NO10G03080, NO10G03080 (gene) Nannochloropsis oceanica

Overview
NameNO10G03080
Unique NameNO10G03080
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2811
Alignment locationchr10:853126..855936 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:853126..855936 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO10G03080 vs. NCBI_GenBank
Match: EWM25532.1 (hypothetical protein Naga_100032g8 [Nannochloropsis gaditana])

HSP 1 Score: 368.6 bits (945), Expect = 2.500e-98
Identity = 193/264 (73.11%), Postives = 218/264 (82.58%), Query Frame = 0 
Query:  160 PQKRGIMTQAIISSSLR-TQRLLSPLLHSLPS-SSATCRHFWSPKFIRQLGLPWFAQVFYGTIFVIGVGVLAVSLFATSTAFAVLFLVAFAGFKLLNRQPHLMRQVMRRQRPPGAPPSFFGPLIDMMTDGVMLDGLKNARGSIERDVLEIINVHPKLGRYGTDFHTTGLHKMSMQVVNGADKHVVMQFLVASSKPREMFVQVVASRHEEEMGGEREGMERWEYEDVSVQTPDGKVIDLTEELLKGKTNRRIVIDVAPRHVKEEE 422
            P  R +MTQA    SLR T   + P + S  S      R+FWSP+F+RQLGLPWFAQVFYGT+FVIGVG LAV+LFATST FAVLFLVAF G+KL NRQP+LMRQVMRRQRP G+PPS FGPL+DMMTDG++ DGLK+ARG+IERDVL IIN HP+L RYGTDF +TGLHKMSMQVVN  +KHVVMQ LVASSKPREMFVQVVASRHEEE  G  +G ERW+YEDVSVQTPDGKVIDLT+EL KGK  RRI+IDV PR VK++E
Sbjct:  145 PSCRSVMTQA----SLRDTNARIEPKVPSQSSIQFVPRRNFWSPRFLRQLGLPWFAQVFYGTLFVIGVGALAVTLFATSTVFAVLFLVAFLGYKLFNRQPNLMRQVMRRQRPAGSPPSLFGPLLDMMTDGMLFDGLKSARGAIERDVLGIINSHPQLRRYGTDFRSTGLHKMSMQVVNEGEKHVVMQLLVASSKPREMFVQVVASRHEEEEDGTGDGEERWDYEDVSVQTPDGKVIDLTKELFKGKGGRRIIIDVPPRRVKKDE 404
The following BLAST results are available for this feature:
BLAST of NO10G03080 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25532.12.500e-9873.11hypothetical protein Naga_100032g8 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001182NSK001182Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G03080.1NO10G03080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585752gene_3896Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100032g8gene4979Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G03080.1NO10G03080.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G03080 ID=NO10G03080|Name=NO10G03080|organism=Nannochloropsis oceanica|type=gene|length=2811bp
CAGGCTAAGGATCAACTCGCTGCTTGTGATGCTTGTCGTGTGAGCCCGCC
TGGAACCTTGCGCCTCTTGCTCTGGCAACCTCAACGGGCACTGCTACCGC
CGCAGCCAGCATCGGCAACACGAAgtaagtcagtccgaacacaagtttcg
caattgatcgaacgccctaggctcttgcacgccgcatatctctacccctc
tcctcagaatagtggtgatgttttgtgttttgtctttttccaaatgatta
gaaacttgtcgtgactgcgtccagggtgggttgccatagcgtgttgtgcc
ttgaccggcggcacgaacgctcctgatactcgatgccatttatgagtcca
cgaaatgtgcattgtaaaggcgggagtagagcacagataccttttagtac
ttcgctttcatcttttgcgcctgcctcccttttcagtgtccttgtggccg
aaggagggtatgcgtggggagggagagagggagggagggagaaccctgtc
ttatattttatggtgggcagctgtgagatgtttggctgctttataaaggc
agacaggacactgcttgtcttcgtgacaagaagaaactcaattcaagacg
aataggtcggaggggcaagtgtgtgtcgttggtcttgtgactggcgagac
atgcatgtcctgttcccgtggaagagagctgcgccttccttctgggggta
aggcgcccatctactttcctccacgttttagcacgacccagacgcgacgg
