NO10G03240.1, NO10G03240.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G03240.1
Unique NameNO10G03240.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1787
Alignment locationchr10:911271..913057 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:911271..913057 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G03240.1 vs.
Match: EWM25550.1 (protein of unknown function DUF1995 [Nannochloropsis gaditana])

HSP 1 Score: 458.8 bits (1179), Expect = 2.000e-125
Identity = 260/451 (57.65%), Postives = 315/451 (69.84%), Query Frame = 0 
Query:    3 ATPRATSVARPPPMGWRLKNTLWAAILGLSVLPNVESSSFVNSQATAFGYAAPPSSFYPPGSMEGYYPPSPSQGAPRRPLRRFPTFPDTPAGLAHDIAGNIAKMVDEDKVRQDLKKQAQEGIEAAASAAASSLLITAASRTPLPNFATGLTTSAPRLRVDLQLDDMSDFSEEWSLAVSHRYLRFYEKMLLTLRAQGYQRVVAVFGHREEASVVEKRLRQAGAFGQLKIEYLARRGDEVESGSRAGGAKEKRGVASPAFPLGGDGSR----KRIDIGSNPDMVIFFNPQNVGGDLAELTEFQRLTAVATLRGAPVVLVNPALTAFSHLPQGMMDEDYVRPMILSDFKPCFQASAHKYKYNPFLSYSIVRRGGEEAEEGGGEGPWEVFAHDGRLPESGWAYLESRHEEPFRLEVESTFFDSCFYIQKAPGGGEGGEGGVPEE--EEANSVSST 448
            +T R+T+  + PPMG R K      +L L++L          + AT FGYA P SSFYP GS    Y P  ++  PRRPLR FPTFPDTP+GLA DIA ++A+M++ED   + L+ +A       A++ ++S+ +  AS +P+      L TSAPRLRVDLQLDD+ D SE+WS AVSHRYL  YEK+LL LR  GY RVVAVFG REEAS VEKRLRQ GA  +L+IEYL+R   E E  +   G K +    +P+FPLGG        KRIDIG+ P+MV+FF PQN  G LAE++EFQRLTA+ATLRGAPVVLVNPALTA+SHLPQG M E +VRPMI+SDF PCFQA+A++YKYNP+LSYSIVRRGGE   E    GPW VFAHD RLP SGWAYLESR EEP+RLEVES +FDSCFYIQK   G  GG   V E   +E N+V S+
Sbjct:    5 STLRSTT-GQEPPMGGRTKFGFALIVLDLTILQGAALGLGSCTHATGFGYAGPASSFYPQGSQGEAYLPYTTRALPRRPLRTFPTFPDTPSGLADDIATSVARMIEEDARHRQLEAEA-------AASVSTSMSLPRASPSPISP-GPSLITSAPRLRVDLQLDDIHDLSEDWSCAVSHRYLPLYEKVLLNLRNHGYHRVVAVFGRREEASFVEKRLRQGGALDELQIEYLSRPRQESEEYAEFEGKKRR----APSFPLGGSAKSFPKTKRIDIGNKPEMVVFFVPQNAAGSLAEVSEFQRLTAIATLRGAPVVLVNPALTAYSHLPQGGMGE-HVRPMIMSDFVPCFQAAAYRYKYNPYLSYSIVRRGGEAGWE---RGPWGVFAHDARLPGSGWAYLESRFEEPYRLEVESRYFDSCFYIQKT-AGPRGGRSRVGENPFQEVNAVPSS 437
The following BLAST results are available for this feature:
