NO10G03240, NO10G03240 (gene) Nannochloropsis oceanica

Overview
NameNO10G03240
Unique NameNO10G03240
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1787
Alignment locationchr10:911271..913057 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:911271..913057 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR018962DUF1995
Homology
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BLAST of NO10G03240 vs. NCBI_GenBank
Match: EWM25550.1 (protein of unknown function DUF1995 [Nannochloropsis gaditana])

HSP 1 Score: 445.7 bits (1145), Expect = 1.800e-121
Identity = 262/451 (58.09%), Postives = 309/451 (68.51%), Query Frame = 0 
Query:    3 ATPRATSVARPPPMGWRLKNTLWAAILGLSVLPNVESSSFVNSQATAFGYAAPPSSFYPPGSMEGYYPPSPSQGAPRRPLRRFPTFPDTPAGLAHDIAGNIAKMVDEDKVRQDLKKQAQEGIEAAAXXXXXXLLITAASRTPLPNFATGLTTSAPRLRVDLQLDDMSDFSEEWSLAVSHRYLRFYEKMLLTLRAQGYQRVVAVFGHREEASVVEKRLRQAGAFGQLKIEYLARRGDEVESGSRAGGAKEKRGVASPAFPLGGDG----SRKRIDIGSNPDMVIFFNPQNVGGDLAELTEFQRLTAVATLRGAPVVLVNPALTAFSHLPQGMMDEDYVRPMILSDFKPCFQASAHKYKYNPFLSYSIVRRGGEEAEEGGGEGPWEVFAHDGRLPESGWAYLESRHEEPFRLEVESTFFDSCFYIQKAPGGGEGGEGGVPEE--EEANSVSST 448
            +T R+T+  + PPMG R K      +L L++L          + AT FGYA P SSFYP GS    Y P  ++  PRRPLR FPTFPDTP+GLA DIA ++A+M++ED       +Q         XXXXXX        +P P+    L TSAPRLRVDLQLDD+ D SE+WS AVSHRYL  YEK+LL LR  GY RVVAVFG REEAS VEKRLRQ GA  +L+IEYL+R   E E  +   G K +    +P+FPLGG        KRIDIG+ P+MV+FF PQN  G LAE++EFQRLTA+ATLRGAPVVLVNPALTA+SHLPQG M E +VRPMI+SDF PCFQA+A++YKYNP+LSYSIVRRGG   E G   GPW VFAHD RLP SGWAYLESR EEP+RLEVES +FDSCFYIQK   G  GG   V E   +E N+V S+
Sbjct:    5 STLRSTT-GQEPPMGGRTKFGFALIVLDLTILQGAALGLGSCTHATGFGYAGPASSFYPQGSQGEAYLPYTTRALPRRPLRTFPTFPDTPSGLADDIATSVARMIEEDA----RHRQXXXXXXXXXXXXXXXXXXXXXXXSPGPS----LITSAPRLRVDLQLDDIHDLSEDWSCAVSHRYLPLYEKVLLNLRNHGYHRVVAVFGRREEASFVEKRLRQGGALDELQIEYLSRPRQESEEYAEFEGKKRR----APSFPLGGSAKSFPKTKRIDIGNKPEMVVFFVPQNAAGSLAEVSEFQRLTAIATLRGAPVVLVNPALTAYSHLPQGGMGE-HVRPMIMSDFVPCFQAAAYRYKYNPYLSYSIVRRGG---EAGWERGPWGVFAHDARLPGSGWAYLESRFEEPYRLEVESRYFDSCFYIQKT-AGPRGGRSRVGENPFQEVNAVPSS 437
The following BLAST results are available for this feature:
BLAST of NO10G03240 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25550.11.800e-12158.09protein of unknown function DUF1995 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001200NSK001200Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G03240.1NO10G03240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100130g2gene4961Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G03240.1NO10G03240.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G03240 ID=NO10G03240|Name=NO10G03240|organism=Nannochloropsis oceanica|type=gene|length=1787bp
