NO10G03610, NO10G03610 (gene) Nannochloropsis oceanica

Overview
NameNO10G03610
Unique NameNO10G03610
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2103
Alignment locationchr10:1033943..1036045 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:1033943..1036045 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO10G03610 vs. NCBI_GenBank
Match: XP_005854419.1 (hypothetical protein NGA_0231800 [Nannochloropsis gaditana CCMP526] >EKU21945.1 hypothetical protein NGA_0231800 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 297.4 bits (760), Expect = 4.800e-77
Identity = 153/271 (56.46%), Postives = 197/271 (72.69%), Query Frame = 0
Query:    1 MRFLGLRLAAVLVVATAMGQASDKNGGPLNRVKRMLQGDTTTTAATAKAFISDHEIQDSWATDPILKSAKRLMNGDHANLVVDMSLGNEVKEIFSDPDTTYAMLQATPLFNVLPGVKALRAKAKEDFTKTDSMAILETYRKFVATAIKGMKDMANPVALAETMQKVANSMQPSTLQADGTHRALTTEERRMTELVARVENGDSAAVDELQDNVADSLWNGAIDLSELKGKVPDIVEQLRQITMDEDPAFFDLITGDDPLVKKVLTDPSMLF 272
            MRF  + L    V A    + S+K GGP+ RVKRM+   T  TAAT+ +   + +IQDSW+ D +L  A+RL+NGDHA ++ DMS+G E++EIF +P+ +Y +LQ  P+F VL GVK L AK KE FTK DS+++LE+YR FV+TAIK MKDMA+PV +A TMQK +++M P T   DG+HRALT EERRMTELV RVE GD  A  +L D +ADSLW   IDLSE KGK P+ ++ LR+I M E+P  FDLITG+DPLV+KVL+DPSMLF
Sbjct:    1 MRFHVIALLIGAVTACHAAE-SEKKGGPMQRVKRMMA--TDATAATSTSAGEEEDIQDSWSFDSVLSGARRLINGDHAGILADMSMGKEMQEIFENPEVSYQLLQVFPMFKVLNGVKELSAKPKELFTKADSLSVLESYRNFVSTAIKNMKDMADPVGMATTMQKYSDAMSPVTQNPDGSHRALTEEERRMTELVRRVEEGDPEATGQLHDRIADSLWGNTIDLSEFKGKEPEALKVLREIVMKEEPKVFDLITGEDPLVRKVLSDPSMLF 268          
BLAST of NO10G03610 vs. NCBI_GenBank
Match: EWM25317.1 (hypothetical protein Naga_100281g8 [Nannochloropsis gaditana])

HSP 1 Score: 207.2 bits (526), Expect = 6.500e-50
Identity = 110/199 (55.28%), Postives = 143/199 (71.86%), Query Frame = 0
Query:    1 MRFLGLRLAAVLVVATAMGQASDKNGGPLNRVKRMLQGDTTTTAATAKAFISDHEIQDSWATDPILKSAKRLMNGDHANLVVDMSLGNEVKEIFSDPDTTYAMLQATPLFNVLPGVKALRAKAKEDFTKTDSMAILETYRKFVATAIKGMKDMANPVALAETMQKVANSMQPSTLQADGTHRALTTEERRMTELVARVE 200
            MRF  + L    V A    + S+K GGP+ RVKRM+   T  TAATA +   + +IQDSW+ D +L  A+RL+NGDHA ++ DMS+G E++EIF +P+ +Y +LQ  P+F VL GVK L AK KE FTK DS+++LE+YR FV+TAIK MKDMA+PV +A TMQK +++M P T   DG+HRALT EERRMTELV RVE
Sbjct:    1 MRFHVIALLIGAVTACHAAE-SEKKGGPMQRVKRMMA--TDATAATATSAGEEEDIQDSWSFDSVLSGARRLINGDHAGILADMSMGKEMQEIFENPEVSYQLLQVFPMFKVLNGVKELSAKPKELFTKADSLSVLESYRNFVSTAIKNMKDMADPVGMATTMQKYSDAMSPVTQNPDGSHRALTEEERRMTELVRRVE 196          
BLAST of NO10G03610 vs. NCBI_GenBank
Match: EWM20189.1 (hypothetical protein Naga_101121g1 [Nannochloropsis gaditana])

HSP 1 Score: 114.8 bits (286), Expect = 4.400e-22
Identity = 69/222 (31.08%), Postives = 116/222 (52.25%), Query Frame = 0
Query:   57 QDSWATDPILKSAKRLMNGDHANLVVDMSLGNEVKEIFSDPDTTYAMLQATPLFNVLPGVKALRAKAKEDFTKTDSMAILETYRKFVATAIKGMKDMANPVALAETMQKVANSMQPSTLQADGTHRALTTE----ERRMTELVARVENGDSAAVDELQDNVADSLWNGAIDLSELK-GKVPDIVEQ------LRQITMDEDPAFFDLITGDDPLVKKVLTDP 268