BLAST of NO10G03240.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25550.12.000e-12557.65protein of unknown function DUF1995 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G03240NO10G03240Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G03240.1NO10G03240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G03240.1.cds1NO10G03240.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G03240.1 ID=NO10G03240.1|Name=NO10G03240.1|organism=Nannochloropsis oceanica|type=mRNA|length=1787bp
GCTTGCGTTCGTATATTATATGACTTTGCTTCCCGACCCACACTTAAACC
CTAGACCCCCTCTTTATTTACATGTCCACAACACAGTCAGCCTTATCATC
GCTGACTGGGCAGCTGGGCAGTACATTCAGCATCTTGTGTCCTTTCCCGA
AGCCCTTTACGCGCCTACTTTTCCTTCTCACACAGCCTTGTCATGGGTGC
AACGCCGAGAGCAACATCCGTTGCCCGTCCGCCACCCATGGGCTGGCGTC
TTAAAAACACGCTTTGGGCAGCCATTTTAGGCCTCAGTGTATTACCAAAT
GTTGAATCTTCCTCCTTTGTCAACTCTCAAGCCACGGCTTTTGGGTACGC
GGCCCCACCATCGTCATTTTACCCCCCTGGCTCGATGGAGGGCTACTATC
CTCCCTCCCCCTCCCAAGGTGCACCTCGAAGACCCTTGCGCCGCTTCCCC
ACTTTCCCCGACACGCCTGCAGGGCTTGCACATGACATTGCGGGGAACAT
CGCCAAGATGGTGGACGAGGACAAAGTAAGGCAAGACCTCAAAAAACAAG
CTCAAGAAGGCATCGAGGCCGCCGCCTCGGCCGCGGCGTCATCGTTGCTC
ATCACCGCCGCGAGCCGCACGCCCTTACCTAATTTCGCCACGGGCCTCAC
TACCTCAGCGCCTCGATTACGTGTCGACTTGCAATTGGACGATATGAGCG
ACTTTTCAGAGGAGTGGTCTCTGGCTGTGAGCCATCGTTATTTGCGATTT
TATGAAAAGATGCTCTTAACGCTGCGGGCGCAGGGGTACCAGCGTGTGGT
GGCCGTCTTTGGTCACAGGGAGGAAGCATCGGTCGTAGAGAAACGCTTGA
GGCAAGCAGGGGCATTTGGCCAGCTGAAGATTGAATATTTGGCACGAAGG
GGGGACGAGGTGGAATCGGGATCCAGGGCAGGTGGAGCGAAGGAGAAACG
CGGCGTTGCTTCTCCTGCATTTCCGCTTGGTGGTGACGGCAGCAGGAAAC
GGATCGACATCGGTTCAAATCCCGATATGGTTATATTTTTCAATCCTCAA
AATGTTGGAGGGGACCTGGCTGAGCTGACGGAGTTCCAAAGACTCACGGC
AGTGGCGACGCTGCGGGGTGCACCGGTGGTGCTGGTAAATCCTGCATTGA
CCGCCTTTTCTCACCTCCCTCAGGGGATGATGGACGAGGACTATGTCCGT
CCTATGATATTGAGTGATTTCAAGCCCTGCTTCCAGGCGTCGGCGCACAA
GTACAAATACAATCCGTTTTTATCCTACTCGATCGTGAGGAGGGGGGGAG
AGGAAGCGGAGGAGGGAGGGGGGGAGGGACCGTGGGAGGTGTTTGCACAT
GATGGGCGGTTGCCGGAGTCAGGATGGGCCTATTTGGAGTCGAGGCACGA
GGAACCATTCAGGTTAGAAGTGGAGAGCACGTTTTTTGACTCGTGCTTTT
ATATTCAGAAGGCCCCGGGGGGAGGGGAAGGGGGGGAGGGAGGGGTGCCG
GAAGAGGAAGAGGCGAATTCTGTGTCGTCGACATTTGATTCTTGATGAGA
CAGAGGGAGAAAAGGAAGGAGAGGAAAGGGGAGGGAGAGAAAAGGCACAT
CATCGAGGGGTGTGCCTATGTATTTTAATGTGTACGGCTGTGGATGCGTG
GCCGGCTTCTGTTACTGGTCGCAGGGGGAGACTGTAGGAGGGAGGGAGGG
ACGGTGCGTGTTTTATACGAGTAGAAGTTTGAACCGGAAAGACATCGACG
ACGTACGATGCAACAAAGCAACAAATCCACATCAAAG
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protein sequence of NO10G03240.1

