NO10G03350.1, NO10G03350.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G03350.1
Unique NameNO10G03350.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2548
Alignment locationchr10:944978..947726 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:944978..947726 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G03350.1 vs.
Match: EWM25548.1 (fha domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 304.3 bits (778), Expect = 9.600e-79
Identity = 218/500 (43.60%), Postives = 306/500 (61.20%), Query Frame = 0 
Query:    1 MAPAASVSTD-EGRSRMGNEDQAAQQPAALIEDGVERTLCLVEPKPSNRQPQDKIPTLIKLTRRLISVGRSLKSEVILSQGQPQNTISRKHAEVLVTEDGTTHIQDVGSLNGIFINRVKIRRARLHSGDLVQFGGAAGLQEGAELGHVSNRAIVYRYLER--GKGGEGGKAGCQTSSGAGSFKSRGAERGGGGGGGKGEERQGCG-----TESKRRRVSNGIAATAVTASGRGSSSIGTTTIKTMKQKAGAMRAISSNLREEQQQQLQLEQ-------IEQQQAEIASLREALATARQEEGWVFAALNMAPSLGLRQAAAAVAAAV----ATEKKAREVEEEVKEERKRGEGWREALRAKDAELMAAEARADAAVAESRIKNEELKNQAVAAAAAATAVVEKEKAGEERRKEMEGEIIELRRARTSLQTQLDKLKAVRTTKTMEEGREGR-GKAEVLAELEGELGCALCSELMVDAGVLPCSHAFCFSCIRAHFQQQPQQ 481
            MAPAAS++    G +  G++ +   +  A+++DG+ERTLCLVEPKPS RQPQDKIPTLI ++R   SVGRS+K++V+LS G  QNTISR+HAE+LV+ + +T+IQDVGSLNG+FINRVKIR+ARLHSGD++QFGGAAGLQEGAELG V ++AI+YRY+ER  GKG E            G  ++R   R    G  +GE  +G G        KRRR + G+                                ++S    E  QQL  +Q        E  +A IA+L++ALA+A+Q +  VF A+  +PS   ++A  A+  AV      E + +E+E  V  ER   E  R+ALR KDA LM AEAR DAA+A+ +      ++Q+     AA   V+  +A   + + ++ E+   RR++T+LQ QLDK +AV+T+   ++ +  + G+ E+L  LE ELGCALCSE+++DAGVLPCSHAFCFSC+  + +  P +
Sbjct:   60 MAPAASINLQGHGGNETGHKAEEFAR-GAVVDDGIERTLCLVEPKPSARQPQDKIPTLIHISRTNTSVGRSVKADVVLSHGMTQNTISRRHAEILVSPEKSTYIQDVGSLNGVFINRVKIRKARLHSGDMIQFGGAAGLQEGAELGPVCSKAIMYRYVERDVGKGKERADQRNAFEGHVGD-RARIVARDQERGKHEGEMLEGNGNMRAHNGKKRRRTAQGV-------------------------------HVASKEDRESSQQLHFDQNLESSRSKESMEARIATLQKALASAQQCQKKVFTAVGFSPSSDYQEAITALLNAVQVGREAEGRVQELETIVGAERAAKEQARQALREKDAALMVAEARVDAALAQLQEGKHVAEDQSTVKQRAAEEAVKMLQAKTAQAEALKRELKNTRRSKTALQRQLDKCRAVKTSGRSQQAKGDKGGQEEILQVLEAELGCALCSEIVMDAGVLPCSHAFCFSCVHRYLKAGPDK 526
