NO10G03110.1, NO10G03110.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G03110.1
Unique NameNO10G03110.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length746
Alignment locationchr10:872473..873218 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:872473..873218 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G03110.1 vs.
Match: EWM25519.1 (Membrane associated eicosanoid/glutathione metabolism-like domain protein [Nannochloropsis gaditana])

HSP 1 Score: 225.3 bits (573), Expect = 1.500e-55
Identity = 122/181 (67.40%), Postives = 144/181 (79.56%), Query Frame = 0 
Query:    1 MFGSKKKDAAAKAAAAAASSSSALWSYCDATMPPLV-TPLRAILWCLALTFLPHLLRVPMVLRLKGRYNNLMARTHQVNKKDTKEHPESVKMIQRATAAHANSWEAFAYFSVSCIMAHILKLDVQVASSLCTLFLVLRFAYVLLYIVGTNEWVGAARSLVWVGGLVAAMRMSILALNQAGL 181
            MFG K K  AAK AA   SS S +W +CD   PPLV TPLRAILWCLALTFLPH+LR+PMVL+LKG YN+LM RTHQ N++DT+++PE V+MIQR TAAHANSWEAF YFSV+CI+AH+LKL  ++AS LCTLFL LRF Y+LLYI GT  WVG  RSLVW    VAA R+ +L+L+QAGL
Sbjct:    1 MFGFKNK--AAKEAAVVVSSPS-VWGHCDNLAPPLVATPLRAILWCLALTFLPHILRIPMVLKLKGWYNHLMPRTHQFNERDTQQNPELVRMIQRTTAAHANSWEAFTYFSVACIVAHVLKLKEEIASRLCTLFLGLRFCYILLYIGGTQAWVGTLRSLVWFAAFVAAWRLILLSLSQAGL 178
The following BLAST results are available for this feature:
BLAST of NO10G03110.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25519.11.500e-5567.40Membrane associated eicosanoid/glutathione metabol... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G03110NO10G03110Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G03110.1NO10G03110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G03110.1.cds1NO10G03110.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G03110.1 ID=NO10G03110.1|Name=NO10G03110.1|organism=Nannochloropsis oceanica|type=mRNA|length=746bp
ACAGGATCCAAAACATGTTTGGTAGCAAGAAGAAAGATGCAGCTGCCAAG
GCCGCTGCCGCGGCTGCCTCCTCATCATCCGCGTTGTGGAGCTACTGCGA
CGCCACCATGCCACCGCTCGTTACCCCGCTCCGCGCCATTTTGTGGTGCT
TGGCCCTGACCTTTTTGCCGCACCTCCTGCGGGTGCCCATGGTGCTTCGA
CTGAAAGGACGATACAACAACTTGATGGCACGGACTCACCAGGTGAACAA
GAAGGACACCAAGGAGCATCCAGAATCTGTCAAAATGATCCAAAGGGCCA
CTGCCGCGCATGCCAATAGTTGGGAGGCCTTTGCGTACTTTTCCGTTTCA
TGCATCATGGCACACATCTTGAAGTTGGATGTCCAAGTTGCCTCTAGCCT
ATGCACCCTTTTTTTGGTGCTTCGATTTGCCTATGTGCTGCTGTACATCG
TGGGGACGAATGAGTGGGTCGGAGCGGCGCGGTCATTGGTATGGGTCGGG
GGCTTGGTTGCGGCGATGCGGATGTCGATTTTGGCCCTGAACCAAGCAGG
TTTATAACTAGAAGGAGGGAGGGACGTCAAGGGGGAAAGATAAGTGAGGA
TTTATGTCTGCTGTCTACCGATAATTGTATTGTTATGGAACTGAGGAAGA
AGACGGGGAGGAACAAGGCTTTGCCCATCTCATCGGAAGTTGAGATGTGG
CCATTGGCTTGTGTACCAAAGAATGAGACATGTGTTTTAACAGAAA
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protein sequence of NO10G03110.1

