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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr10 | genome | chr10:1033943..1036045 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO10G03610.1 vs.
Match: XP_005854419.1 (hypothetical protein NGA_0231800 [Nannochloropsis gaditana CCMP526]; EKU21945.1 hypothetical protein NGA_0231800 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 297.7 bits (761), Expect = 3.700e-77 Identity = 153/271 (56.46%), Postives = 197/271 (72.69%), Query Frame = 0
Query: 1 MRFLGLRLAAVLVVATAMGQASDKNGGPLNRVKRMLQGDTTTTAATAKAFISDHEIQDSWATDPILKSAKRLMNGDHANLVVDMSLGNEVKEIFSDPDTTYAMLQATPLFNVLPGVKALRAKAKEDFTKTDSMAILETYRKFVATAIKGMKDMANPVALAETMQKVANSMQPSTLQADGTHRALTTEERRMTELVARVENGDSAAVDELQDNVADSLWNGAIDLSELKGKVPDIVEQLRQITMDEDPAFFDLITGDDPLVKKVLTDPSMLF 272
MRF + L V A + S+K GGP+ RVKRM+ D T AAT+ + + +IQDSW+ D +L A+RL+NGDHA ++ DMS+G E++EIF +P+ +Y +LQ P+F VL GVK L AK KE FTK DS+++LE+YR FV+TAIK MKDMA+PV +A TMQK +++M P T DG+HRALT EERRMTELV RVE GD A +L D +ADSLW IDLSE KGK P+ ++ LR+I M E+P FDLITG+DPLV+KVL+DPSMLF
Sbjct: 1 MRFHVIALLIGAVTACHAAE-SEKKGGPMQRVKRMMATDAT--AATSTSAGEEEDIQDSWSFDSVLSGARRLINGDHAGILADMSMGKEMQEIFENPEVSYQLLQVFPMFKVLNGVKELSAKPKELFTKADSLSVLESYRNFVSTAIKNMKDMADPVGMATTMQKYSDAMSPVTQNPDGSHRALTEEERRMTELVRRVEEGDPEATGQLHDRIADSLWGNTIDLSEFKGKEPEALKVLREIVMKEEPKVFDLITGEDPLVRKVLSDPSMLF 268
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO10G03610.1 ID=NO10G03610.1|Name=NO10G03610.1|organism=Nannochloropsis oceanica|type=mRNA|length=1146bp AACGCTTTGACTTGTGTCGCATGCGCCCCGTCACGCGGCTGGCCAACAGT GCCCTCTGCCATGCTTGGTGTGAGACACGTAGTCACGACAGGCTCGACGG CGAAAATAGGTAGCAAGGGGAAGAGGAGGCGCAATACAAGGAACTTTACC TGTGGCCTTTCCCCCTTGCTCACCCTTCCGTCGCTACGGTATGGTGCTCT ATTGCTCGGGCTACTCATCAGCACTCACAAAGCTCTTCTCCTCCGTTCTC TACTCTCATCTACATAGACAGCAACACACACGTTGTATTCCTTTCCCCAA AATATGCGCTTTCTTGGTCTTCGCCTCGCCGCCGTGCTCGTGGTCGCCAC TGCCATGGGCCAGGCCTCGGACAAGAACGGTGGCCCCTTGAATCGTGTCA AGCGCATGCTTCAGGGAGACACCACGACCACGGCGGCGACAGCAAAGGCC TTTATCAGCGACCATGAAATACAAGACTCGTGGGCCACTGATCCCATCCT CAAGAGCGCCAAACGCCTTATGAATGGCGATCACGCCAACCTAGTCGTTG ACATGAGCTTGGGCAATGAGGTGAAAGAGATTTTCAGTGATCCGGACACC ACTTACGCGATGTTGCAAGCCACACCCTTGTTCAATGTGTTACCCGGCGT GAAGGCCTTGAGAGCCAAGGCCAAAGAGGACTTCACGAAAACAGATAGCA TGGCCATCCTTGAGACCTATCGCAAGTTTGTGGCGACGGCCATCAAGGGC