The following BLAST results are available for this feature:
BLAST of NO10G03350.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25548.19.600e-7943.60fha domain-containing protein [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G03350NO10G03350Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G03350.1NO10G03350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G03350.1.cds1NO10G03350.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G03350.1.cds2NO10G03350.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G03350.1 ID=NO10G03350.1|Name=NO10G03350.1|organism=Nannochloropsis oceanica|type=mRNA|length=2548bp
GATGGGAGAGACGGTCTCATTATTTTTTTCGTTACTTTTTCTTGCGTCGG
CCCCCCTATCCGATAACCGGAGGTGAAAGGCGCAGCAGGGAGGGCGGAGA
CGACGGATGTTGAAATAAATATGGAATAAGCGATGCTGAGTGCCGCACTC
GCAAATCATTCTCCCAGTCTCAAAAGAAGCTTTGGAGGTAAGAGCCTTGC
AGCCTTGGAACCGTCGCTGTCTGGACAAAATAGCATCGCTAATGCTTGTT
TGCTTCGTGACACCATATCATCAATCAGTCCACCTTCCTATGCCGCGCCC
CACCAAACACACTAATCACAGGTCATGGCACCGGCAGCAAGCGTCAGTAC
CGATGAAGGCCGTAGTAGAATGGGGAACGAAGACCAAGCAGCGCAGCAGC
CGGCAGCCTTGATCGAGGATGGCGTCGAACGAACACTCTGCCTCGTGGAA
CCTAAGCCCTCCAACCGGCAGCCCCAAGACAAGATCCCAACTCTTATTAA
GCTCACGCGCAGATTGATTAGCGTTGGTCGCTCTCTGAAATCTGAGGTGA
TCCTCTCACAGGGGCAACCGCAAAACACCATCTCGAGGAAGCATGCTGAG
GTCTTGGTCACGGAGGACGGCACGACGCATATCCAAGACGTGGGCTCGCT
CAATGGTATATTCATTAATCGAGTGAAAATTAGACGGGCGAGGCTGCATT
CGGGCGATTTGGTCCAATTTGGCGGAGCAGCGGGTCTTCAAGAAGGGGCT
GAATTGGGGCATGTCAGTAATAGAGCGATTGTCTACAGGTACTTGGAACG
AGGTAAAGGGGGGGAGGGAGGTAAGGCGGGCTGTCAGACTAGCAGTGGCG
CGGGGAGTTTTAAGAGCAGAGGTGCGGAAAGAGGAGGGGGAGGAGGAGGA
GGAAAAGGAGAGGAAAGACAAGGGTGCGGCACAGAGAGTAAGCGACGACG
GGTCTCAAATGGCATTGCTGCTACTGCTGTCACCGCCAGTGGCAGAGGTA
GCAGTAGCATCGGTACCACCACCATCAAGACGATGAAGCAAAAGGCGGGG
GCAATGAGAGCCATTTCTTCCAACCTACGGGAAGAGCAGCAGCAACAGCT
GCAGCTGGAGCAGATCGAACAACAGCAAGCGGAAATCGCCTCTTTGCGCG
AGGCCCTCGCCACAGCCCGACAGGAGGAAGGGTGGGTCTTTGCGGCCCTC
