NO10G03610.1, NO10G03610.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G03610.1
Unique NameNO10G03610.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1146
Alignment locationchr10:1033943..1036045 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:1033943..1036045 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO10G03610.1 vs.
Match: XP_005854419.1 (hypothetical protein NGA_0231800 [Nannochloropsis gaditana CCMP526]; EKU21945.1 hypothetical protein NGA_0231800 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 297.7 bits (761), Expect = 3.700e-77
Identity = 153/271 (56.46%), Postives = 197/271 (72.69%), Query Frame = 0
Query:    1 MRFLGLRLAAVLVVATAMGQASDKNGGPLNRVKRMLQGDTTTTAATAKAFISDHEIQDSWATDPILKSAKRLMNGDHANLVVDMSLGNEVKEIFSDPDTTYAMLQATPLFNVLPGVKALRAKAKEDFTKTDSMAILETYRKFVATAIKGMKDMANPVALAETMQKVANSMQPSTLQADGTHRALTTEERRMTELVARVENGDSAAVDELQDNVADSLWNGAIDLSELKGKVPDIVEQLRQITMDEDPAFFDLITGDDPLVKKVLTDPSMLF 272
            MRF  + L    V A    + S+K GGP+ RVKRM+  D T  AAT+ +   + +IQDSW+ D +L  A+RL+NGDHA ++ DMS+G E++EIF +P+ +Y +LQ  P+F VL GVK L AK KE FTK DS+++LE+YR FV+TAIK MKDMA+PV +A TMQK +++M P T   DG+HRALT EERRMTELV RVE GD  A  +L D +ADSLW   IDLSE KGK P+ ++ LR+I M E+P  FDLITG+DPLV+KVL+DPSMLF
Sbjct:    1 MRFHVIALLIGAVTACHAAE-SEKKGGPMQRVKRMMATDAT--AATSTSAGEEEDIQDSWSFDSVLSGARRLINGDHAGILADMSMGKEMQEIFENPEVSYQLLQVFPMFKVLNGVKELSAKPKELFTKADSLSVLESYRNFVSTAIKNMKDMADPVGMATTMQKYSDAMSPVTQNPDGSHRALTEEERRMTELVRRVEEGDPEATGQLHDRIADSLWGNTIDLSEFKGKEPEALKVLREIVMKEEPKVFDLITGEDPLVRKVLSDPSMLF 268          
The following BLAST results are available for this feature:
BLAST of NO10G03610.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854419.13.700e-7756.46hypothetical protein NGA_0231800 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G03610NO10G03610Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G03610.1NO10G03610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G03610.1.cds1NO10G03610.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G03610.1.cds2NO10G03610.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G03610.1.cds3NO10G03610.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G03610.1.cds4NO10G03610.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G03610.1.cds5NO10G03610.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G03610.1.cds6NO10G03610.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G03610.1 ID=NO10G03610.1|Name=NO10G03610.1|organism=Nannochloropsis oceanica|type=mRNA|length=1146bp
AACGCTTTGACTTGTGTCGCATGCGCCCCGTCACGCGGCTGGCCAACAGT
GCCCTCTGCCATGCTTGGTGTGAGACACGTAGTCACGACAGGCTCGACGG
CGAAAATAGGTAGCAAGGGGAAGAGGAGGCGCAATACAAGGAACTTTACC
