NO10G03110, NO10G03110 (gene) Nannochloropsis oceanica

Overview
NameNO10G03110
Unique NameNO10G03110
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length746
Alignment locationchr10:872473..873218 +

Link to JBrowse

Properties
Property NameValue
DescriptionMembrane associated eicosanoid/glutathione metabolism-like domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:872473..873218 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR023352MAPEG-like_dom
IPR001129Membr-assoc_MAPEG
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO10G03110 vs. NCBI_GenBank
Match: EWM25519.1 (Membrane associated eicosanoid/glutathione metabolism-like domain protein [Nannochloropsis gaditana])

HSP 1 Score: 219.5 bits (558), Expect = 8.200e-54
Identity = 109/158 (68.99%), Postives = 131/158 (82.91%), Query Frame = 0 
Query:   24 LWSYCDATMPPLV-TPLRAILWCLALTFLPHLLRVPMVLRLKGRYNNLMARTHQVNKKDTKEHPESVKMIQRATAAHANSWEAFAYFSVSCIMAHILKLDVQVASSLCTLFLVLRFAYVLLYIVGTNEWVGAARSLVWVGGLVAAMRMSILALNQAGL 181
            +W +CD   PPLV TPLRAILWCLALTFLPH+LR+PMVL+LKG YN+LM RTHQ N++DT+++PE V+MIQR TAAHANSWEAF YFSV+CI+AH+LKL  ++AS LCTLFL LRF Y+LLYI GT  WVG  RSLVW    VAA R+ +L+L+QAGL
Sbjct:   21 VWGHCDNLAPPLVATPLRAILWCLALTFLPHILRIPMVLKLKGWYNHLMPRTHQFNERDTQQNPELVRMIQRTTAAHANSWEAFTYFSVACIVAHVLKLKEEIASRLCTLFLGLRFCYILLYIGGTQAWVGTLRSLVWFAAFVAAWRLILLSLSQAGL 178
The following BLAST results are available for this feature:
BLAST of NO10G03110 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25519.18.200e-5468.99Membrane associated eicosanoid/glutathione metabol... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G03110.1NO10G03110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585733gene_3889Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G03110.1NO10G03110.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G03110 ID=NO10G03110|Name=NO10G03110|organism=Nannochloropsis oceanica|type=gene|length=746bp
ACAGGATCCAAAACATGTTTGGTAGCAAGAAGAAAGATGCAGCTGCCAAG
GCCGCTGCCGCGGCTGCCTCCTCATCATCCGCGTTGTGGAGCTACTGCGA
CGCCACCATGCCACCGCTCGTTACCCCGCTCCGCGCCATTTTGTGGTGCT
TGGCCCTGACCTTTTTGCCGCACCTCCTGCGGGTGCCCATGGTGCTTCGA
CTGAAAGGACGATACAACAACTTGATGGCACGGACTCACCAGGTGAACAA
GAAGGACACCAAGGAGCATCCAGAATCTGTCAAAATGATCCAAAGGGCCA
CTGCCGCGCATGCCAATAGTTGGGAGGCCTTTGCGTACTTTTCCGTTTCA
TGCATCATGGCACACATCTTGAAGTTGGATGTCCAAGTTGCCTCTAGCCT
ATGCACCCTTTTTTTGGTGCTTCGATTTGCCTATGTGCTGCTGTACATCG
TGGGGACGAATGAGTGGGTCGGAGCGGCGCGGTCATTGGTATGGGTCGGG
GGCTTGGTTGCGGCGATGCGGATGTCGATTTTGGCCCTGAACCAAGCAGG
TTTATAACTAGAAGGAGGGAGGGACGTCAAGGGGGAAAGATAAGTGAGGA
TTTATGTCTGCTGTCTACCGATAATTGTATTGTTATGGAACTGAGGAAGA
AGACGGGGAGGAACAAGGCTTTGCCCATCTCATCGGAAGTTGAGATGTGG
CCATTGGCTTGTGTACCAAAGAATGAGACATGTGTTTTAACAGAAA
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protein sequence of NO10G03110.1

>NO10G03110.1-protein ID=NO10G03110.1-protein|Name=NO10G03110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=181bp
MFGSKKKDAAAKAAAAAASSSSALWSYCDATMPPLVTPLRAILWCLALTF
LPHLLRVPMVLRLKGRYNNLMARTHQVNKKDTKEHPESVKMIQRATAAHA
NSWEAFAYFSVSCIMAHILKLDVQVASSLCTLFLVLRFAYVLLYIVGTNE
WVGAARSLVWVGGLVAAMRMSILALNQAGL*
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Synonyms
Publications