTCTACCCCCTCTTCTCTTCCTCAAGGAATGAGGTCAATAGAAA AAAATGAAGAAATGGAGCAGGCCGTTTATGACGACGTGAAAAAAGAGGAG GTAACAGCAGCAACAGCAGCAGCACCAGCAGCAGCAGTAGTAGTAGCAGC AGCAGCAGCGGCGGATCCTTGTCTTTCCTCCACTCCCACGCAACTCTCCA CCTCTGTCACTGCTTCGTCCCTTCCTCCATCTTCTCCTTACCCTCATTCT TTGTCTTCCATCACAAATACCACTATCGGCAGCACCAAGAAAATAAAACA GCAACAGCAGCAGCAGCAGAAGCAGCAGCAGTGTCGTGGCTCCCCATCTC CTTCTCCTTCCTTCCCTCCCAATTTCGCCCTACCCCCTGTACCAGCTGTT GTCTACCCCATGGCCTTCAACGAGTCTCTAGATGCGGGCAAGCTGCTAGC TTTCTCCGCCTATGCTGCCGGGCGCCGAGAGAAGGAGATAGGAAAGGAGG GAGGGCTAAGGCTGTCGGTGCCCCCATTATTGATTGCCTTGTGTAATGAG GTGGAGATAATCTATCAGGAGGTGCGGTTGGGGATCGCTGAGCCAACGGA CAAGGAGGAAAAGCTCAAGAAAACGGTACAGAGTGTAAATAAATAA back to top
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