NO10G03080.1, NO10G03080.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G03080.1
Unique NameNO10G03080.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1772
Alignment locationchr10:853126..855936 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:853126..855936 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G03080.1 vs.
Match: EWM25532.1 (hypothetical protein Naga_100032g8 [Nannochloropsis gaditana])

HSP 1 Score: 352.8 bits (904), Expect = 1.400e-93
Identity = 199/291 (68.38%), Postives = 228/291 (78.35%), Query Frame = 0 
Query:  134 SYSSSSSSLSSSSSSSLSFFSSS-SFFPQKRGIMTQAIISSSLR-TQRLLSPLLHSLPSSS-ATCRHFWSPKFIRQLGLPWFAQVFYGTIFVIGVGVLAVSLFATSTAFAVLFLVAFAGFKLLNRQPHLMRQVMRRQRPPGAPPSFFGPLIDMMTDGVMLDGLKNARGSIERDVLEIINVHPKLGRYGTDFHTTGLHKMSMQVVNGADKHVVMQFLVASSKPREMFVQVVASRHEEEMGGEREGMERWEYEDVSVQTPDGKVIDLTEELLKGKTNRRIVIDVAPRHVKEEE 422
            S+  SSS+ +   S   +  S      P  R +MTQA    SLR T   + P + S  S      R+FWSP+F+RQLGLPWFAQVFYGT+FVIGVG LAV+LFATST FAVLFLVAF G+KL NRQP+LMRQVMRRQRP G+PPS FGPL+DMMTDG++ DGLK+ARG+IERDVL IIN HP+L RYGTDF +TGLHKMSMQVVN  +KHVVMQ LVASSKPREMFVQVVASRHEEE  G  +G ERW+YEDVSVQTPDGKVIDLT+EL KGK  RRI+IDV PR VK++E
Sbjct:  118 SFPPSSSAFAPLPSVPATLPSPPFPMLPSCRSVMTQA----SLRDTNARIEPKVPSQSSIQFVPRRNFWSPRFLRQLGLPWFAQVFYGTLFVIGVGALAVTLFATSTVFAVLFLVAFLGYKLFNRQPNLMRQVMRRQRPAGSPPSLFGPLLDMMTDGMLFDGLKSARGAIERDVLGIINSHPQLRRYGTDFRSTGLHKMSMQVVNEGEKHVVMQLLVASSKPREMFVQVVASRHEEEEDGTGDGEERWDYEDVSVQTPDGKVIDLTKELFKGKGGRRIIIDVPPRRVKKDE 404
The following BLAST results are available for this feature:
BLAST of NO10G03080.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25532.11.400e-9368.38hypothetical protein Naga_100032g8 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G03080NO10G03080Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G03080.1NO10G03080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G03080.1.cds1NO10G03080.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G03080.1 ID=NO10G03080.1|Name=NO10G03080.1|organism=Nannochloropsis oceanica|type=mRNA|length=1772bp
CAGGCTAAGGATCAACTCGCTGCTTGTGATGCTTGTCGTGTGAGCCCGCC
TGGAACCTTGCGCCTCTTGCTCTGGCAACCTCAACGGGCACTGCTACCGC
CGCAGCCAGCATCGGCAACACGAAGCAATTTTGAAAACAAGAACACAAGG
GGGGTCACAAAATGAAGGCAGCGCAACGGTTGGTGTTCCGCCACGTCGGC
ACCTGGTATGTCCCCCTCTGTGCAGGAAGCCATGCCAGCACCAGTGCCAG
GGCGACAAATAGGATACAAGTGTCAGCAGCGGCAGCAGTGACGACGACAA