tcatgcgagagaagaaggcttctttttgcctcgctttggggatttgtgtg
tatgtatgcatgtggtcctcttcccaaacgaggaaggagtcaactctctt
tttaatacgttttttccttttttgagggaaacgcgcgaccggataatgca
ctcatgcccgacgcggatatgtgcgaaaggtttctctcgcgacaactctt
tccaagtttgatccttccgccacatgagcacatcattctagtaagctgat
ggtaaaagacgcacatacaacgagacacgatgacaaggagcgggaggagc
agaaaggcgagaggaagagagaaattctctgactatatattcactggtgt
caatatcatttattttcatggcccctttctttcaaacaaccaaaaacgaa
acaaaccatgcagGCAATTTTGAAAACAAGAACACAAGGGGGGTCACAAA
ATGAAGGCAGCGCAACGGTTGGTGTTCCGCCACGTCGGCACCTGGTATGT
CCCCCTCTGTGCAGGAAGCCATGCCAGCACCAGTGCCAGGGCGACAAATA
GGATACAAGTGTCAGCAGCGGCAGCAGTGACGACGACAATAAGACCATAC
CCGCATGTATGGACATCGCCACCCAAGCCCGCTGCTTCTTCTTCCACCCT
TCCCAACACCACCATCAGTCATATCACGGTCACACCCCGTCCCTCGTTGA
CTCTGGAGTTGACAGCAGTAGCTGCATCAGCTCAAAGAGGTCCACGACGA
TCGCTATCCTCTCCTTCGTCTGAGATCTCGCCAATAGCACCGCTTTCCTC
ACTCCTCTCGTGCTCTTTCCACCCTTCCTCCTCCTCCTCCTACTCCTCCT
CCTACTCCTCCTCCTCCTCCTCCTTATCCTCCTCCTCCTCCTCCTCCTTA
TCCTTCTTCTCCTCCTCCTCTTTTTTCCCACAAAAACGAGGAATCATGAC
GCAAGCCATTATCTCCTCCTCCCTTCGCACACAACGTCTCCTCTCGCCCC
TCCTCCACTCCCTTCCCTCTTCTTCTGCGACATGCCGTCATTTTTGGTCC
CCGAAATTCATTCGCCAGTTGGGCTTACCCTGGTTTGCTCAAGTATTCTA
TGGAACGATTTTTGTGATTGGAGTTGGTGTATTAGCGGTCTCCCTCTTCG
CGACTTCAACGGCATTTGCTGTCTTGTTTTTGGTGGCGTTTGCCGGGTTT
AAACTTTTGAATCGGCAACCGCATTTGATGCGGCAGGTGATGCGGAGACA
GAGGCCTCCAGGGGCACCGCCATCGTTCTTTGGGCCGTTGATTGACATGA
TGACGGACGGTGTGATGTTGGATGGGTTGAAGAATGCGCGCGGTTCGATC
GAACGCGACGTGTTGGAGATTATTAATGTGCACCCGAAGTTGGGGAGATA
CGGGACGGATTTTCATACGACGGGTTTGCATAAGATGAGTATGCAGGTGG
TGAATGGAGCAGACAAGCATGTTGTGATGCAATTTTTGGTGGCCTCGAGT
AAACCAAGGGAGATGTTTGTTCAGGTGGTGGCGAGTCGGCATGAAGAGGA
GATGGGAGGGGAACGAGAGGGGATGGAGAGGTGGGAATACGAGGACGTGT
CTGTGCAGACGCCCGACGGAAAGGTCATCGATTTGACGGAGGAACTGCTC
AAGGGCAAGACAAATAGGCGAATCGTCATTGACGTGGCTCCAAGGCATGT
TAAAGAGGAAGAGTAGAGGCCTTCCAACCAAGACTCGTTTGACTGGCATG
GAGGTGGCGGACACCAGGACCCGCACCACCTTTACTTCCACCACCACTAC
CAGCAGCAGGTCATGCAAAGTCAAGTTTCGGCTGCGACAGCCATCGTTGC
AGCCGGCTCCTCCCTTTGGGGGGCTTGCCAACAATGTAAGCCAGCGGAAA
TGCAAGAAGAATGGTATGCCTCAGTAAGAGATGCACGAAGAGGGGTTGTT
CGCTTCGTTTGCTTCGCTTTCTGAAGGGTTGTTCTGATTCTAAGGTGAGA
TCGACGTCGGCCATGGTTTAACTGAAAAAATATCACGAAATACCACATAT
TTCGATCAAAA
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protein sequence of NO10G03080.1

>NO10G03080.1-protein ID=NO10G03080.1-protein|Name=NO10G03080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=422bp
MKAAQRLVFRHVGTWYVPLCAGSHASTSARATNRIQVSAAAAVTTTIRPY
PHVWTSPPKPAASSSTLPNTTISHITVTPRPSLTLELTAVAASAQRGPRR
SLSSPSSEISPIAPLSSLLSCSFHPSSSSSYSSSYSSSSSSLSSSSSSSL
SFFSSSSFFPQKRGIMTQAIISSSLRTQRLLSPLLHSLPSSSATCRHFWS
PKFIRQLGLPWFAQVFYGTIFVIGVGVLAVSLFATSTAFAVLFLVAFAGF
KLLNRQPHLMRQVMRRQRPPGAPPSFFGPLIDMMTDGVMLDGLKNARGSI
ERDVLEIINVHPKLGRYGTDFHTTGLHKMSMQVVNGADKHVVMQFLVASS
KPREMFVQVVASRHEEEMGGEREGMERWEYEDVSVQTPDGKVIDLTEELL
KGKTNRRIVIDVAPRHVKEEE*
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Synonyms
Publications