NO10G03320.1, NO10G03320.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G03320.1
Unique NameNO10G03320.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length837
Alignment locationchr10:930344..931180 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:930344..931180 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G03320.1 vs.
Match: EWM25547.1 (e3 ubiquitin-protein ligase ring1 [Nannochloropsis gaditana])

HSP 1 Score: 139.4 bits (350), Expect = 1.700e-29
Identity = 73/116 (62.93%), Postives = 82/116 (70.69%), Query Frame = 0 
Query:  172 MSGLIAQLMRGETQRYEAPHASEEAIAALETVVW---------GGGEEGQERECVVCQEGFGDGRVLKRMPCGHVFHGECLETWLRRHANNCPVCRREIKSRERGGGGAGGEESAR 279
            M+ L+AQLMR E  +  A  ASE AIA+LETVVW         GGG E  ERECVVCQE  GDG+VLKRMPCGHVFHGEC+ETWLRRHANNCP+CRR ++  E G  G  GE   R
Sbjct:    1 MNALLAQLMRREAHQTHASPASERAIASLETVVWEEVREGTDRGGGAE--ERECVVCQEELGDGKVLKRMPCGHVFHGECVETWLRRHANNCPICRRALE--EEGEPGREGEGGGR 112
The following BLAST results are available for this feature:
BLAST of NO10G03320.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25547.11.700e-2962.93e3 ubiquitin-protein ligase ring1 [Nannochloropsis... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G03320NO10G03320Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G03320.1NO10G03320.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G03320.1.cds1NO10G03320.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G03320.1 ID=NO10G03320.1|Name=NO10G03320.1|organism=Nannochloropsis oceanica|type=mRNA|length=837bp
ATGGGAAATGGGGGGAGAGTTGGAGGGACAGGGGAGGGGGGAGGAGAAGA
AGATGGAGGAGGAGAAGGAAGAGGAGAAGGAGTAGGAGGGGGGGGGTCTT
CGGTGAGGATGATGGCGCCGATACCATTGCATGCGTTGTTTCAAGGACAA
GGAGGGGAAAGGGAGATGGGGAGATGGGGTAGACAAGGAGGAGGAGGGTC
ACAAGTATATCAGCAGCAACGGCGGGGGCGACGACGGCAGCGGACCGAGT
CAGAAGGGGGAGGGGCACGAATGGTGGATGCTGAGGAGGAAGAGGGCGAG
GAAGGGGAGGAAGGGCCAGGGAACCGGCTGGTGGAGCTAGTGATGGAAAG
TATCAGTCGCTCGTTGACTGCCCAGATGAATGAAGGAGGGGGTGGGGGAG
GAGGGGGAGGAGGAGGAGCTGCTGATTTTTGGGGAAGCCTTGTGGGAGGG
TTGGTTGGTGGTGGTGGAGGAGGAGGGGGGGGGGCAACGATGGGGGATTA
CGCGGTAGGAGACATGAGCGGCTTGATTGCTCAGTTGATGAGGGGCGAGA
CACAGAGGTATGAAGCTCCTCATGCTAGTGAAGAGGCGATTGCGGCGTTG
GAGACAGTCGTGTGGGGTGGGGGGGAGGAGGGGCAGGAGAGGGAGTGTGT
GGTGTGTCAGGAGGGGTTCGGGGATGGGAGGGTCTTGAAGAGAATGCCGT
GTGGTCACGTGTTTCATGGAGAGTGCCTGGAGACCTGGTTGAGAAGGCAT
GCGAACAACTGCCCGGTGTGTAGGAGGGAGATCAAGAGTAGGGAGAGAGG
TGGAGGAGGAGCAGGAGGAGAGGAAAGCGCTAGATAG
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protein sequence of NO10G03320.1

