NO10G03350, NO10G03350 (gene) Nannochloropsis oceanica

Overview
NameNO10G03350
Unique NameNO10G03350
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2749
Alignment locationchr10:944978..947726 +

Link to JBrowse

Properties
Property NameValue
DescriptionFha domain-containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:944978..947726 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0005515protein binding
GO:0046872metal ion binding
Vocabulary: INTERPRO
TermDefinition
IPR008984SMAD_FHA_domain
IPR018957Znf_C3HC4_RING-type
IPR001841Znf_RING
IPR000253FHA_dom
Homology
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BLAST of NO10G03350 vs. NCBI_GenBank
Match: EWM25548.1 (fha domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 231.5 bits (589), Expect = 7.900e-57
Identity = 170/491 (34.62%), Postives = 231/491 (47.05%), Query Frame = 0 
Query:    1 MAPAASVSTD-EGRSRMGNEDQAAQQPAALIEDGVERTLCLVEPKPSNRQPQDKIPTLIKLTRRLISVGRSLKSEVILSQGQPQNTISRKHAEVLVTEDGTTHIQDVGSLNGIFINRVKIRRARLHSGDLVQFGGAAGLQEGAELGHVSNRAIVYRYLERGKGGEGGKAGCQTSSGAGSFKSRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAGAMRAISSNLXXXXXXXXXXXXXXXXXXEIASLREALATARQEEGWVFAALNMAPSLGLRQA----AXXXXXXXXXXXXXXXXXXXXXXXXXXGEGWREALRAKDAELMAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEMEGEIIELRRARTSLQTQLDKLKAVRTTKTMEEGREGR------GKAEVLAELEGELGCALCSELMVDAGVLPCSHAFCFSCIRAHFQQQPQQ 481
            MAPAAS++    G +  G++ +   +  A+++DG+ERTLCLVEPKPS RQPQDKIPTLI ++R   SVGRS+K++V+LS G  QNTISR+HAE+LV+ + +T+IQDVGSLNG+FINRVKIR+ARLHSGD++QFGGAAGLQEGAELG V ++AI+YRY+ER   G+G +   Q ++  G    R                                                            + R+  S                     IA+L++ALA+A+Q +  VF A+  +PS   ++A                                E  R+ALR KDA LM A                                           K  + E ++                          GR  +      G+ E+L  LE ELGCALCSE+++DAGVLPCSHAFCFSC+  + +  P +
Sbjct:   60 MAPAASINLQGHGGNETGHKAEEFAR-GAVVDDGIERTLCLVEPKPSARQPQDKIPTLIHISRTNTSVGRSVKADVVLSHGMTQNTISRRHAEILVSPEKSTYIQDVGSLNGVFINRVKIRKARLHSGDMIQFGGAAGLQEGAELGPVCSKAIMYRYVERDV-GKGKERADQRNAFEGHVGDRARIVARDQERGKHEGEMLEGNGNMRAHNGKKRRRTAQGVHVASKEDRESSQQLHFDQNLESSRSKES-----------------MEARIATLQKALASAQQCQKKVFTAVGFSPSSDYQEAITALLNAVQVGREAEGRVQELETIVGAERAAKEQARQALREKDAALMVA-----EARVDAALAQLQEGKHVAEDQSTVKQRAAEEAVKMLQAKTAQAEALKXXXXXXXXXXXXXXXXXXXXXXXXXXGRSQQAKGDKGGQEEILQVLEAELGCALCSEIVMDAGVLPCSHAFCFSCVHRYLKAGPDK 526
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BLAST of NO10G03350 vs. NCBI_GenBank