AACATGGCTCCCTCCCTCGGTCTTCGGCAAGCAGCAGCAGCAGTGGCAGC
AGCTGTGGCAACAGAAAAAAAGGCTCGAGAGGTGGAGGAGGAAGTGAAGG
AGGAACGGAAGAGGGGGGAAGGATGGAGAGAGGCCTTGCGAGCAAAGGAT
GCAGAGCTCATGGCAGCAGAAGCAAGAGCAGATGCTGCTGTTGCAGAATC
GCGGATTAAAAATGAGGAGCTGAAGAATCAGGCTGTGGCAGCGGCGGCGG
CAGCGACCGCAGTCGTAGAGAAGGAGAAGGCGGGAGAGGAACGTAGGAAG
GAGATGGAGGGCGAGATAATCGAGTTGAGGAGAGCAAGGACTAGTTTGCA
GACGCAATTGGACAAGCTCAAGGCGGTTAGGACGACAAAGACGATGGAGG
AAGGAAGGGAGGGGAGGGGAAAGGCGGAGGTGTTAGCGGAATTGGAGGGA
GAGCTGGGGTGTGCGTTGTGCTCGGAGCTGATGGTGGACGCGGGGGTCTT
GCCCTGCTCCCATGCCTTCTGCTTCTCGTGTATACGTGCCCATTTTCAGC
AGCAGCCGCAGCAGCATCGGTGTTGTCCTGTATGTCGGGAGATTGTCCCA
GCCAGCTTGCCTCCTTACCGATCGTCGAATATGGACGTAGTTGTGGCCAT
GGTGGTGGAGGGCTGGAAGGAGGGAGGGGTGAAGAGGGAGGAGTGGGTGA
AGAGGGACAGGCAGACGAAGAAGAGGTATGAAAGGTGGGGAGGGGAGAAG
GTAGTGTGTTACCCTCATGCGCCGAGGCTGACAGTGGAGGAGGAGGAGGA
GGAACGGAGGGAGGCGTCGGAGAGGAAAGAGCAGGCGAAGCGGGAGAGGG
AGGGAGGTTTGAGTGGGAAGATGCGGTGGGCAAACGAGAAAGGGGAGAAG
GGAAACAGCGTTAAAGGAAGCGGAGGTGTTGAGGCTTTTTCTGGAGTGCA
TATCCCGACGAACGGAGCGGGGAAGGAGGGAAGGGAGGATGAGGAGGAGG
AGGAGGAGGAAGAAGAGGAGGTGTGGTGTGAGGGCTGCAATGAGAAGGGT
CATGATATAGGGGAATGTCCGCATGTAGAGGTGGAGCAGGAGGATGAAGA
GGAGGAAGAGGAACAAGACGAAGAGGAAGTTGTGGAGGATCAGGGGGAAG
ACGATGATTCTGAACGAGGGAGTGGATGGTGAAGCAAACTAATATGTGGT
GTGAGCGAGCGTGTATACTATACCCGGATTTGGGCGTCGTTTGGATGCTT
TTGCTCCGCCCGATGGATCACTGTAAAGAATCAATAAATAGAATGGCAGA
CAGCGCATAGAGTAGCGTATGCTTTTAAGTGAGTGTCTGCGGGTGGTG
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protein sequence of NO10G03350.1

>NO10G03350.1-protein ID=NO10G03350.1-protein|Name=NO10G03350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=686bp
MAPAASVSTDEGRSRMGNEDQAAQQPAALIEDGVERTLCLVEPKPSNRQP
QDKIPTLIKLTRRLISVGRSLKSEVILSQGQPQNTISRKHAEVLVTEDGT
THIQDVGSLNGIFINRVKIRRARLHSGDLVQFGGAAGLQEGAELGHVSNR
AIVYRYLERGKGGEGGKAGCQTSSGAGSFKSRGAERGGGGGGGKGEERQG
CGTESKRRRVSNGIAATAVTASGRGSSSIGTTTIKTMKQKAGAMRAISSN
LREEQQQQLQLEQIEQQQAEIASLREALATARQEEGWVFAALNMAPSLGL
RQAAAAVAAAVATEKKAREVEEEVKEERKRGEGWREALRAKDAELMAAEA
RADAAVAESRIKNEELKNQAVAAAAAATAVVEKEKAGEERRKEMEGEIIE