TGTGGCCTTTCCCCCTTGCTCACCCTTCCGTCGCTACGGTATGGTGCTCT
ATTGCTCGGGCTACTCATCAGCACTCACAAAGCTCTTCTCCTCCGTTCTC
TACTCTCATCTACATAGACAGCAACACACACGTTGTATTCCTTTCCCCAA
AATATGCGCTTTCTTGGTCTTCGCCTCGCCGCCGTGCTCGTGGTCGCCAC
TGCCATGGGCCAGGCCTCGGACAAGAACGGTGGCCCCTTGAATCGTGTCA
AGCGCATGCTTCAGGGAGACACCACGACCACGGCGGCGACAGCAAAGGCC
TTTATCAGCGACCATGAAATACAAGACTCGTGGGCCACTGATCCCATCCT
CAAGAGCGCCAAACGCCTTATGAATGGCGATCACGCCAACCTAGTCGTTG
ACATGAGCTTGGGCAATGAGGTGAAAGAGATTTTCAGTGATCCGGACACC
ACTTACGCGATGTTGCAAGCCACACCCTTGTTCAATGTGTTACCCGGCGT
GAAGGCCTTGAGAGCCAAGGCCAAAGAGGACTTCACGAAAACAGATAGCA
TGGCCATCCTTGAGACCTATCGCAAGTTTGTGGCGACGGCCATCAAGGGC
ATGAAAGACATGGCGAACCCCGTCGCTCTAGCCGAAACCATGCAGAAGGT
CGCGAACTCAATGCAGCCCAGCACTCTGCAGGCTGATGGCACCCACCGGG
CCTTGACGACGGAGGAACGGCGCATGACTGAGCTTGTCGCCCGCGTCGAG
AATGGCGACTCTGCCGCCGTCGATGAACTTCAAGACAACGTGGCCGACAG
CTTGTGGAATGGAGCTATCGATCTCTCGGAGCTCAAGGGCAAAGTACCGG
ACATCGTCGAGCAGCTCCGCCAAATCACCATGGACGAGGATCCGGCGTTC
TTCGACCTCATCACGGGCGACGACCCTCTTGTGAAAAAGGTGCTCACGGA
TCCCAGCATGCTCTTCGGAGTCGGGGCTTCCATGGGCGACCAGTAA
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protein sequence of NO10G03610.1

>NO10G03610.1-protein ID=NO10G03610.1-protein|Name=NO10G03610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=281bp
MRFLGLRLAAVLVVATAMGQASDKNGGPLNRVKRMLQGDTTTTAATAKAF
ISDHEIQDSWATDPILKSAKRLMNGDHANLVVDMSLGNEVKEIFSDPDTT
YAMLQATPLFNVLPGVKALRAKAKEDFTKTDSMAILETYRKFVATAIKGM
KDMANPVALAETMQKVANSMQPSTLQADGTHRALTTEERRMTELVARVEN
GDSAAVDELQDNVADSLWNGAIDLSELKGKVPDIVEQLRQITMDEDPAFF
DLITGDDPLVKKVLTDPSMLFGVGASMGDQ*
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mRNA from alignment at chr10:1033943..1036045+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G03610.1 ID=NO10G03610.1|Name=NO10G03610.1|organism=Nannochloropsis oceanica|type=mRNA|length=2103bp|location=Sequence derived from alignment at chr10:1033943..1036045+ (Nannochloropsis oceanica)
AACGCTTTGACTTGTGTCGCATGCGCCCCGTCACGCGGCTGGCCAACAGT GCCCTCTGCCATGCTTGGTGTGAGACACGTAGTCACGACAGGCTCGACGG CGAAAATAGGTAGCAAGGGGAAGAGGAGGCGCAATACAAGGAACTTTACC TGTGGCCTTTCCCCCTTGCTCACCCTTCCGTCGCTACGGTATGGTGCTCT ATTGCTCGGGCTACTCATCAGCACTCACAAAGCTCTTCTCCTCCGTTCTC TACTCTCATCTACATAGACAGCAACACACACGTTGTATTCCTTTCCCCAA AATATGCGCTTTCTTGGTCTTCGCCTCGCCGCCGTGCTCGTGGTCGCCAC TGCCATGGGCCAGGCCTCGGACAAGAACGGTGGCCCCTTGAATCGTGTCA AGCGCATGCTTCAGGGAGACACCACGACCACGGCGGCGACAGCAAAGGCC TTTATCAGCGACCATGAAATACAAGACTCGTGGGCCACTGATCCCATCCT CAAGAGCGCCAAACGCCTTATGAATGGCGATCACGCCAACCTAGTCGTTG ACATGAGCTTGGGCAATGAGGTGAAAGAGATTTTCAGTGATCCGGACACC ACTTACGCGATGTTGCAAGGTAAGACAGAGGGAGAGACTGTGCTCATGGA ACAGATGAAAAGGCAACGACCTGTGGCTCGTCACTCAGCATTTTCCCCGT TTCCCTGCGCCCGCCCGCCCTTCCTCCCTCTTCCATCCTCTTCCTGCAGC