NO10G03040, NO10G03040 (gene) Nannochloropsis oceanica

Overview
NameNO10G03040
Unique NameNO10G03040
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2008
Alignment locationchr10:844222..846229 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:844222..846229 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO10G03040 vs. NCBI_GenBank
Match: EWM25528.1 (hypothetical protein Naga_100032g16 [Nannochloropsis gaditana])

HSP 1 Score: 264.2 bits (674), Expect = 5.600e-67
Identity = 124/224 (55.36%), Postives = 156/224 (69.64%), Query Frame = 0 
Query:   67 DARMLSSYLKYAKGNLGEAMGRYEEFLAWRTALGPVGVTSIEQNLRADGTGKGPFMITLEYDEEERGKHTPIILMQGMIKGTRQEMTNQVVYAAERAGALMPCDGPARVKFLVNTRGGGFRVPDADYRAVVFEVLHRFYPWLENCHVIFLDPIYVVRIGLWGMGKVFGLKWKEQFKVASREGWPEGVDDEDIRTYVRVTKEEHGIGWEKDGSLKFDMEGYIERR 291
            D R+LSS+L+ AK +L +A+  YE FLAWR+ALGPV + S+E NLRA+  GKGPFM+TLEY+ EE GKH PII+MQGMIKGTR EM  Q                           GGGFR+PDADYRA VF+VLH++YPW+E+  VIFLDP+YVV++ LWGMGK+FG  WKE+F V S+  WPEGV D D+  Y+  T     +GWE DG++++DME YIERR
Sbjct:   20 DLRVLSSHLRLAKDDLDDAIRHYEGFLAWRSALGPVSIASVEDNLRAN-NGKGPFMLTLEYEPEEAGKHPPIIMMQGMIKGTRAEMVKQ---------------------------GGGFRMPDADYRAAVFDVLHQYYPWMESSQVIFLDPLYVVKMALWGMGKIFGPSWKEKFVVGSKAAWPEGVKDPDVEKYMETTPGGRALGWEADGTIRYDMEEYIERR 215
The following BLAST results are available for this feature:
BLAST of NO10G03040 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25528.15.600e-6755.36hypothetical protein Naga_100032g16 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001178NSK001178Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G03040.1NO10G03040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585762gene_3900Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100032g16gene4984Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G03040.1NO10G03040.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G03040 ID=NO10G03040|Name=NO10G03040|organism=Nannochloropsis oceanica|type=gene|length=2008bp
ACAGGGATCGCCAATCCGCTCACCAGAATCACTCGCGATTCGTCGCGATG
GCCAGCCCCTTTGACACTGCCACCGCTTTCCCCCCATCTCCCAGCACTAA
CAACGACGCCGATGACGCTGGGGACAGCAAAACCGCCACGGCCACCCCAA
GGGCGGACAACACAGCCACCATCGCGACGAATATTGCGGCCCTTACTGAA
GGCCAGGCGAAGTTAGCGGCAATGCAAGCCCGCTGGCCCTCCGTGGACGC
CCGGATGCTTTCTTCTTACCTCAAGTACGCAAAAGGCAACCTGGGGGAGG
CCATGGGACGCTACGAGGAGTTTTTGGCCTGGCGCACAGCCTTGGGACCA