Match: CBJ27794.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 79.0 bits (193), Expect = 6.600e-11
Identity = 43/107 (40.19%), Postives = 63/107 (58.88%), Query Frame = 0 
Query:   54 IPTLIKLTRRLISVGRSLKSEVILSQGQPQNTISRKHAEVLVTE----DGTTHIQDVGSLNGIFINRVKIRRARLHSGDLVQFGGAAGLQEGAELGHVSNRAIVYRY 157
            +P +I+L+R    +GRS K+  +     P  TISRKHAE+   +      T  ++D+GS NG+F+N  K++  RL  GD+VQFGGAA +  G   G   +R I YR+
Sbjct:   19 VPEIIQLSRESTVLGRSSKTCDVTLDAAPTKTISRKHAEIFCGKGKRGPKTYTLRDLGSTNGVFVNEFKVQEQRLRHGDVVQFGGAADIPVGTRFGGTGSR-IRYRF 124
The following BLAST results are available for this feature:
BLAST of NO10G03350 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM25548.17.900e-5734.62fha domain-containing protein [Nannochloropsis gad... [more]
CBJ27794.16.600e-1140.19conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR013ngnoR013Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G03350.1NO10G03350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100130g5gene4958Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G03350.1NO10G03350.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G03350 ID=NO10G03350|Name=NO10G03350|organism=Nannochloropsis oceanica|type=gene|length=2749bp
GATGGGAGAGACGGTCTCATTATTTTTTTCGTTACTTTTTCTTGCGTCGG
CCCCCCTATCCGATAACCGGAGGTGAAAGGCGCAGCAGGGAGGGCGGAGA
CGACGGATGTTGAAATAAATATGGAATAAGCGATGCTGAGTGCCGCACTC
GCAAATCATTCTCCCAGTCTCAAAAGAAGCTTTGGAGGTAAGAGCCTTGC
AGCCTTGGAACCGTCGCTGTCTGGACAAAATAGCATCGCTAATGCTTGTT
TGCTTCGTGACACCATATCATCAATCAGTCCACCTTCCTATGCCGCGCCC
CACCAAACACACTAATCACAGGTCATGGCACCGGCAGCAAGCGTCAGTAC
CGATGAAGGCCGTAGTAGAATGGGGAACGAAGACCAAGCAGCGCAGCAGC
CGGCAGCCTTGATCGAGGATGGCGTCGAACGAAgtgagtcccttgttatg
cttcgaccaaaccctccttctactcgtgtgtgattgccctgcttgatcat
cccgtggatctcaacagtttgcgcaagattccaaatcattgtatagccgc
aaatatattgtgccttcccccgctcatccttgtcatggcttttttcccga
taatctcctccctgcttgcctccctaccctccagCACTCTGCCTCGTGGA
ACCTAAGCCCTCCAACCGGCAGCCCCAAGACAAGATCCCAACTCTTATTA
AGCTCACGCGCAGATTGATTAGCGTTGGTCGCTCTCTGAAATCTGAGGTG
ATCCTCTCACAGGGGCAACCGCAAAACACCATCTCGAGGAAGCATGCTGA
GGTCTTGGTCACGGAGGACGGCACGACGCATATCCAAGACGTGGGCTCGC
TCAATGGTATATTCATTAATCGAGTGAAAATTAGACGGGCGAGGCTGCAT
TCGGGCGATTTGGTCCAATTTGGCGGAGCAGCGGGTCTTCAAGAAGGGGC
TGAATTGGGGCATGTCAGTAATAGAGCGATTGTCTACAGGTACTTGGAAC
GAGGTAAAGGGGGGGAGGGAGGTAAGGCGGGCTGTCAGACTAGCAGTGGC
GCGGGGAGTTTTAAGAGCAGAGGTGCGGAAAGAGGAGGGGGAGGAGGAGG
AGGAAAAGGAGAGGAAAGACAAGGGTGCGGCACAGAGAGTAAGCGACGAC
GGGTCTCAAATGGCATTGCTGCTACTGCTGTCACCGCCAGTGGCAGAGGT
AGCAGTAGCATCGGTACCACCACCATCAAGACGATGAAGCAAAAGGCGGG