            +DSWA +  LK A+RL++GDH +++ +M L  +++ I+S P     +L+A P+  +LPG  AL  K  +D+T  D + IL   R F   A++   +  +P    E+++K A             HR L  E    + ++  L  +V  GD  A  E+ D V D LW G +D  ++  GK P  + +      +R     ++PA +D++T DDP + +++TDP
Sbjct:  101 KDSWAEEWDLKLARRLLDGDHFSVLKEMVLSKDLEVIWSTPYAARRLLEANPILKMLPGAAALAKKDLDDWTPADGLQILSRLRLFAKDAMEKTMENIDPSKSMESLEKFA-------------HRGLREEHEGGDPKLKALFDKVAAGDDTAAKEVHDVVFDELWGGLVDKEQMGFGKEPGTMFEPEASKIMRDYVRTQEPALWDMMTMDDPFITQLMTDP 309          
BLAST of NO10G03610 vs. NCBI_GenBank
Match: XP_005852429.1 (hypothetical protein NGA_0725900 [Nannochloropsis gaditana CCMP526] >EKU23403.1 hypothetical protein NGA_0725900 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 105.9 bits (263), Expect = 2.100e-19
Identity = 66/215 (30.70%), Postives = 110/215 (51.16%), Query Frame = 0
Query:   57 QDSWATDPILKSAKRLMNGDHANLVVDMSLGNEVKEIFSDPDTTYAMLQATPLFNVLPGVKALRAKAKEDFTKTDSMAILETYRKFVATAIKGMKDMANPVALAETMQKVANSMQPSTLQADGTHRALTTE----ERRMTELVARVENGDSAAVDELQDNVADSLWNGAIDLSELK-GKVPDIVEQ------LRQITMDEDPAFFDLITGDDPLV 261
            +DSWA +  LK A+RL++GDH +++ +M L  +++ I+S P     +L+A P+  +LPG  AL  K  +D+T  D + IL   R F   A++   +  +P    E+++K A             HR L  E    + ++  L  +V  GD  A  E+ D V D LW G +D  ++  GK P  + +      +R     ++PA +D++T DDP +
Sbjct:  101 KDSWAEEWDLKLARRLLDGDHFSVLKEMVLSKDLEVIWSTPYAARRLLEANPILKMLPGAAALAKKDLDDWTPADGLQILSRLRLFAKDAMEKTMENIDPSKSMESLEKFA-------------HRGLREEHEGGDPKLKALFDKVAAGDDTAAKEVHDVVFDELWGGLVDKEQMGFGKEPGTMFEPEASKIMRDYVRTQEPALWDMMTMDDPFI 302          
BLAST of NO10G03610 vs. NCBI_GenBank
Match: XP_005854650.1 (hypothetical protein NGA_0195700 [Nannochloropsis gaditana CCMP526] >EKU21707.1 hypothetical protein NGA_0195700 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 65.1 bits (157), Expect = 4.000e-7
Identity = 45/182 (24.73%), Postives = 82/182 (45.05%), Query Frame = 0
Query:   88 NEVKEIFSDPDTTYAMLQATPLFNVLPGVKALRAKAKEDFTKTDSMAILETYRKFVATAIKGMKDMANPVALAETMQKVANSMQPSTLQADGTHRALTTEERRMTELVARVENGDSAAVDELQDNVADSLWNGAIDLSEL--KGKVPDIVEQLRQITMDEDPAFFDLITGDDPLVKKVLTDP 268
            +E+K  +SDP     +   TP       ++ L   +KE  T  D +  +ET++  +   +  ++ + +P  +A  M   +N   P                     L+AR++ G+  A  ELQ  + D    G IDL+E+   G+ P I+++ R+    E+P  +D I  +DP+ +K +  P
Sbjct:    9 DELKATWSDPVVFRFLRDQTPFLKAFKPLRPL--FSKEALTPQDGVDAVETFKNAMLKVLATIEAVRDPEGMATLMFNYSNLQDP-----------------EWVSLIARLQAGEKEAQLELQQYILDRELGGLIDLNEMGFDGQEPSILKEARETVQREEPELWDSIFSEDPIARKYMEAP 171          
The following BLAST results are available for this feature:
BLAST of NO10G03610 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 5
Match NameE-valueIdentityDescription
XP_005854419.14.800e-7756.46hypothetical protein NGA_0231800 [Nannochloropsis ... [more]
EWM25317.16.500e-5055.28hypothetical protein Naga_100281g8 [Nannochloropsi... [more]
EWM20189.14.400e-2231.08hypothetical protein Naga_101121g1 [Nannochloropsi... [more]
XP_005852429.12.100e-1930.70hypothetical protein NGA_0725900 [Nannochloropsis ... [more]