>NO10G03240.1-protein ID=NO10G03240.1-protein|Name=NO10G03240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=451bp
MGATPRATSVARPPPMGWRLKNTLWAAILGLSVLPNVESSSFVNSQATAF
GYAAPPSSFYPPGSMEGYYPPSPSQGAPRRPLRRFPTFPDTPAGLAHDIA
GNIAKMVDEDKVRQDLKKQAQEGIEAAASAAASSLLITAASRTPLPNFAT
GLTTSAPRLRVDLQLDDMSDFSEEWSLAVSHRYLRFYEKMLLTLRAQGYQ
RVVAVFGHREEASVVEKRLRQAGAFGQLKIEYLARRGDEVESGSRAGGAK
EKRGVASPAFPLGGDGSRKRIDIGSNPDMVIFFNPQNVGGDLAELTEFQR
LTAVATLRGAPVVLVNPALTAFSHLPQGMMDEDYVRPMILSDFKPCFQAS
AHKYKYNPFLSYSIVRRGGEEAEEGGGEGPWEVFAHDGRLPESGWAYLES
RHEEPFRLEVESTFFDSCFYIQKAPGGGEGGEGGVPEEEEANSVSSTFDS
*
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mRNA from alignment at chr10:911271..913057-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G03240.1 ID=NO10G03240.1|Name=NO10G03240.1|organism=Nannochloropsis oceanica|type=mRNA|length=1787bp|location=Sequence derived from alignment at chr10:911271..913057- (Nannochloropsis oceanica)
GCTTGCGTTCGTATATTATATGACTTTGCTTCCCGACCCACACTTAAACC
CTAGACCCCCTCTTTATTTACATGTCCACAACACAGTCAGCCTTATCATC
GCTGACTGGGCAGCTGGGCAGTACATTCAGCATCTTGTGTCCTTTCCCGA
AGCCCTTTACGCGCCTACTTTTCCTTCTCACACAGCCTTGTCATGGGTGC
AACGCCGAGAGCAACATCCGTTGCCCGTCCGCCACCCATGGGCTGGCGTC
TTAAAAACACGCTTTGGGCAGCCATTTTAGGCCTCAGTGTATTACCAAAT
GTTGAATCTTCCTCCTTTGTCAACTCTCAAGCCACGGCTTTTGGGTACGC
GGCCCCACCATCGTCATTTTACCCCCCTGGCTCGATGGAGGGCTACTATC
CTCCCTCCCCCTCCCAAGGTGCACCTCGAAGACCCTTGCGCCGCTTCCCC
ACTTTCCCCGACACGCCTGCAGGGCTTGCACATGACATTGCGGGGAACAT
CGCCAAGATGGTGGACGAGGACAAAGTAAGGCAAGACCTCAAAAAACAAG
CTCAAGAAGGCATCGAGGCCGCCGCCTCGGCCGCGGCGTCATCGTTGCTC
ATCACCGCCGCGAGCCGCACGCCCTTACCTAATTTCGCCACGGGCCTCAC
TACCTCAGCGCCTCGATTACGTGTCGACTTGCAATTGGACGATATGAGCG
ACTTTTCAGAGGAGTGGTCTCTGGCTGTGAGCCATCGTTATTTGCGATTT
TATGAAAAGATGCTCTTAACGCTGCGGGCGCAGGGGTACCAGCGTGTGGT
GGCCGTCTTTGGTCACAGGGAGGAAGCATCGGTCGTAGAGAAACGCTTGA
GGCAAGCAGGGGCATTTGGCCAGCTGAAGATTGAATATTTGGCACGAAGG
GGGGACGAGGTGGAATCGGGATCCAGGGCAGGTGGAGCGAAGGAGAAACG
CGGCGTTGCTTCTCCTGCATTTCCGCTTGGTGGTGACGGCAGCAGGAAAC
GGATCGACATCGGTTCAAATCCCGATATGGTTATATTTTTCAATCCTCAA
AATGTTGGAGGGGACCTGGCTGAGCTGACGGAGTTCCAAAGACTCACGGC
AGTGGCGACGCTGCGGGGTGCACCGGTGGTGCTGGTAAATCCTGCATTGA
CCGCCTTTTCTCACCTCCCTCAGGGGATGATGGACGAGGACTATGTCCGT
CCTATGATATTGAGTGATTTCAAGCCCTGCTTCCAGGCGTCGGCGCACAA
GTACAAATACAATCCGTTTTTATCCTACTCGATCGTGAGGAGGGGGGGAG
AGGAAGCGGAGGAGGGAGGGGGGGAGGGACCGTGGGAGGTGTTTGCACAT
