NO10G03320, NO10G03320 (gene) Nannochloropsis oceanica

Overview
NameNO10G03320
Unique NameNO10G03320
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length837
Alignment locationchr10:930344..931180 +

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Properties
Property NameValue
DescriptionE3 ubiquitin-protein ligase ring1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:930344..931180 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0016874ligase activity
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR011016Znf_RING-CH
Homology
BLAST of NO10G03320 vs. NCBI_GenBank
Match: EWM25547.1 (e3 ubiquitin-protein ligase ring1 [Nannochloropsis gaditana])

HSP 1 Score: 139.8 bits (351), Expect = 1.300e-29
Identity = 73/116 (62.93%), Postives = 82/116 (70.69%), Query Frame = 0
Query:  172 MSGLIAQLMRGETQRYEAPHASEEAIAALETVVW---------GGGEEGQERECVVCQEGFGDGRVLKRMPCGHVFHGECLETWLRRHANNCPVCRREIKSRERGGGGAGGEESAR 279
            M+ L+AQLMR E  +  A  ASE AIA+LETVVW         GGG E  ERECVVCQE  GDG+VLKRMPCGHVFHGEC+ETWLRRHANNCP+CRR ++  E G  G  GE   R
Sbjct:    1 MNALLAQLMRREAHQTHASPASERAIASLETVVWEEVREGTDRGGGAE--ERECVVCQEELGDGKVLKRMPCGHVFHGECVETWLRRHANNCPICRRALE--EEGEPGREGEGGGR 112          
BLAST of NO10G03320 vs. NCBI_GenBank
Match: XP_019441686.1 (PREDICTED: E3 ubiquitin-protein ligase RING1 [Lupinus angustifolius] >OIW12755.1 hypothetical protein TanjilG_24688 [Lupinus angustifolius])

HSP 1 Score: 89.7 bits (221), Expect = 1.500e-14
Identity = 54/123 (43.90%), Postives = 71/123 (57.72%), Query Frame = 0
Query:  164 MGDYAVG-DMSGLIAQLMRGETQRYEAPHASEEAIAALETVVWGGGEEGQE-RECVVCQEGFGDGRVLKRMPCGHVFHGECLETWLRRHANNCPVCRREI-------KSRERGG-GGAGGEES 277
            +GDY +G  +  LI QL   +  RY  P AS+ AI  L TV+        E  +C VCQ+ F  G  +K+MPC HV+HG+CL  WL+ H N+CPVCR E+       ++R RG  G AGG ES
Sbjct:  148 IGDYFLGPGLEQLIQQLAENDPNRYGTPPASKSAIDNLPTVIVDDELLNSELNQCAVCQDEFEKGSQVKQMPCKHVYHGDCLIPWLQLH-NSCPVCRHELPTDDSDYENRPRGAQGNAGGNES 269          
BLAST of NO10G03320 vs. NCBI_GenBank
Match: CCA20603.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 87.4 bits (215), Expect = 7.500e-14
Identity = 40/97 (41.24%), Postives = 60/97 (61.86%), Query Frame = 0
Query:  165 GDYAVGDMSGLIAQLMRGETQRYEAPHASEEAIAALETVVWGGGEEGQERECVVCQEGFGDGRVLKRMPCGHVFHGECLETWLRRHANNCPVCRREI 262
            GDY VG++S +I QLM+ ++ R+  P A++EAI  L  +     +     EC VC++ F      +RMPC H FH +C+  WL++H N+CPVCR E+
Sbjct:  198 GDYVVGNLSTVINQLMQNDSNRHGTPPAAKEAIEKLPVLSITQEDINTNSECAVCKDDFNLAEEARRMPCTHTFHPDCILPWLKQH-NSCPVCRYEL 293          
BLAST of NO10G03320 vs. NCBI_GenBank
Match: XP_022572242.1 (E3 ubiquitin-protein ligase RING1-like [Brassica napus])