ATGAAAGACATGGCGAACCCCGTCGCTCTAGCCGAAACCATGCAGAAGGT CGCGAACTCAATGCAGCCCAGCACTCTGCAGGCTGATGGCACCCACCGGG CCTTGACGACGGAGGAACGGCGCATGACTGAGCTTGTCGCCCGCGTCGAG AATGGCGACTCTGCCGCCGTCGATGAACTTCAAGACAACGTGGCCGACAG CTTGTGGAATGGAGCTATCGATCTCTCGGAGCTCAAGGGCAAAGTACCGG ACATCGTCGAGCAGCTCCGCCAAATCACCATGGACGAGGATCCGGCGTTC TTCGACCTCATCACGGGCGACGACCCTCTTGTGAAAAAGGTGCTCACGGA TCCCAGCATGCTCTTCGGAGTCGGGGCTTCCATGGGCGACCAGTAA back to topprotein sequence of NO10G03610.1 >NO10G03610.1-protein ID=NO10G03610.1-protein|Name=NO10G03610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=281bp MRFLGLRLAAVLVVATAMGQASDKNGGPLNRVKRMLQGDTTTTAATAKAF ISDHEIQDSWATDPILKSAKRLMNGDHANLVVDMSLGNEVKEIFSDPDTT YAMLQATPLFNVLPGVKALRAKAKEDFTKTDSMAILETYRKFVATAIKGM KDMANPVALAETMQKVANSMQPSTLQADGTHRALTTEERRMTELVARVEN GDSAAVDELQDNVADSLWNGAIDLSELKGKVPDIVEQLRQITMDEDPAFF DLITGDDPLVKKVLTDPSMLFGVGASMGDQ* back to topmRNA from alignment at chr10:1033943..1036045+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO10G03610.1 ID=NO10G03610.1|Name=NO10G03610.1|organism=Nannochloropsis oceanica|type=mRNA|length=2103bp|location=Sequence derived from alignment at chr10:1033943..1036045+ (Nannochloropsis oceanica) AACGCTTTGACTTGTGTCGCATGCGCCCCGTCACGCGGCTGGCCAACAGT
GCCCTCTGCCATGCTTGGTGTGAGACACGTAGTCACGACAGGCTCGACGG
CGAAAATAGGTAGCAAGGGGAAGAGGAGGCGCAATACAAGGAACTTTACC
TGTGGCCTTTCCCCCTTGCTCACCCTTCCGTCGCTACGGTATGGTGCTCT
ATTGCTCGGGCTACTCATCAGCACTCACAAAGCTCTTCTCCTCCGTTCTC
TACTCTCATCTACATAGACAGCAACACACACGTTGTATTCCTTTCCCCAA
AATATGCGCTTTCTTGGTCTTCGCCTCGCCGCCGTGCTCGTGGTCGCCAC
TGCCATGGGCCAGGCCTCGGACAAGAACGGTGGCCCCTTGAATCGTGTCA
AGCGCATGCTTCAGGGAGACACCACGACCACGGCGGCGACAGCAAAGGCC
TTTATCAGCGACCATGAAATACAAGACTCGTGGGCCACTGATCCCATCCT
CAAGAGCGCCAAACGCCTTATGAATGGCGATCACGCCAACCTAGTCGTTG
ACATGAGCTTGGGCAATGAGGTGAAAGAGATTTTCAGTGATCCGGACACC
ACTTACGCGATGTTGCAAGGTAAGACAGAGGGAGAGACTGTGCTCATGGA
ACAGATGAAAAGGCAACGACCTGTGGCTCGTCACTCAGCATTTTCCCCGT
TTCCCTGCGCCCGCCCGCCCTTCCTCCCTCTTCCATCCTCTTCCTGCAGC
CACACCCTTGTTCAATGTGTTACCCGGCGTGAAGGCCTTGAGAGCCAAGG
CCAAAGAGGACTTCACGAAAACAGATGTACGTATTACAAGAGAAAGCGAA
TCTAAGAAAAGTATGCATTCCTTCCCCTCCACAGACCCTCGGCGTCCTTC
TCTTCAAAAAGGGAGAGAATCAAGCAGCTCTTGTATCCTTCCCTTGGAGA
AGATCAAATGCTCGCTTTTCGCATGTGCTTCCTTTTTTCCTTTGCTTCCA
TCCCTGACATCACGTCTTTCTCATTCCATCACACACGCACTTCATCGAAA