LRRARTSLQTQLDKLKAVRTTKTMEEGREGRGKAEVLAELEGELGCALCS
ELMVDAGVLPCSHAFCFSCIRAHFQQQPQQHRCCPVCREIVPASLPPYRS
SNMDVVVAMVVEGWKEGGVKREEWVKRDRQTKKRYERWGGEKVVCYPHAP
RLTVEEEEEERREASERKEQAKREREGGLSGKMRWANEKGEKGNSVKGSG
GVEAFSGVHIPTNGAGKEGREDEEEEEEEEEEVWCEGCNEKGHDIGECPH
VEVEQEDEEEEEEQDEEEVVEDQGEDDDSERGSGW*
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mRNA from alignment at chr10:944978..947726+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G03350.1 ID=NO10G03350.1|Name=NO10G03350.1|organism=Nannochloropsis oceanica|type=mRNA|length=2749bp|location=Sequence derived from alignment at chr10:944978..947726+ (Nannochloropsis oceanica)
GATGGGAGAGACGGTCTCATTATTTTTTTCGTTACTTTTTCTTGCGTCGG
CCCCCCTATCCGATAACCGGAGGTGAAAGGCGCAGCAGGGAGGGCGGAGA
CGACGGATGTTGAAATAAATATGGAATAAGCGATGCTGAGTGCCGCACTC
GCAAATCATTCTCCCAGTCTCAAAAGAAGCTTTGGAGGTAAGAGCCTTGC
AGCCTTGGAACCGTCGCTGTCTGGACAAAATAGCATCGCTAATGCTTGTT
TGCTTCGTGACACCATATCATCAATCAGTCCACCTTCCTATGCCGCGCCC
CACCAAACACACTAATCACAGGTCATGGCACCGGCAGCAAGCGTCAGTAC
CGATGAAGGCCGTAGTAGAATGGGGAACGAAGACCAAGCAGCGCAGCAGC
CGGCAGCCTTGATCGAGGATGGCGTCGAACGAAGTGAGTCCCTTGTTATG
CTTCGACCAAACCCTCCTTCTACTCGTGTGTGATTGCCCTGCTTGATCAT
CCCGTGGATCTCAACAGTTTGCGCAAGATTCCAAATCATTGTATAGCCGC
AAATATATTGTGCCTTCCCCCGCTCATCCTTGTCATGGCTTTTTTCCCGA
TAATCTCCTCCCTGCTTGCCTCCCTACCCTCCAGCACTCTGCCTCGTGGA
ACCTAAGCCCTCCAACCGGCAGCCCCAAGACAAGATCCCAACTCTTATTA
AGCTCACGCGCAGATTGATTAGCGTTGGTCGCTCTCTGAAATCTGAGGTG
ATCCTCTCACAGGGGCAACCGCAAAACACCATCTCGAGGAAGCATGCTGA
GGTCTTGGTCACGGAGGACGGCACGACGCATATCCAAGACGTGGGCTCGC
TCAATGGTATATTCATTAATCGAGTGAAAATTAGACGGGCGAGGCTGCAT
TCGGGCGATTTGGTCCAATTTGGCGGAGCAGCGGGTCTTCAAGAAGGGGC
TGAATTGGGGCATGTCAGTAATAGAGCGATTGTCTACAGGTACTTGGAAC
GAGGTAAAGGGGGGGAGGGAGGTAAGGCGGGCTGTCAGACTAGCAGTGGC
GCGGGGAGTTTTAAGAGCAGAGGTGCGGAAAGAGGAGGGGGAGGAGGAGG
AGGAAAAGGAGAGGAAAGACAAGGGTGCGGCACAGAGAGTAAGCGACGAC
GGGTCTCAAATGGCATTGCTGCTACTGCTGTCACCGCCAGTGGCAGAGGT
AGCAGTAGCATCGGTACCACCACCATCAAGACGATGAAGCAAAAGGCGGG
GGCAATGAGAGCCATTTCTTCCAACCTACGGGAAGAGCAGCAGCAACAGC