HSP 1 Score: 87.0 bits (214), Expect = 9.800e-14
Identity = 54/119 (45.38%), Postives = 66/119 (55.46%), Query Frame = 0
Query:  164 MGDYAVG-DMSGLIAQLMRGETQRYEAPHASEEAIAALETV-VWGGGEEGQERECVVCQEGFGDGRVLKRMPCGHVFHGECLETWLRRHANNCPVCRREIKS----RERGGGGAGGEES 277
            MGDY  G  +  LI QL   +  RY  P AS+ AI AL TV V       +  +C VC + F DG  +K+MPC HVFH +CL  WL  H N+CPVCR E+ +     E  G G GGE S
Sbjct:  150 MGDYFFGPGLEQLIQQLAENDPNRYGTPPASKSAIDALPTVKVTLDMLNSEMNQCAVCMDEFEDGGDVKQMPCKHVFHQDCLMPWLELH-NSCPVCRYELPTDDPEYESRGQGQGGEAS 267          
BLAST of NO10G03320 vs. NCBI_GenBank
Match: XP_019187789.1 (PREDICTED: E3 ubiquitin-protein ligase RING1 [Ipomoea nil])

HSP 1 Score: 86.7 bits (213), Expect = 1.300e-13
Identity = 49/121 (40.50%), Postives = 67/121 (55.37%), Query Frame = 0
Query:  164 MGDYAVG-DMSGLIAQLMRGETQRYEAPHASEEAIAALETVVWGGGEEGQE-RECVVCQEGFGDGRVLKRMPCGHVFHGECLETWLRRHANNCPVCRREI---------KSRERGGGGAGG 274
            +GDY +G     LI QL   +  RY  P AS+ A+AAL T+         E  +C VC++ F  G  +K+MPC HV+H +C+  WL  H N+CPVCR E+         ++RE GGG A G
Sbjct:  162 IGDYFIGAGFEDLIQQLAENDPNRYGTPPASKSAVAALPTIKANKDLLSSELAQCAVCKDDFELGMEVKQMPCKHVYHNDCILPWLELH-NSCPVCRYELPTDDPDYESRARENGGGSAAG 281          
BLAST of NO10G03320 vs. NCBI_GenBank
Match: XP_012570237.1 (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cicer arietinum] >XP_012570238.1 PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cicer arietinum] >XP_012570239.1 PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cicer arietinum])

HSP 1 Score: 86.3 bits (212), Expect = 1.700e-13
Identity = 50/118 (42.37%), Postives = 67/118 (56.78%), Query Frame = 0
Query:  164 MGDYAVG-DMSGLIAQLMRGETQRYEAPHASEEAIAALETVVWGGGEEGQE-RECVVCQEGFGDGRVLKRMPCGHVFHGECLETWLRRHANNCPVCRREI-------KSRERGGGGAG 273
            +GDY +G  +  LI QL   +  RY  P AS++A+  L TV         E  +C VCQ+ F  G  +K+MPC HV+H ECL  WL+ H N+CPVCR E+       ++R RG GG G
Sbjct:  139 IGDYFLGPGLEQLIQQLAENDPNRYGTPPASKDAVQKLPTVTVDDELLNSELNQCAVCQDEFEKGSQVKQMPCKHVYHDECLLPWLQLH-NSCPVCRYELPTDDADYENRARGDGGDG 255          
BLAST of NO10G03320 vs. NCBI_GenBank
Match: XP_018464716.1 (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Raphanus sativus])