GTGGGGGTCACGTCGATTGAGCAGAACCTGCGGGCAGATGGGACGGGAAA
AGGCCCGTTCATGATCACATTGGAGTACGATGAGGAGGAGAGGGGAAAAC
ACACGCCCATCATTTTGATGCAAGGGATGATAAAgtaagaaggaaggaga
gtagtgaaatatggcgaaggtggaaactatcgctaccactcaagcatgaa
cgaaaggatgacctatagccgaatcacctcctttacctccctccctccct
ccctccctccctccctcgctctctccctccctccctccctccctccctcc
ctcgctctctccctccctccctccctccctaaaaatcacagAGGCACCCG
CCAAGAAATGACGAATCAAGTCGTCTACGCCGCCGAGCGTGCCGGAGCTT
TGATGCCTTGCGACGGTCCCGCGCGCGTCAAATTTCTGGTGAACACCCGG
GGGGGGGGGTTCCGTGTCCCAGACGCTGATTATCGAGCCGTAGTCTTTGA
AGTGCTTCACCGCTTTTACCCTTGGCTGGAGAATTGCCATgtaggttctt
tttcatttagttcgttcatctttgtctaatatatcgtcaaaatcaacatt
tcgacgcatgcccaccaaccataccctcactcccatcttttccgccctcc
gcccttcttttacccgccgccttccattagGTGATATTCCTGGATCCTAT
ATATGTGGTCAGAATCGGGTTATGGGGAATGGGGAAGGTGTTTGGACTCA
AGTGGAAGGAGCAGTTTAAGGTGGCCTCGAGGGAGGGCTGGCCGGAGGGG
GTGGACGATGAAGATATCCGGACATATGTGCGGGTGACGAAGGAGGAGCA
CGGCATTGGATGGGAGAAAGATGGCAGCTTGAAATTTGATATGGAAGGAT
ACATTGAGAGAAGGGGGAGGGAGGAAGCAAAGGAAAAAGAGGAAGAGGAG
GAAAGGTGGAGGAAGGCGGAGCTGTTGGAGGGGGAAAAGGAGCAGGCAGT
GGCAAGTGCGGCGGCTCAGAGTGCGAACATGATGGCACTGCAAATGGACC
AAGGGGCGGGGCTCTTGGGACTTGGATTGTCGTAGGAAAGGAGGGCGTAG
AGGAGAGGGAGAGAAGGAGAAGCCGGGGGAAAAAAAGGAGTGGGGGAAGA
AGAAGGTAGTACGACATGGGGCAAGCGTAGGGGAGGGAAAGTCATTCACT
ATGAACCAACGGATTCAAATCAAAGGGGAGGGAAGTCGATGGTGCCTGTG
AGATAGCAAAGGGGGGAATATGGCTATCATTACCATGCAGACATATTAAA
TTGTCCCGCTTTATGTATACGAAGATGGAATTTGATTTTTTTACTTGCAT
CCTTCCAATTTGATGTGTTGACGAGCCAGTGTATGGAGTGAAGAAAAAAG
AAGGATTACGGGAGCACGCGGTGTTGGCAAGCTTCACACAGGCCCGTCGG
TCCTTATCTTGTGTAGGGAAATGCATGGTCGAAGCCACGATCAACTCCAG
GTGACACTAAAAAAAAGACAGGAAAATTGTGGAGGCCGCCTATTCGGTAT
CCCTCACTCTTTCAGACGCGTCCCTTCGGTCCAGGGATGGATATAAGTGT
AGATAAGGATAAACATTAAATAAAAATAACAAAAGCAATGGTTGGTAAGA
AAAGAGCC
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protein sequence of NO10G03040.1

>NO10G03040.1-protein ID=NO10G03040.1-protein|Name=NO10G03040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=347bp
MASPFDTATAFPPSPSTNNDADDAGDSKTATATPRADNTATIATNIAALT
EGQAKLAAMQARWPSVDARMLSSYLKYAKGNLGEAMGRYEEFLAWRTALG
PVGVTSIEQNLRADGTGKGPFMITLEYDEEERGKHTPIILMQGMIKGTRQ
EMTNQVVYAAERAGALMPCDGPARVKFLVNTRGGGFRVPDADYRAVVFEV
LHRFYPWLENCHVIFLDPIYVVRIGLWGMGKVFGLKWKEQFKVASREGWP
EGVDDEDIRTYVRVTKEEHGIGWEKDGSLKFDMEGYIERRGREEAKEKEE
EEERWRKAELLEGEKEQAVASAAAQSANMMALQMDQGAGLLGLGLS*
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Synonyms
Publications