TGCAGCTGGAGCAGATCGAACAACAGCAAGCGGAAATCGCCTCTTTGCGC
GAGGCCCTCGCCACAGCCCGACAGGAGGAAGGGTGGGTCTTTGCGGCCCT
CAACATGGCTCCCTCCCTCGGTCTTCGGCAAGCAGCAGCAGCAGTGGCAG
CAGCTGTGGCAACAGAAAAAAAGGCTCGAGAGGTGGAGGAGGAAGTGAAG
GAGGAACGGAAGAGGGGGGAAGGATGGAGAGAGGCCTTGCGAGCAAAGGA
TGCAGAGCTCATGGCAGCAGAAGCAAGAGCAGATGCTGCTGTTGCAGAAT
CGCGGATTAAAAATGAGGAGCTGAAGAATCAGGCTGTGGCAGCGGCGGCG
GCAGCGACCGCAGTCGTAGAGAAGGAGAAGGCGGGAGAGGAACGTAGGAA
GGAGATGGAGGGCGAGATAATCGAGTTGAGGAGAGCAAGGACTAGTTTGC
AGACGCAATTGGACAAGCTCAAGGCGGTTAGGACGACAAAGACGATGGAG
GAAGGAAGGGAGGGGAGGGGAAAGGCGGAGGTGTTAGCGGAATTGGAGGG
AGAGCTGGGGTGTGCGTTGTGCTCGGAGCTGATGGTGGACGCGGGGGTCT
TGCCCTGCTCCCATGCCTTCTGCTTCTCGTGTATACGTGCCCATTTTCAG
CAGCAGCCGCAGCAGCATCGGTGTTGTCCTGTATGTCGGGAGATTGTCCC
AGCCAGCTTGCCTCCTTACCGATCGTCGAATATGGACGTAGTTGTGGCCA
TGGTGGTGGAGGGCTGGAAGGAGGGAGGGGTGAAGAGGGAGGAGTGGGTG
AAGAGGGACAGGCAGACGAAGAAGAGGTATGAAAGGTGGGGAGGGGAGAA
GGTAGTGTGTTACCCTCATGCGCCGAGGCTGACAGTGGAGGAGGAGGAGG
AGGAACGGAGGGAGGCGTCGGAGAGGAAAGAGCAGGCGAAGCGGGAGAGG
GAGGGAGGTTTGAGTGGGAAGATGCGGTGGGCAAACGAGAAAGGGGAGAA
GGGAAACAGCGTTAAAGGAAGCGGAGGTGTTGAGGCTTTTTCTGGAGTGC
ATATCCCGACGAACGGAGCGGGGAAGGAGGGAAGGGAGGATGAGGAGGAG
GAGGAGGAGGAAGAAGAGGAGGTGTGGTGTGAGGGCTGCAATGAGAAGGG
TCATGATATAGGGGAATGTCCGCATGTAGAGGTGGAGCAGGAGGATGAAG
AGGAGGAAGAGGAACAAGACGAAGAGGAAGTTGTGGAGGATCAGGGGGAA
GACGATGATTCTGAACGAGGGAGTGGATGGTGAAGCAAACTAATATGTGG
TGTGAGCGAGCGTGTATACTATACCCGGATTTGGGCGTCGTTTGGATGCT
TTTGCTCCGCCCGATGGATCACTGTAAAGAATCAATAAATAGAATGGCAG
ACAGCGCATAGAGTAGCGTATGCTTTTAAGTGAGTGTCTGCGGGTGGTG
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Coding sequence (CDS) from alignment at chr10:944978..947726+

>NO10G03350.1 ID=NO10G03350.1|Name=NO10G03350.1|organism=Nannochloropsis oceanica|type=CDS|length=2058bp|location=Sequence derived from alignment at chr10:944978..947726+ (Nannochloropsis oceanica)
ATGGCACCGGCAGCAAGCGTCAGTACCGATGAAGGCCGTAGTAGAATGGG
GAACGAAGACCAAGCAGCGCAGCAGCCGGCAGCCTTGATCGAGGATGGCG
TCGAACGAACACTCTGCCTCGTGGAACCTAAGCCCTCCAACCGGCAGCCC
CAAGACAAGATCCCAACTCTTATTAAGCTCACGCGCAGATTGATTAGCGT