HSP 1 Score: 86.3 bits (212), Expect = 1.700e-13
Identity = 53/127 (41.73%), Postives = 71/127 (55.91%), Query Frame = 0
Query:  165 GDYAVG-DMSGLIAQLMRGETQRYEAPHASEEAIAALETVVWGGG----EEGQERECVVCQEGFGDGRVLKRMPCGHVFHGECLETWLRRHANNCPVCRREI-------KSRERGGGGAG-GEESAR 279
            GDY +G  +  LI QL   +  RY  P AS+ A+  L TV         ++    +C VC + F DG  +K MPC HVFH +CL  WLR H N+CPVCR E+       +SR RGGG +G G+++ R
Sbjct:   67 GDYFLGPGLEQLIQQLAENDPNRYGTPPASKSAVDGLPTVKVSKDRLLKDDEMMNQCAVCMDEFEDGCDVKEMPCKHVFHQDCLMPWLRLH-NSCPVCRFELPTDDPDYESRGRGGGTSGDGQQTPR 192          
BLAST of NO10G03320 vs. NCBI_GenBank
Match: CCI42106.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 85.9 bits (211), Expect = 2.200e-13
Identity = 39/97 (40.21%), Postives = 60/97 (61.86%), Query Frame = 0
Query:  165 GDYAVGDMSGLIAQLMRGETQRYEAPHASEEAIAALETVVWGGGEEGQERECVVCQEGFGDGRVLKRMPCGHVFHGECLETWLRRHANNCPVCRREI 262
            GDY VG++S +I QLM+ ++ R+  P A++EAI  L  +     +     EC VC++ F      +RMPC H FH +C+  WL++H N+CP+CR E+
Sbjct:  141 GDYVVGNLSTVINQLMQNDSNRHGTPPAAKEAIEKLPMLAITQEDININPECAVCKDEFNLAEEARRMPCTHTFHPDCILPWLKQH-NSCPICRYEL 236          
BLAST of NO10G03320 vs. NCBI_GenBank
Match: XP_017224236.1 (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Daucus carota subsp. sativus] >KZM82796.1 hypothetical protein DCAR_030365 [Daucus carota subsp. sativus])

HSP 1 Score: 85.9 bits (211), Expect = 2.200e-13
Identity = 50/123 (40.65%), Postives = 67/123 (54.47%), Query Frame = 0
Query:  164 MGDYAVGD-MSGLIAQLMRGETQRYEAPHASEEAIAALETVVWGGGEEGQE-RECVVCQEGFGDGRVLKRMPCGHVFHGECLETWLRRHANNCPVCRREI-------KSRERGGGGAGGEESA 278
            +GDY +G  +  LI QL   +  RY  P AS  A+  L  VV      G +  +C VCQ+ F    V+K+MPC HV+H ECL  WL  H N+CPVCR E+       ++R RG   +GGE  +
Sbjct:  146 LGDYFLGQGLEQLIQQLAENDPNRYGTPPASRTAVEGLPDVVVDDKLLGSDLAQCAVCQDDFEKDMVVKQMPCKHVYHSECLLPWLELH-NSCPVCRYELPTDDPDYENRVRGTAASGGENDS 267          
BLAST of NO10G03320 vs. NCBI_GenBank
Match: GAV72272.1 (zf-RING_2 domain-containing protein/zf-RING_3 domain-containing protein, partial [Cephalotus follicularis])