GATGGGCGGTTGCCGGAGTCAGGATGGGCCTATTTGGAGTCGAGGCACGA
GGAACCATTCAGGTTAGAAGTGGAGAGCACGTTTTTTGACTCGTGCTTTT
ATATTCAGAAGGCCCCGGGGGGAGGGGAAGGGGGGGAGGGAGGGGTGCCG
GAAGAGGAAGAGGCGAATTCTGTGTCGTCGACATTTGATTCTTGATGAGA
CAGAGGGAGAAAAGGAAGGAGAGGAAAGGGGAGGGAGAGAAAAGGCACAT
CATCGAGGGGTGTGCCTATGTATTTTAATGTGTACGGCTGTGGATGCGTG
GCCGGCTTCTGTTACTGGTCGCAGGGGGAGACTGTAGGAGGGAGGGAGGG
ACGGTGCGTGTTTTATACGAGTAGAAGTTTGAACCGGAAAGACATCGACG
ACGTACGATGCAACAAAGCAACAAATCCACATCAAAG
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Coding sequence (CDS) from alignment at chr10:911271..913057-

>NO10G03240.1 ID=NO10G03240.1|Name=NO10G03240.1|organism=Nannochloropsis oceanica|type=CDS|length=1353bp|location=Sequence derived from alignment at chr10:911271..913057- (Nannochloropsis oceanica)
ATGGGTGCAACGCCGAGAGCAACATCCGTTGCCCGTCCGCCACCCATGGG
CTGGCGTCTTAAAAACACGCTTTGGGCAGCCATTTTAGGCCTCAGTGTAT
TACCAAATGTTGAATCTTCCTCCTTTGTCAACTCTCAAGCCACGGCTTTT
GGGTACGCGGCCCCACCATCGTCATTTTACCCCCCTGGCTCGATGGAGGG
CTACTATCCTCCCTCCCCCTCCCAAGGTGCACCTCGAAGACCCTTGCGCC
GCTTCCCCACTTTCCCCGACACGCCTGCAGGGCTTGCACATGACATTGCG
GGGAACATCGCCAAGATGGTGGACGAGGACAAAGTAAGGCAAGACCTCAA
AAAACAAGCTCAAGAAGGCATCGAGGCCGCCGCCTCGGCCGCGGCGTCAT
CGTTGCTCATCACCGCCGCGAGCCGCACGCCCTTACCTAATTTCGCCACG
GGCCTCACTACCTCAGCGCCTCGATTACGTGTCGACTTGCAATTGGACGA
TATGAGCGACTTTTCAGAGGAGTGGTCTCTGGCTGTGAGCCATCGTTATT
TGCGATTTTATGAAAAGATGCTCTTAACGCTGCGGGCGCAGGGGTACCAG
CGTGTGGTGGCCGTCTTTGGTCACAGGGAGGAAGCATCGGTCGTAGAGAA
ACGCTTGAGGCAAGCAGGGGCATTTGGCCAGCTGAAGATTGAATATTTGG
CACGAAGGGGGGACGAGGTGGAATCGGGATCCAGGGCAGGTGGAGCGAAG
GAGAAACGCGGCGTTGCTTCTCCTGCATTTCCGCTTGGTGGTGACGGCAG
CAGGAAACGGATCGACATCGGTTCAAATCCCGATATGGTTATATTTTTCA
ATCCTCAAAATGTTGGAGGGGACCTGGCTGAGCTGACGGAGTTCCAAAGA
CTCACGGCAGTGGCGACGCTGCGGGGTGCACCGGTGGTGCTGGTAAATCC
TGCATTGACCGCCTTTTCTCACCTCCCTCAGGGGATGATGGACGAGGACT
ATGTCCGTCCTATGATATTGAGTGATTTCAAGCCCTGCTTCCAGGCGTCG
GCGCACAAGTACAAATACAATCCGTTTTTATCCTACTCGATCGTGAGGAG
GGGGGGAGAGGAAGCGGAGGAGGGAGGGGGGGAGGGACCGTGGGAGGTGT
TTGCACATGATGGGCGGTTGCCGGAGTCAGGATGGGCCTATTTGGAGTCG
AGGCACGAGGAACCATTCAGGTTAGAAGTGGAGAGCACGTTTTTTGACTC
GTGCTTTTATATTCAGAAGGCCCCGGGGGGAGGGGAAGGGGGGGAGGGAG
GGGTGCCGGAAGAGGAAGAGGCGAATTCTGTGTCGTCGACATTTGATTCT
TGA
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Synonyms
Publications