XP_005854650.14.000e-724.73hypothetical protein NGA_0195700 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G03610.1NO10G03610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G03610.1NO10G03610.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G03610 ID=NO10G03610|Name=NO10G03610|organism=Nannochloropsis oceanica|type=gene|length=2103bp
AACGCTTTGACTTGTGTCGCATGCGCCCCGTCACGCGGCTGGCCAACAGT
GCCCTCTGCCATGCTTGGTGTGAGACACGTAGTCACGACAGGCTCGACGG
CGAAAATAGGTAGCAAGGGGAAGAGGAGGCGCAATACAAGGAACTTTACC
TGTGGCCTTTCCCCCTTGCTCACCCTTCCGTCGCTACGGTATGGTGCTCT
ATTGCTCGGGCTACTCATCAGCACTCACAAAGCTCTTCTCCTCCGTTCTC
TACTCTCATCTACATAGACAGCAACACACACGTTGTATTCCTTTCCCCAA
AATATGCGCTTTCTTGGTCTTCGCCTCGCCGCCGTGCTCGTGGTCGCCAC
TGCCATGGGCCAGGCCTCGGACAAGAACGGTGGCCCCTTGAATCGTGTCA
AGCGCATGCTTCAGGGAGACACCACGACCACGGCGGCGACAGCAAAGGCC
TTTATCAGCGACCATGAAATACAAGACTCGTGGGCCACTGATCCCATCCT
CAAGAGCGCCAAACGCCTTATGAATGGCGATCACGCCAACCTAGTCGTTG
ACATGAGCTTGGGCAATGAGGTGAAAGAGATTTTCAGTGATCCGGACACC
ACTTACGCGATGTTGCAAGgtaagacagagggagagactgtgctcatgga
acagatgaaaaggcaacgacctgtggctcgtcactcagcattttccccgt
ttccctgcgcccgcccgcccttcctccctcttccatcctcttcctgcagC
CACACCCTTGTTCAATGTGTTACCCGGCGTGAAGGCCTTGAGAGCCAAGG
CCAAAGAGGACTTCACGAAAACAGATgtacgtattacaagagaaagcgaa
tctaagaaaagtatgcattccttcccctccacagaccctcggcgtccttc
tcttcaaaaagggagagaatcaagcagctcttgtatccttcccttggaga
agatcaaatgctcgcttttcgcatgtgcttccttttttcctttgcttcca
tccctgacatcacgtctttctcattccatcacacacgcacttcatcgaaa
ttatagAGCATGGCCATCCTTGAGACCTATCGCAAGTTTGTGGCGACGGC
CATCAAGGGCATGAAAGACATGGCGAACCCCGTCGCTCTAGCCGAAACCA
TGCAGAAGGTCGCGAACTCAATGCAGCCCAGCACTCTGCAGGCTGATGGC
ACCCACCGGGCCTTGACGACGGAGGAACGGCGCATGACTGAGCTTGTCGC
CCGCGTCGAGgtatgtttctgtctttgtgtggcgatacgtcatcccttca
ttgcgttccttatccctcggctgacatttctcatatgaatttaacgtgca
ccccacccacagAATGGCGACTCTGCCGCCGTCGATGAACTTCAAGACAA
CGTGGCCGACAGCTTGTGGAATGGAGgtaagcacacgatacttttcgcaa
tatgtgggtgtgtgaatggggcgtttatcctcaactacgtgacctctttc
attctgtatagctattcctgggggctttcgtatgcgatgaaatgagttgt
gggaaggctacatgcttgcggatgaatgtcctttgctattctttctctga
aatgtctggtctcagtcaactttctacgtgatagtccactccaacaacca
ctccccgcctcgtctagtttttccccccatcacaccttccttgcgatagc
cacggctttgttctaatcaatatcaagcgtcatttctgctgggtgactaa
atttcgtcactctggatgacaaagtttctctctcaatgattcaccctttt
cttccccactctctaacccccgcccagCTATCGATCTCTCGGAGCTCAAG
GGCAAAGTACCGGACATCGTCGAGCAGCTCCGCCAAATCACCATGGACGA
GGATCCGGCGTTCTTCGACCTCATCACGGGCGACGACCCTCTTGTGAAAA
Agtacgttcaaagagagaaaagcagagaaggggaagggagaaaaaggcaa
gcagcacaggcacttactttgtatttctacacaaccattacatagGGTGC
TCACGGATCCCAGCATGCTCTTCGGAGTCGGGGCTTCCATGGGCGACCAG
TAA
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protein sequence of NO10G03610.1

>NO10G03610.1-protein ID=NO10G03610.1-protein|Name=NO10G03610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=281bp
MRFLGLRLAAVLVVATAMGQASDKNGGPLNRVKRMLQGDTTTTAATAKAF
ISDHEIQDSWATDPILKSAKRLMNGDHANLVVDMSLGNEVKEIFSDPDTT
YAMLQATPLFNVLPGVKALRAKAKEDFTKTDSMAILETYRKFVATAIKGM
KDMANPVALAETMQKVANSMQPSTLQADGTHRALTTEERRMTELVARVEN
GDSAAVDELQDNVADSLWNGAIDLSELKGKVPDIVEQLRQITMDEDPAFF
DLITGDDPLVKKVLTDPSMLFGVGASMGDQ*
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Synonyms
Publications