TGGTCGCTCTCTGAAATCTGAGGTGATCCTCTCACAGGGGCAACCGCAAA
ACACCATCTCGAGGAAGCATGCTGAGGTCTTGGTCACGGAGGACGGCACG
ACGCATATCCAAGACGTGGGCTCGCTCAATGGTATATTCATTAATCGAGT
GAAAATTAGACGGGCGAGGCTGCATTCGGGCGATTTGGTCCAATTTGGCG
GAGCAGCGGGTCTTCAAGAAGGGGCTGAATTGGGGCATGTCAGTAATAGA
GCGATTGTCTACAGGTACTTGGAACGAGGTAAAGGGGGGGAGGGAGGTAA
GGCGGGCTGTCAGACTAGCAGTGGCGCGGGGAGTTTTAAGAGCAGAGGTG
CGGAAAGAGGAGGGGGAGGAGGAGGAGGAAAAGGAGAGGAAAGACAAGGG
TGCGGCACAGAGAGTAAGCGACGACGGGTCTCAAATGGCATTGCTGCTAC
TGCTGTCACCGCCAGTGGCAGAGGTAGCAGTAGCATCGGTACCACCACCA
TCAAGACGATGAAGCAAAAGGCGGGGGCAATGAGAGCCATTTCTTCCAAC
CTACGGGAAGAGCAGCAGCAACAGCTGCAGCTGGAGCAGATCGAACAACA
GCAAGCGGAAATCGCCTCTTTGCGCGAGGCCCTCGCCACAGCCCGACAGG
AGGAAGGGTGGGTCTTTGCGGCCCTCAACATGGCTCCCTCCCTCGGTCTT
CGGCAAGCAGCAGCAGCAGTGGCAGCAGCTGTGGCAACAGAAAAAAAGGC
TCGAGAGGTGGAGGAGGAAGTGAAGGAGGAACGGAAGAGGGGGGAAGGAT
GGAGAGAGGCCTTGCGAGCAAAGGATGCAGAGCTCATGGCAGCAGAAGCA
AGAGCAGATGCTGCTGTTGCAGAATCGCGGATTAAAAATGAGGAGCTGAA
GAATCAGGCTGTGGCAGCGGCGGCGGCAGCGACCGCAGTCGTAGAGAAGG
AGAAGGCGGGAGAGGAACGTAGGAAGGAGATGGAGGGCGAGATAATCGAG
TTGAGGAGAGCAAGGACTAGTTTGCAGACGCAATTGGACAAGCTCAAGGC
GGTTAGGACGACAAAGACGATGGAGGAAGGAAGGGAGGGGAGGGGAAAGG
CGGAGGTGTTAGCGGAATTGGAGGGAGAGCTGGGGTGTGCGTTGTGCTCG
GAGCTGATGGTGGACGCGGGGGTCTTGCCCTGCTCCCATGCCTTCTGCTT
CTCGTGTATACGTGCCCATTTTCAGCAGCAGCCGCAGCAGCATCGGTGTT
GTCCTGTATGTCGGGAGATTGTCCCAGCCAGCTTGCCTCCTTACCGATCG
TCGAATATGGACGTAGTTGTGGCCATGGTGGTGGAGGGCTGGAAGGAGGG
AGGGGTGAAGAGGGAGGAGTGGGTGAAGAGGGACAGGCAGACGAAGAAGA
GGTATGAAAGGTGGGGAGGGGAGAAGGTAGTGTGTTACCCTCATGCGCCG
AGGCTGACAGTGGAGGAGGAGGAGGAGGAACGGAGGGAGGCGTCGGAGAG
GAAAGAGCAGGCGAAGCGGGAGAGGGAGGGAGGTTTGAGTGGGAAGATGC
GGTGGGCAAACGAGAAAGGGGAGAAGGGAAACAGCGTTAAAGGAAGCGGA
GGTGTTGAGGCTTTTTCTGGAGTGCATATCCCGACGAACGGAGCGGGGAA
GGAGGGAAGGGAGGATGAGGAGGAGGAGGAGGAGGAAGAAGAGGAGGTGT
GGTGTGAGGGCTGCAATGAGAAGGGTCATGATATAGGGGAATGTCCGCAT
GTAGAGGTGGAGCAGGAGGATGAAGAGGAGGAAGAGGAACAAGACGAAGA
GGAAGTTGTGGAGGATCAGGGGGAAGACGATGATTCTGAACGAGGGAGTG
GATGGTGA
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Synonyms
Publications