TAAGACCATACCCGCATGTATGGACATCGCCACCCAAGCCCGCTGCTTCT
TCTTCCACCCTTCCCAACACCACCATCAGTCATATCACGGTCACACCCCG
TCCCTCGTTGACTCTGGAGTTGACAGCAGTAGCTGCATCAGCTCAAAGAG
GTCCACGACGATCGCTATCCTCTCCTTCGTCTGAGATCTCGCCAATAGCA
CCGCTTTCCTCACTCCTCTCGTGCTCTTTCCACCCTTCCTCCTCCTCCTC
CTACTCCTCCTCCTACTCCTCCTCCTCCTCCTCCTTATCCTCCTCCTCCT
CCTCCTCCTTATCCTTCTTCTCCTCCTCCTCTTTTTTCCCACAAAAACGA
GGAATCATGACGCAAGCCATTATCTCCTCCTCCCTTCGCACACAACGTCT
CCTCTCGCCCCTCCTCCACTCCCTTCCCTCTTCTTCTGCGACATGCCGTC
ATTTTTGGTCCCCGAAATTCATTCGCCAGTTGGGCTTACCCTGGTTTGCT
CAAGTATTCTATGGAACGATTTTTGTGATTGGAGTTGGTGTATTAGCGGT
CTCCCTCTTCGCGACTTCAACGGCATTTGCTGTCTTGTTTTTGGTGGCGT
TTGCCGGGTTTAAACTTTTGAATCGGCAACCGCATTTGATGCGGCAGGTG
ATGCGGAGACAGAGGCCTCCAGGGGCACCGCCATCGTTCTTTGGGCCGTT
GATTGACATGATGACGGACGGTGTGATGTTGGATGGGTTGAAGAATGCGC
GCGGTTCGATCGAACGCGACGTGTTGGAGATTATTAATGTGCACCCGAAG
TTGGGGAGATACGGGACGGATTTTCATACGACGGGTTTGCATAAGATGAG
TATGCAGGTGGTGAATGGAGCAGACAAGCATGTTGTGATGCAATTTTTGG
TGGCCTCGAGTAAACCAAGGGAGATGTTTGTTCAGGTGGTGGCGAGTCGG
CATGAAGAGGAGATGGGAGGGGAACGAGAGGGGATGGAGAGGTGGGAATA
CGAGGACGTGTCTGTGCAGACGCCCGACGGAAAGGTCATCGATTTGACGG
AGGAACTGCTCAAGGGCAAGACAAATAGGCGAATCGTCATTGACGTGGCT
CCAAGGCATGTTAAAGAGGAAGAGTAGAGGCCTTCCAACCAAGACTCGTT
TGACTGGCATGGAGGTGGCGGACACCAGGACCCGCACCACCTTTACTTCC
ACCACCACTACCAGCAGCAGGTCATGCAAAGTCAAGTTTCGGCTGCGACA
GCCATCGTTGCAGCCGGCTCCTCCCTTTGGGGGGCTTGCCAACAATGTAA
GCCAGCGGAAATGCAAGAAGAATGGTATGCCTCAGTAAGAGATGCACGAA
GAGGGGTTGTTCGCTTCGTTTGCTTCGCTTTCTGAAGGGTTGTTCTGATT
CTAAGGTGAGATCGACGTCGGCCATGGTTTAACTGAAAAAATATCACGAA
ATACCACATATTTCGATCAAAA
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protein sequence of NO10G03080.1

>NO10G03080.1-protein ID=NO10G03080.1-protein|Name=NO10G03080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=422bp
MKAAQRLVFRHVGTWYVPLCAGSHASTSARATNRIQVSAAAAVTTTIRPY
PHVWTSPPKPAASSSTLPNTTISHITVTPRPSLTLELTAVAASAQRGPRR
SLSSPSSEISPIAPLSSLLSCSFHPSSSSSYSSSYSSSSSSLSSSSSSSL
SFFSSSSFFPQKRGIMTQAIISSSLRTQRLLSPLLHSLPSSSATCRHFWS
PKFIRQLGLPWFAQVFYGTIFVIGVGVLAVSLFATSTAFAVLFLVAFAGF
KLLNRQPHLMRQVMRRQRPPGAPPSFFGPLIDMMTDGVMLDGLKNARGSI
ERDVLEIINVHPKLGRYGTDFHTTGLHKMSMQVVNGADKHVVMQFLVASS
KPREMFVQVVASRHEEEMGGEREGMERWEYEDVSVQTPDGKVIDLTEELL
KGKTNRRIVIDVAPRHVKEEE*
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mRNA from alignment at chr10:853126..855936+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G03080.1 ID=NO10G03080.1|Name=NO10G03080.1|organism=Nannochloropsis oceanica|type=mRNA|length=2811bp|location=Sequence derived from alignment at chr10:853126..855936+ (Nannochloropsis oceanica)