CACACCCTTGTTCAATGTGTTACCCGGCGTGAAGGCCTTGAGAGCCAAGG CCAAAGAGGACTTCACGAAAACAGATGTACGTATTACAAGAGAAAGCGAA TCTAAGAAAAGTATGCATTCCTTCCCCTCCACAGACCCTCGGCGTCCTTC TCTTCAAAAAGGGAGAGAATCAAGCAGCTCTTGTATCCTTCCCTTGGAGA AGATCAAATGCTCGCTTTTCGCATGTGCTTCCTTTTTTCCTTTGCTTCCA TCCCTGACATCACGTCTTTCTCATTCCATCACACACGCACTTCATCGAAA TTATAGAGCATGGCCATCCTTGAGACCTATCGCAAGTTTGTGGCGACGGC CATCAAGGGCATGAAAGACATGGCGAACCCCGTCGCTCTAGCCGAAACCA TGCAGAAGGTCGCGAACTCAATGCAGCCCAGCACTCTGCAGGCTGATGGC ACCCACCGGGCCTTGACGACGGAGGAACGGCGCATGACTGAGCTTGTCGC CCGCGTCGAGGTATGTTTCTGTCTTTGTGTGGCGATACGTCATCCCTTCA TTGCGTTCCTTATCCCTCGGCTGACATTTCTCATATGAATTTAACGTGCA CCCCACCCACAGAATGGCGACTCTGCCGCCGTCGATGAACTTCAAGACAA CGTGGCCGACAGCTTGTGGAATGGAGGTAAGCACACGATACTTTTCGCAA TATGTGGGTGTGTGAATGGGGCGTTTATCCTCAACTACGTGACCTCTTTC ATTCTGTATAGCTATTCCTGGGGGCTTTCGTATGCGATGAAATGAGTTGT GGGAAGGCTACATGCTTGCGGATGAATGTCCTTTGCTATTCTTTCTCTGA AATGTCTGGTCTCAGTCAACTTTCTACGTGATAGTCCACTCCAACAACCA CTCCCCGCCTCGTCTAGTTTTTCCCCCCATCACACCTTCCTTGCGATAGC CACGGCTTTGTTCTAATCAATATCAAGCGTCATTTCTGCTGGGTGACTAA ATTTCGTCACTCTGGATGACAAAGTTTCTCTCTCAATGATTCACCCTTTT CTTCCCCACTCTCTAACCCCCGCCCAGCTATCGATCTCTCGGAGCTCAAG GGCAAAGTACCGGACATCGTCGAGCAGCTCCGCCAAATCACCATGGACGA GGATCCGGCGTTCTTCGACCTCATCACGGGCGACGACCCTCTTGTGAAAA AGTACGTTCAAAGAGAGAAAAGCAGAGAAGGGGAAGGGAGAAAAAGGCAA GCAGCACAGGCACTTACTTTGTATTTCTACACAACCATTACATAGGGTGC TCACGGATCCCAGCATGCTCTTCGGAGTCGGGGCTTCCATGGGCGACCAG TAA
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Coding sequence (CDS) from alignment at chr10:1033943..1036045+

>NO10G03610.1 ID=NO10G03610.1|Name=NO10G03610.1|organism=Nannochloropsis oceanica|type=CDS|length=843bp|location=Sequence derived from alignment at chr10:1033943..1036045+ (Nannochloropsis oceanica)
ATGCGCTTTCTTGGTCTTCGCCTCGCCGCCGTGCTCGTGGTCGCCACTGC
CATGGGCCAGGCCTCGGACAAGAACGGTGGCCCCTTGAATCGTGTCAAGC
GCATGCTTCAGGGAGACACCACGACCACGGCGGCGACAGCAAAGGCCTTT
ATCAGCGACCATGAAATACAAGACTCGTGGGCCACTGATCCCATCCTCAA
GAGCGCCAAACGCCTTATGAATGGCGATCACGCCAACCTAGTCGTTGACA
TGAGCTTGGGCAATGAGGTGAAAGAGATTTTCAGTGATCCGGACACCACT
TACGCGATGTTGCAAGCCACACCCTTGTTCAATGTGTTACCCGGCGTGAA
GGCCTTGAGAGCCAAGGCCAAAGAGGACTTCACGAAAACAGATAGCATGG
CCATCCTTGAGACCTATCGCAAGTTTGTGGCGACGGCCATCAAGGGCATG
AAAGACATGGCGAACCCCGTCGCTCTAGCCGAAACCATGCAGAAGGTCGC
GAACTCAATGCAGCCCAGCACTCTGCAGGCTGATGGCACCCACCGGGCCT
TGACGACGGAGGAACGGCGCATGACTGAGCTTGTCGCCCGCGTCGAGAAT
GGCGACTCTGCCGCCGTCGATGAACTTCAAGACAACGTGGCCGACAGCTT
GTGGAATGGAGCTATCGATCTCTCGGAGCTCAAGGGCAAAGTACCGGACA
TCGTCGAGCAGCTCCGCCAAATCACCATGGACGAGGATCCGGCGTTCTTC
GACCTCATCACGGGCGACGACCCTCTTGTGAAAAAGGTGCTCACGGATCC
CAGCATGCTCTTCGGAGTCGGGGCTTCCATGGGCGACCAGTAA
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Synonyms
Publications