HSP 1 Score: 85.9 bits (211), Expect = 2.200e-13
Identity = 48/120 (40.00%), Postives = 69/120 (57.50%), Query Frame = 0
Query:  164 MGDYAVGD-MSGLIAQLMRGETQRYEAPHASEEAIAALETV-VWGGGEEGQERECVVCQEGFGDGRVLKRMPCGHVFHGECLETWLRRHANNCPVCRREIKSRE--------RGGGGAGG 274
            +GDY +G  +  LI QL   +  RY  P AS+ AI +L+TV V     E +  +C VC++ F  G  +K+MPC H++H EC+  WL  H N+CPVCR E+ + +        RGG  +GG
Sbjct:  173 LGDYFIGPRLDDLIQQLAENDPNRYGTPPASKSAIESLKTVKVTEQVMESEMNQCAVCKDAFERGNEVKQMPCKHIYHEECILPWLEMH-NSCPVCRYELPTDDPDYENRVARGGHESGG 291          
The following BLAST results are available for this feature:
BLAST of NO10G03320 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25547.11.300e-2962.93e3 ubiquitin-protein ligase ring1 [Nannochloropsis... [more]
XP_019441686.11.500e-1443.90PREDICTED: E3 ubiquitin-protein ligase RING1 [Lupi... [more]
CCA20603.17.500e-1441.24conserved hypothetical protein [Albugo laibachii N... [more]
XP_022572242.19.800e-1445.38E3 ubiquitin-protein ligase RING1-like [Brassica n... [more]
XP_019187789.11.300e-1340.50PREDICTED: E3 ubiquitin-protein ligase RING1 [Ipom... [more]
XP_012570237.11.700e-1342.37PREDICTED: E3 ubiquitin-protein ligase RING1-like ... [more]
XP_018464716.11.700e-1341.73PREDICTED: E3 ubiquitin-protein ligase RING1-like ... [more]
CCI42106.12.200e-1340.21unnamed protein product [Albugo candida][more]
XP_017224236.12.200e-1340.65PREDICTED: E3 ubiquitin-protein ligase RING1-like ... [more]
GAV72272.12.200e-1340.00zf-RING_2 domain-containing protein/zf-RING_3 doma... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR013ngnoR013Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G03320.1NO10G03320.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|554005gene_3865Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100130g11gene4955Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G03320.1NO10G03320.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G03320 ID=NO10G03320|Name=NO10G03320|organism=Nannochloropsis oceanica|type=gene|length=837bp
ATGGGAAATGGGGGGAGAGTTGGAGGGACAGGGGAGGGGGGAGGAGAAGA
AGATGGAGGAGGAGAAGGAAGAGGAGAAGGAGTAGGAGGGGGGGGGTCTT
CGGTGAGGATGATGGCGCCGATACCATTGCATGCGTTGTTTCAAGGACAA
GGAGGGGAAAGGGAGATGGGGAGATGGGGTAGACAAGGAGGAGGAGGGTC
ACAAGTATATCAGCAGCAACGGCGGGGGCGACGACGGCAGCGGACCGAGT
CAGAAGGGGGAGGGGCACGAATGGTGGATGCTGAGGAGGAAGAGGGCGAG
GAAGGGGAGGAAGGGCCAGGGAACCGGCTGGTGGAGCTAGTGATGGAAAG
TATCAGTCGCTCGTTGACTGCCCAGATGAATGAAGGAGGGGGTGGGGGAG
GAGGGGGAGGAGGAGGAGCTGCTGATTTTTGGGGAAGCCTTGTGGGAGGG
TTGGTTGGTGGTGGTGGAGGAGGAGGGGGGGGGGCAACGATGGGGGATTA
CGCGGTAGGAGACATGAGCGGCTTGATTGCTCAGTTGATGAGGGGCGAGA
CACAGAGGTATGAAGCTCCTCATGCTAGTGAAGAGGCGATTGCGGCGTTG
GAGACAGTCGTGTGGGGTGGGGGGGAGGAGGGGCAGGAGAGGGAGTGTGT
GGTGTGTCAGGAGGGGTTCGGGGATGGGAGGGTCTTGAAGAGAATGCCGT
GTGGTCACGTGTTTCATGGAGAGTGCCTGGAGACCTGGTTGAGAAGGCAT
GCGAACAACTGCCCGGTGTGTAGGAGGGAGATCAAGAGTAGGGAGAGAGG
TGGAGGAGGAGCAGGAGGAGAGGAAAGCGCTAGATAG
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protein sequence of NO10G03320.1

>NO10G03320.1-protein ID=NO10G03320.1-protein|Name=NO10G03320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=279bp
MGNGGRVGGTGEGGGEEDGGGEGRGEGVGGGGSSVRMMAPIPLHALFQGQ
GGEREMGRWGRQGGGGSQVYQQQRRGRRRQRTESEGGGARMVDAEEEEGE
EGEEGPGNRLVELVMESISRSLTAQMNEGGGGGGGGGGGAADFWGSLVGG
LVGGGGGGGGGATMGDYAVGDMSGLIAQLMRGETQRYEAPHASEEAIAAL
ETVVWGGGEEGQERECVVCQEGFGDGRVLKRMPCGHVFHGECLETWLRRH
ANNCPVCRREIKSRERGGGGAGGEESAR*
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Synonyms
Publications