CAGGCTAAGGATCAACTCGCTGCTTGTGATGCTTGTCGTGTGAGCCCGCC
TGGAACCTTGCGCCTCTTGCTCTGGCAACCTCAACGGGCACTGCTACCGC
CGCAGCCAGCATCGGCAACACGAAGTAAGTCAGTCCGAACACAAGTTTCG
CAATTGATCGAACGCCCTAGGCTCTTGCACGCCGCATATCTCTACCCCTC
TCCTCAGAATAGTGGTGATGTTTTGTGTTTTGTCTTTTTCCAAATGATTA
GAAACTTGTCGTGACTGCGTCCAGGGTGGGTTGCCATAGCGTGTTGTGCC
TTGACCGGCGGCACGAACGCTCCTGATACTCGATGCCATTTATGAGTCCA
CGAAATGTGCATTGTAAAGGCGGGAGTAGAGCACAGATACCTTTTAGTAC
TTCGCTTTCATCTTTTGCGCCTGCCTCCCTTTTCAGTGTCCTTGTGGCCG
AAGGAGGGTATGCGTGGGGAGGGAGAGAGGGAGGGAGGGAGAACCCTGTC
TTATATTTTATGGTGGGCAGCTGTGAGATGTTTGGCTGCTTTATAAAGGC
AGACAGGACACTGCTTGTCTTCGTGACAAGAAGAAACTCAATTCAAGACG
AATAGGTCGGAGGGGCAAGTGTGTGTCGTTGGTCTTGTGACTGGCGAGAC
ATGCATGTCCTGTTCCCGTGGAAGAGAGCTGCGCCTTCCTTCTGGGGGTA
AGGCGCCCATCTACTTTCCTCCACGTTTTAGCACGACCCAGACGCGACGG
TCATGCGAGAGAAGAAGGCTTCTTTTTGCCTCGCTTTGGGGATTTGTGTG
TATGTATGCATGTGGTCCTCTTCCCAAACGAGGAAGGAGTCAACTCTCTT
TTTAATACGTTTTTTCCTTTTTTGAGGGAAACGCGCGACCGGATAATGCA
CTCATGCCCGACGCGGATATGTGCGAAAGGTTTCTCTCGCGACAACTCTT
TCCAAGTTTGATCCTTCCGCCACATGAGCACATCATTCTAGTAAGCTGAT
GGTAAAAGACGCACATACAACGAGACACGATGACAAGGAGCGGGAGGAGC
AGAAAGGCGAGAGGAAGAGAGAAATTCTCTGACTATATATTCACTGGTGT
CAATATCATTTATTTTCATGGCCCCTTTCTTTCAAACAACCAAAAACGAA
ACAAACCATGCAGGCAATTTTGAAAACAAGAACACAAGGGGGGTCACAAA
ATGAAGGCAGCGCAACGGTTGGTGTTCCGCCACGTCGGCACCTGGTATGT
CCCCCTCTGTGCAGGAAGCCATGCCAGCACCAGTGCCAGGGCGACAAATA
GGATACAAGTGTCAGCAGCGGCAGCAGTGACGACGACAATAAGACCATAC
CCGCATGTATGGACATCGCCACCCAAGCCCGCTGCTTCTTCTTCCACCCT
TCCCAACACCACCATCAGTCATATCACGGTCACACCCCGTCCCTCGTTGA
CTCTGGAGTTGACAGCAGTAGCTGCATCAGCTCAAAGAGGTCCACGACGA
TCGCTATCCTCTCCTTCGTCTGAGATCTCGCCAATAGCACCGCTTTCCTC
ACTCCTCTCGTGCTCTTTCCACCCTTCCTCCTCCTCCTCCTACTCCTCCT
CCTACTCCTCCTCCTCCTCCTCCTTATCCTCCTCCTCCTCCTCCTCCTTA
TCCTTCTTCTCCTCCTCCTCTTTTTTCCCACAAAAACGAGGAATCATGAC
GCAAGCCATTATCTCCTCCTCCCTTCGCACACAACGTCTCCTCTCGCCCC
TCCTCCACTCCCTTCCCTCTTCTTCTGCGACATGCCGTCATTTTTGGTCC
CCGAAATTCATTCGCCAGTTGGGCTTACCCTGGTTTGCTCAAGTATTCTA
TGGAACGATTTTTGTGATTGGAGTTGGTGTATTAGCGGTCTCCCTCTTCG
CGACTTCAACGGCATTTGCTGTCTTGTTTTTGGTGGCGTTTGCCGGGTTT
AAACTTTTGAATCGGCAACCGCATTTGATGCGGCAGGTGATGCGGAGACA
GAGGCCTCCAGGGGCACCGCCATCGTTCTTTGGGCCGTTGATTGACATGA
TGACGGACGGTGTGATGTTGGATGGGTTGAAGAATGCGCGCGGTTCGATC
GAACGCGACGTGTTGGAGATTATTAATGTGCACCCGAAGTTGGGGAGATA