>NO10G03110.1-protein ID=NO10G03110.1-protein|Name=NO10G03110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=181bp
MFGSKKKDAAAKAAAAAASSSSALWSYCDATMPPLVTPLRAILWCLALTF
LPHLLRVPMVLRLKGRYNNLMARTHQVNKKDTKEHPESVKMIQRATAAHA
NSWEAFAYFSVSCIMAHILKLDVQVASSLCTLFLVLRFAYVLLYIVGTNE
WVGAARSLVWVGGLVAAMRMSILALNQAGL*
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mRNA from alignment at chr10:872473..873218+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G03110.1 ID=NO10G03110.1|Name=NO10G03110.1|organism=Nannochloropsis oceanica|type=mRNA|length=746bp|location=Sequence derived from alignment at chr10:872473..873218+ (Nannochloropsis oceanica)
ACAGGATCCAAAACATGTTTGGTAGCAAGAAGAAAGATGCAGCTGCCAAG
GCCGCTGCCGCGGCTGCCTCCTCATCATCCGCGTTGTGGAGCTACTGCGA
CGCCACCATGCCACCGCTCGTTACCCCGCTCCGCGCCATTTTGTGGTGCT
TGGCCCTGACCTTTTTGCCGCACCTCCTGCGGGTGCCCATGGTGCTTCGA
CTGAAAGGACGATACAACAACTTGATGGCACGGACTCACCAGGTGAACAA
GAAGGACACCAAGGAGCATCCAGAATCTGTCAAAATGATCCAAAGGGCCA
CTGCCGCGCATGCCAATAGTTGGGAGGCCTTTGCGTACTTTTCCGTTTCA
TGCATCATGGCACACATCTTGAAGTTGGATGTCCAAGTTGCCTCTAGCCT
ATGCACCCTTTTTTTGGTGCTTCGATTTGCCTATGTGCTGCTGTACATCG
TGGGGACGAATGAGTGGGTCGGAGCGGCGCGGTCATTGGTATGGGTCGGG
GGCTTGGTTGCGGCGATGCGGATGTCGATTTTGGCCCTGAACCAAGCAGG
TTTATAACTAGAAGGAGGGAGGGACGTCAAGGGGGAAAGATAAGTGAGGA
TTTATGTCTGCTGTCTACCGATAATTGTATTGTTATGGAACTGAGGAAGA
AGACGGGGAGGAACAAGGCTTTGCCCATCTCATCGGAAGTTGAGATGTGG
CCATTGGCTTGTGTACCAAAGAATGAGACATGTGTTTTAACAGAAA
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Coding sequence (CDS) from alignment at chr10:872473..873218+

>NO10G03110.1 ID=NO10G03110.1|Name=NO10G03110.1|organism=Nannochloropsis oceanica|type=CDS|length=543bp|location=Sequence derived from alignment at chr10:872473..873218+ (Nannochloropsis oceanica)
ATGTTTGGTAGCAAGAAGAAAGATGCAGCTGCCAAGGCCGCTGCCGCGGC
TGCCTCCTCATCATCCGCGTTGTGGAGCTACTGCGACGCCACCATGCCAC
CGCTCGTTACCCCGCTCCGCGCCATTTTGTGGTGCTTGGCCCTGACCTTT
TTGCCGCACCTCCTGCGGGTGCCCATGGTGCTTCGACTGAAAGGACGATA
CAACAACTTGATGGCACGGACTCACCAGGTGAACAAGAAGGACACCAAGG
AGCATCCAGAATCTGTCAAAATGATCCAAAGGGCCACTGCCGCGCATGCC
AATAGTTGGGAGGCCTTTGCGTACTTTTCCGTTTCATGCATCATGGCACA
CATCTTGAAGTTGGATGTCCAAGTTGCCTCTAGCCTATGCACCCTTTTTT
TGGTGCTTCGATTTGCCTATGTGCTGCTGTACATCGTGGGGACGAATGAG
TGGGTCGGAGCGGCGCGGTCATTGGTATGGGTCGGGGGCTTGGTTGCGGC
GATGCGGATGTCGATTTTGGCCCTGAACCAAGCAGGTTTATAA
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Synonyms
Publications