GGCAATGAGAGCCATTTCTTCCAACCTACGGGAAGAGCAGCAGCAACAGC
TGCAGCTGGAGCAGATCGAACAACAGCAAGCGGAAATCGCCTCTTTGCGC
GAGGCCCTCGCCACAGCCCGACAGGAGGAAGGGTGGGTCTTTGCGGCCCT
CAACATGGCTCCCTCCCTCGGTCTTCGGCAAGCAGCAGCAGCAGTGGCAG
CAGCTGTGGCAACAGAAAAAAAGGCTCGAGAGGTGGAGGAGGAAGTGAAG
GAGGAACGGAAGAGGGGGGAAGGATGGAGAGAGGCCTTGCGAGCAAAGGA
TGCAGAGCTCATGGCAGCAGAAGCAAGAGCAGATGCTGCTGTTGCAGAAT
CGCGGATTAAAAATGAGGAGCTGAAGAATCAGGCTGTGGCAGCGGCGGCG
GCAGCGACCGCAGTCGTAGAGAAGGAGAAGGCGGGAGAGGAACGTAGGAA
GGAGATGGAGGGCGAGATAATCGAGTTGAGGAGAGCAAGGACTAGTTTGC
AGACGCAATTGGACAAGCTCAAGGCGGTTAGGACGACAAAGACGATGGAG
GAAGGAAGGGAGGGGAGGGGAAAGGCGGAGGTGTTAGCGGAATTGGAGGG
AGAGCTGGGGTGTGCGTTGTGCTCGGAGCTGATGGTGGACGCGGGGGTCT
TGCCCTGCTCCCATGCCTTCTGCTTCTCGTGTATACGTGCCCATTTTCAG
CAGCAGCCGCAGCAGCATCGGTGTTGTCCTGTATGTCGGGAGATTGTCCC
AGCCAGCTTGCCTCCTTACCGATCGTCGAATATGGACGTAGTTGTGGCCA
TGGTGGTGGAGGGCTGGAAGGAGGGAGGGGTGAAGAGGGAGGAGTGGGTG
AAGAGGGACAGGCAGACGAAGAAGAGGTATGAAAGGTGGGGAGGGGAGAA
GGTAGTGTGTTACCCTCATGCGCCGAGGCTGACAGTGGAGGAGGAGGAGG
AGGAACGGAGGGAGGCGTCGGAGAGGAAAGAGCAGGCGAAGCGGGAGAGG
GAGGGAGGTTTGAGTGGGAAGATGCGGTGGGCAAACGAGAAAGGGGAGAA
GGGAAACAGCGTTAAAGGAAGCGGAGGTGTTGAGGCTTTTTCTGGAGTGC
ATATCCCGACGAACGGAGCGGGGAAGGAGGGAAGGGAGGATGAGGAGGAG
GAGGAGGAGGAAGAAGAGGAGGTGTGGTGTGAGGGCTGCAATGAGAAGGG
TCATGATATAGGGGAATGTCCGCATGTAGAGGTGGAGCAGGAGGATGAAG
AGGAGGAAGAGGAACAAGACGAAGAGGAAGTTGTGGAGGATCAGGGGGAA
GACGATGATTCTGAACGAGGGAGTGGATGGTGAAGCAAACTAATATGTGG
TGTGAGCGAGCGTGTATACTATACCCGGATTTGGGCGTCGTTTGGATGCT
TTTGCTCCGCCCGATGGATCACTGTAAAGAATCAATAAATAGAATGGCAG
ACAGCGCATAGAGTAGCGTATGCTTTTAAGTGAGTGTCTGCGGGTGGTG
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protein sequence of NO10G03350.1

>NO10G03350.1-protein ID=NO10G03350.1-protein|Name=NO10G03350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=686bp
MAPAASVSTDEGRSRMGNEDQAAQQPAALIEDGVERTLCLVEPKPSNRQP
QDKIPTLIKLTRRLISVGRSLKSEVILSQGQPQNTISRKHAEVLVTEDGT
THIQDVGSLNGIFINRVKIRRARLHSGDLVQFGGAAGLQEGAELGHVSNR
AIVYRYLERGKGGEGGKAGCQTSSGAGSFKSRGAERGGGGGGGKGEERQG
CGTESKRRRVSNGIAATAVTASGRGSSSIGTTTIKTMKQKAGAMRAISSN
LREEQQQQLQLEQIEQQQAEIASLREALATARQEEGWVFAALNMAPSLGL
RQAAAAVAAAVATEKKAREVEEEVKEERKRGEGWREALRAKDAELMAAEA
RADAAVAESRIKNEELKNQAVAAAAAATAVVEKEKAGEERRKEMEGEIIE
LRRARTSLQTQLDKLKAVRTTKTMEEGREGRGKAEVLAELEGELGCALCS
ELMVDAGVLPCSHAFCFSCIRAHFQQQPQQHRCCPVCREIVPASLPPYRS
SNMDVVVAMVVEGWKEGGVKREEWVKRDRQTKKRYERWGGEKVVCYPHAP
RLTVEEEEEERREASERKEQAKREREGGLSGKMRWANEKGEKGNSVKGSG
GVEAFSGVHIPTNGAGKEGREDEEEEEEEEEEVWCEGCNEKGHDIGECPH
VEVEQEDEEEEEEQDEEEVVEDQGEDDDSERGSGW*
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Synonyms
Publications