CGGGACGGATTTTCATACGACGGGTTTGCATAAGATGAGTATGCAGGTGG
TGAATGGAGCAGACAAGCATGTTGTGATGCAATTTTTGGTGGCCTCGAGT
AAACCAAGGGAGATGTTTGTTCAGGTGGTGGCGAGTCGGCATGAAGAGGA
GATGGGAGGGGAACGAGAGGGGATGGAGAGGTGGGAATACGAGGACGTGT
CTGTGCAGACGCCCGACGGAAAGGTCATCGATTTGACGGAGGAACTGCTC
AAGGGCAAGACAAATAGGCGAATCGTCATTGACGTGGCTCCAAGGCATGT
TAAAGAGGAAGAGTAGAGGCCTTCCAACCAAGACTCGTTTGACTGGCATG
GAGGTGGCGGACACCAGGACCCGCACCACCTTTACTTCCACCACCACTAC
CAGCAGCAGGTCATGCAAAGTCAAGTTTCGGCTGCGACAGCCATCGTTGC
AGCCGGCTCCTCCCTTTGGGGGGCTTGCCAACAATGTAAGCCAGCGGAAA
TGCAAGAAGAATGGTATGCCTCAGTAAGAGATGCACGAAGAGGGGTTGTT
CGCTTCGTTTGCTTCGCTTTCTGAAGGGTTGTTCTGATTCTAAGGTGAGA
TCGACGTCGGCCATGGTTTAACTGAAAAAATATCACGAAATACCACATAT
TTCGATCAAAA
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Coding sequence (CDS) from alignment at chr10:853126..855936+

>NO10G03080.1 ID=NO10G03080.1|Name=NO10G03080.1|organism=Nannochloropsis oceanica|type=CDS|length=1266bp|location=Sequence derived from alignment at chr10:853126..855936+ (Nannochloropsis oceanica)
ATGAAGGCAGCGCAACGGTTGGTGTTCCGCCACGTCGGCACCTGGTATGT
CCCCCTCTGTGCAGGAAGCCATGCCAGCACCAGTGCCAGGGCGACAAATA
GGATACAAGTGTCAGCAGCGGCAGCAGTGACGACGACAATAAGACCATAC
CCGCATGTATGGACATCGCCACCCAAGCCCGCTGCTTCTTCTTCCACCCT
TCCCAACACCACCATCAGTCATATCACGGTCACACCCCGTCCCTCGTTGA
CTCTGGAGTTGACAGCAGTAGCTGCATCAGCTCAAAGAGGTCCACGACGA
TCGCTATCCTCTCCTTCGTCTGAGATCTCGCCAATAGCACCGCTTTCCTC
ACTCCTCTCGTGCTCTTTCCACCCTTCCTCCTCCTCCTCCTACTCCTCCT
CCTACTCCTCCTCCTCCTCCTCCTTATCCTCCTCCTCCTCCTCCTCCTTA
TCCTTCTTCTCCTCCTCCTCTTTTTTCCCACAAAAACGAGGAATCATGAC
GCAAGCCATTATCTCCTCCTCCCTTCGCACACAACGTCTCCTCTCGCCCC
TCCTCCACTCCCTTCCCTCTTCTTCTGCGACATGCCGTCATTTTTGGTCC
CCGAAATTCATTCGCCAGTTGGGCTTACCCTGGTTTGCTCAAGTATTCTA
TGGAACGATTTTTGTGATTGGAGTTGGTGTATTAGCGGTCTCCCTCTTCG
CGACTTCAACGGCATTTGCTGTCTTGTTTTTGGTGGCGTTTGCCGGGTTT
AAACTTTTGAATCGGCAACCGCATTTGATGCGGCAGGTGATGCGGAGACA
GAGGCCTCCAGGGGCACCGCCATCGTTCTTTGGGCCGTTGATTGACATGA
TGACGGACGGTGTGATGTTGGATGGGTTGAAGAATGCGCGCGGTTCGATC
GAACGCGACGTGTTGGAGATTATTAATGTGCACCCGAAGTTGGGGAGATA
CGGGACGGATTTTCATACGACGGGTTTGCATAAGATGAGTATGCAGGTGG
TGAATGGAGCAGACAAGCATGTTGTGATGCAATTTTTGGTGGCCTCGAGT
AAACCAAGGGAGATGTTTGTTCAGGTGGTGGCGAGTCGGCATGAAGAGGA
GATGGGAGGGGAACGAGAGGGGATGGAGAGGTGGGAATACGAGGACGTGT
CTGTGCAGACGCCCGACGGAAAGGTCATCGATTTGACGGAGGAACTGCTC
AAGGGCAAGACAAATAGGCGAATCGTCATTGACGTGGCTCCAAGGCATGT
TAAAGAGGAAGAGTAG
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Synonyms
Publications