GCTTGCGTTCGTATATTATATGACTTTGCTTCCCGACCCACACTTAAACC
CTAGACCCCCTCTTTATTTACATGTCCACAACACAGTCAGCCTTATCATC
GCTGACTGGGCAGCTGGGCAGTACATTCAGCATCTTGTGTCCTTTCCCGA
AGCCCTTTACGCGCCTACTTTTCCTTCTCACACAGCCTTGTCATGGGTGC
AACGCCGAGAGCAACATCCGTTGCCCGTCCGCCACCCATGGGCTGGCGTC
TTAAAAACACGCTTTGGGCAGCCATTTTAGGCCTCAGTGTATTACCAAAT
GTTGAATCTTCCTCCTTTGTCAACTCTCAAGCCACGGCTTTTGGGTACGC
GGCCCCACCATCGTCATTTTACCCCCCTGGCTCGATGGAGGGCTACTATC
CTCCCTCCCCCTCCCAAGGTGCACCTCGAAGACCCTTGCGCCGCTTCCCC
ACTTTCCCCGACACGCCTGCAGGGCTTGCACATGACATTGCGGGGAACAT
CGCCAAGATGGTGGACGAGGACAAAGTAAGGCAAGACCTCAAAAAACAAG
CTCAAGAAGGCATCGAGGCCGCCGCCTCGGCCGCGGCGTCATCGTTGCTC
ATCACCGCCGCGAGCCGCACGCCCTTACCTAATTTCGCCACGGGCCTCAC
TACCTCAGCGCCTCGATTACGTGTCGACTTGCAATTGGACGATATGAGCG
ACTTTTCAGAGGAGTGGTCTCTGGCTGTGAGCCATCGTTATTTGCGATTT
TATGAAAAGATGCTCTTAACGCTGCGGGCGCAGGGGTACCAGCGTGTGGT
GGCCGTCTTTGGTCACAGGGAGGAAGCATCGGTCGTAGAGAAACGCTTGA
GGCAAGCAGGGGCATTTGGCCAGCTGAAGATTGAATATTTGGCACGAAGG
GGGGACGAGGTGGAATCGGGATCCAGGGCAGGTGGAGCGAAGGAGAAACG
CGGCGTTGCTTCTCCTGCATTTCCGCTTGGTGGTGACGGCAGCAGGAAAC
GGATCGACATCGGTTCAAATCCCGATATGGTTATATTTTTCAATCCTCAA
AATGTTGGAGGGGACCTGGCTGAGCTGACGGAGTTCCAAAGACTCACGGC
AGTGGCGACGCTGCGGGGTGCACCGGTGGTGCTGGTAAATCCTGCATTGA
CCGCCTTTTCTCACCTCCCTCAGGGGATGATGGACGAGGACTATGTCCGT
CCTATGATATTGAGTGATTTCAAGCCCTGCTTCCAGGCGTCGGCGCACAA
GTACAAATACAATCCGTTTTTATCCTACTCGATCGTGAGGAGGGGGGGAG
AGGAAGCGGAGGAGGGAGGGGGGGAGGGACCGTGGGAGGTGTTTGCACAT
GATGGGCGGTTGCCGGAGTCAGGATGGGCCTATTTGGAGTCGAGGCACGA
GGAACCATTCAGGTTAGAAGTGGAGAGCACGTTTTTTGACTCGTGCTTTT
ATATTCAGAAGGCCCCGGGGGGAGGGGAAGGGGGGGAGGGAGGGGTGCCG
GAAGAGGAAGAGGCGAATTCTGTGTCGTCGACATTTGATTCTTGATGAGA
CAGAGGGAGAAAAGGAAGGAGAGGAAAGGGGAGGGAGAGAAAAGGCACAT
CATCGAGGGGTGTGCCTATGTATTTTAATGTGTACGGCTGTGGATGCGTG
GCCGGCTTCTGTTACTGGTCGCAGGGGGAGACTGTAGGAGGGAGGGAGGG
ACGGTGCGTGTTTTATACGAGTAGAAGTTTGAACCGGAAAGACATCGACG
ACGTACGATGCAACAAAGCAACAAATCCACATCAAAG
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protein sequence of NO10G03240.1

>NO10G03240.1-protein ID=NO10G03240.1-protein|Name=NO10G03240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=451bp
MGATPRATSVARPPPMGWRLKNTLWAAILGLSVLPNVESSSFVNSQATAF
GYAAPPSSFYPPGSMEGYYPPSPSQGAPRRPLRRFPTFPDTPAGLAHDIA
GNIAKMVDEDKVRQDLKKQAQEGIEAAASAAASSLLITAASRTPLPNFAT
GLTTSAPRLRVDLQLDDMSDFSEEWSLAVSHRYLRFYEKMLLTLRAQGYQ
RVVAVFGHREEASVVEKRLRQAGAFGQLKIEYLARRGDEVESGSRAGGAK
EKRGVASPAFPLGGDGSRKRIDIGSNPDMVIFFNPQNVGGDLAELTEFQR
LTAVATLRGAPVVLVNPALTAFSHLPQGMMDEDYVRPMILSDFKPCFQAS
AHKYKYNPFLSYSIVRRGGEEAEEGGGEGPWEVFAHDGRLPESGWAYLES
RHEEPFRLEVESTFFDSCFYIQKAPGGGEGGEGGVPEEEEANSVSSTFDS
*
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Synonyms
Publications