TTATAGAGCATGGCCATCCTTGAGACCTATCGCAAGTTTGTGGCGACGGC
CATCAAGGGCATGAAAGACATGGCGAACCCCGTCGCTCTAGCCGAAACCA
TGCAGAAGGTCGCGAACTCAATGCAGCCCAGCACTCTGCAGGCTGATGGC
ACCCACCGGGCCTTGACGACGGAGGAACGGCGCATGACTGAGCTTGTCGC
CCGCGTCGAGGTATGTTTCTGTCTTTGTGTGGCGATACGTCATCCCTTCA
TTGCGTTCCTTATCCCTCGGCTGACATTTCTCATATGAATTTAACGTGCA
CCCCACCCACAGAATGGCGACTCTGCCGCCGTCGATGAACTTCAAGACAA
CGTGGCCGACAGCTTGTGGAATGGAGGTAAGCACACGATACTTTTCGCAA
TATGTGGGTGTGTGAATGGGGCGTTTATCCTCAACTACGTGACCTCTTTC
ATTCTGTATAGCTATTCCTGGGGGCTTTCGTATGCGATGAAATGAGTTGT
GGGAAGGCTACATGCTTGCGGATGAATGTCCTTTGCTATTCTTTCTCTGA
AATGTCTGGTCTCAGTCAACTTTCTACGTGATAGTCCACTCCAACAACCA
CTCCCCGCCTCGTCTAGTTTTTCCCCCCATCACACCTTCCTTGCGATAGC
CACGGCTTTGTTCTAATCAATATCAAGCGTCATTTCTGCTGGGTGACTAA
ATTTCGTCACTCTGGATGACAAAGTTTCTCTCTCAATGATTCACCCTTTT
CTTCCCCACTCTCTAACCCCCGCCCAGCTATCGATCTCTCGGAGCTCAAG
GGCAAAGTACCGGACATCGTCGAGCAGCTCCGCCAAATCACCATGGACGA
GGATCCGGCGTTCTTCGACCTCATCACGGGCGACGACCCTCTTGTGAAAA
AGTACGTTCAAAGAGAGAAAAGCAGAGAAGGGGAAGGGAGAAAAAGGCAA
GCAGCACAGGCACTTACTTTGTATTTCTACACAACCATTACATAGGGTGC
TCACGGATCCCAGCATGCTCTTCGGAGTCGGGGCTTCCATGGGCGACCAG
TAA back to topCoding sequence (CDS) from alignment at chr10:1033943..1036045+ >NO10G03610.1 ID=NO10G03610.1|Name=NO10G03610.1|organism=Nannochloropsis oceanica|type=CDS|length=843bp|location=Sequence derived from alignment at chr10:1033943..1036045+ (Nannochloropsis oceanica) ATGCGCTTTCTTGGTCTTCGCCTCGCCGCCGTGCTCGTGGTCGCCACTGC CATGGGCCAGGCCTCGGACAAGAACGGTGGCCCCTTGAATCGTGTCAAGC GCATGCTTCAGGGAGACACCACGACCACGGCGGCGACAGCAAAGGCCTTT ATCAGCGACCATGAAATACAAGACTCGTGGGCCACTGATCCCATCCTCAA GAGCGCCAAACGCCTTATGAATGGCGATCACGCCAACCTAGTCGTTGACA TGAGCTTGGGCAATGAGGTGAAAGAGATTTTCAGTGATCCGGACACCACT TACGCGATGTTGCAAGCCACACCCTTGTTCAATGTGTTACCCGGCGTGAA GGCCTTGAGAGCCAAGGCCAAAGAGGACTTCACGAAAACAGATAGCATGG CCATCCTTGAGACCTATCGCAAGTTTGTGGCGACGGCCATCAAGGGCATG AAAGACATGGCGAACCCCGTCGCTCTAGCCGAAACCATGCAGAAGGTCGC GAACTCAATGCAGCCCAGCACTCTGCAGGCTGATGGCACCCACCGGGCCT TGACGACGGAGGAACGGCGCATGACTGAGCTTGTCGCCCGCGTCGAGAAT GGCGACTCTGCCGCCGTCGATGAACTTCAAGACAACGTGGCCGACAGCTT GTGGAATGGAGCTATCGATCTCTCGGAGCTCAAGGGCAAAGTACCGGACA TCGTCGAGCAGCTCCGCCAAATCACCATGGACGAGGATCCGGCGTTCTTC GACCTCATCACGGGCGACGACCCTCTTGTGAAAAAGGTGCTCACGGATCC CAGCATGCTCTTCGGAGTCGGGGCTTCCATGGGCGACCAGTAA back to top
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