>NO10G03320.1-protein ID=NO10G03320.1-protein|Name=NO10G03320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=279bp
MGNGGRVGGTGEGGGEEDGGGEGRGEGVGGGGSSVRMMAPIPLHALFQGQ
GGEREMGRWGRQGGGGSQVYQQQRRGRRRQRTESEGGGARMVDAEEEEGE
EGEEGPGNRLVELVMESISRSLTAQMNEGGGGGGGGGGGAADFWGSLVGG
LVGGGGGGGGGATMGDYAVGDMSGLIAQLMRGETQRYEAPHASEEAIAAL
ETVVWGGGEEGQERECVVCQEGFGDGRVLKRMPCGHVFHGECLETWLRRH
ANNCPVCRREIKSRERGGGGAGGEESAR*
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mRNA from alignment at chr10:930344..931180+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G03320.1 ID=NO10G03320.1|Name=NO10G03320.1|organism=Nannochloropsis oceanica|type=mRNA|length=837bp|location=Sequence derived from alignment at chr10:930344..931180+ (Nannochloropsis oceanica)
ATGGGAAATGGGGGGAGAGTTGGAGGGACAGGGGAGGGGGGAGGAGAAGA
AGATGGAGGAGGAGAAGGAAGAGGAGAAGGAGTAGGAGGGGGGGGGTCTT
CGGTGAGGATGATGGCGCCGATACCATTGCATGCGTTGTTTCAAGGACAA
GGAGGGGAAAGGGAGATGGGGAGATGGGGTAGACAAGGAGGAGGAGGGTC
ACAAGTATATCAGCAGCAACGGCGGGGGCGACGACGGCAGCGGACCGAGT
CAGAAGGGGGAGGGGCACGAATGGTGGATGCTGAGGAGGAAGAGGGCGAG
GAAGGGGAGGAAGGGCCAGGGAACCGGCTGGTGGAGCTAGTGATGGAAAG
TATCAGTCGCTCGTTGACTGCCCAGATGAATGAAGGAGGGGGTGGGGGAG
GAGGGGGAGGAGGAGGAGCTGCTGATTTTTGGGGAAGCCTTGTGGGAGGG
TTGGTTGGTGGTGGTGGAGGAGGAGGGGGGGGGGCAACGATGGGGGATTA
CGCGGTAGGAGACATGAGCGGCTTGATTGCTCAGTTGATGAGGGGCGAGA
CACAGAGGTATGAAGCTCCTCATGCTAGTGAAGAGGCGATTGCGGCGTTG
GAGACAGTCGTGTGGGGTGGGGGGGAGGAGGGGCAGGAGAGGGAGTGTGT
GGTGTGTCAGGAGGGGTTCGGGGATGGGAGGGTCTTGAAGAGAATGCCGT
GTGGTCACGTGTTTCATGGAGAGTGCCTGGAGACCTGGTTGAGAAGGCAT
GCGAACAACTGCCCGGTGTGTAGGAGGGAGATCAAGAGTAGGGAGAGAGG
TGGAGGAGGAGCAGGAGGAGAGGAAAGCGCTAGATAG
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Coding sequence (CDS) from alignment at chr10:930344..931180+

>NO10G03320.1 ID=NO10G03320.1|Name=NO10G03320.1|organism=Nannochloropsis oceanica|type=CDS|length=837bp|location=Sequence derived from alignment at chr10:930344..931180+ (Nannochloropsis oceanica)
ATGGGAAATGGGGGGAGAGTTGGAGGGACAGGGGAGGGGGGAGGAGAAGA
AGATGGAGGAGGAGAAGGAAGAGGAGAAGGAGTAGGAGGGGGGGGGTCTT
CGGTGAGGATGATGGCGCCGATACCATTGCATGCGTTGTTTCAAGGACAA
GGAGGGGAAAGGGAGATGGGGAGATGGGGTAGACAAGGAGGAGGAGGGTC
ACAAGTATATCAGCAGCAACGGCGGGGGCGACGACGGCAGCGGACCGAGT
CAGAAGGGGGAGGGGCACGAATGGTGGATGCTGAGGAGGAAGAGGGCGAG
GAAGGGGAGGAAGGGCCAGGGAACCGGCTGGTGGAGCTAGTGATGGAAAG
TATCAGTCGCTCGTTGACTGCCCAGATGAATGAAGGAGGGGGTGGGGGAG
GAGGGGGAGGAGGAGGAGCTGCTGATTTTTGGGGAAGCCTTGTGGGAGGG
TTGGTTGGTGGTGGTGGAGGAGGAGGGGGGGGGGCAACGATGGGGGATTA
CGCGGTAGGAGACATGAGCGGCTTGATTGCTCAGTTGATGAGGGGCGAGA
CACAGAGGTATGAAGCTCCTCATGCTAGTGAAGAGGCGATTGCGGCGTTG
GAGACAGTCGTGTGGGGTGGGGGGGAGGAGGGGCAGGAGAGGGAGTGTGT
GGTGTGTCAGGAGGGGTTCGGGGATGGGAGGGTCTTGAAGAGAATGCCGT
GTGGTCACGTGTTTCATGGAGAGTGCCTGGAGACCTGGTTGAGAAGGCAT
GCGAACAACTGCCCGGTGTGTAGGAGGGAGATCAAGAGTAGGGAGAGAGG
TGGAGGAGGAGCAGGAGGAGAGGAAAGCGCTAGATAG
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Synonyms
Publications