NO10G03040.1, NO10G03040.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G03040.1
Unique NameNO10G03040.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1661
Alignment locationchr10:844222..846229 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:844222..846229 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G03040.1 vs.
Match: EWM25528.1 (hypothetical protein Naga_100032g16 [Nannochloropsis gaditana])

HSP 1 Score: 281.2 bits (718), Expect = 4.400e-72
Identity = 133/235 (56.60%), Postives = 166/235 (70.64%), Query Frame = 0 
Query:   56 LAAMQARWPSVDARMLSSYLKYAKGNLGEAMGRYEEFLAWRTALGPVGVTSIEQNLRADGTGKGPFMITLEYDEEERGKHTPIILMQGMIKGTRQEMTNQVVYAAERAGALMPCDGPARVKFLVNTRGGGFRVPDADYRAVVFEVLHRFYPWLENCHVIFLDPIYVVRIGLWGMGKVFGLKWKEQFKVASREGWPEGVDDEDIRTYVRVTKEEHGIGWEKDGSLKFDMEGYIERR 291
            LAAMQ+RWP VD R+LSS+L+ AK +L +A+  YE FLAWR+ALGPV + S+E NLRA+  GKGPFM+TLEY+ EE GKH PII+MQGMIKGTR EM  Q                           GGGFR+PDADYRA VF+VLH++YPW+E+  VIFLDP+YVV++ LWGMGK+FG  WKE+F V S+  WPEGV D D+  Y+  T     +GWE DG++++DME YIERR
Sbjct:    9 LAAMQSRWPEVDLRVLSSHLRLAKDDLDDAIRHYEGFLAWRSALGPVSIASVEDNLRANN-GKGPFMLTLEYEPEEAGKHPPIIMMQGMIKGTRAEMVKQ---------------------------GGGFRMPDADYRAAVFDVLHQYYPWMESSQVIFLDPLYVVKMALWGMGKIFGPSWKEKFVVGSKAAWPEGVKDPDVEKYMETTPGGRALGWEADGTIRYDMEEYIERR 215
The following BLAST results are available for this feature:
BLAST of NO10G03040.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25528.14.400e-7256.60hypothetical protein Naga_100032g16 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G03040NO10G03040Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G03040.1NO10G03040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G03040.1.cds1NO10G03040.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G03040.1.cds2NO10G03040.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G03040.1.cds3NO10G03040.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G03040.1 ID=NO10G03040.1|Name=NO10G03040.1|organism=Nannochloropsis oceanica|type=mRNA|length=1661bp
ACAGGGATCGCCAATCCGCTCACCAGAATCACTCGCGATTCGTCGCGATG
GCCAGCCCCTTTGACACTGCCACCGCTTTCCCCCCATCTCCCAGCACTAA
CAACGACGCCGATGACGCTGGGGACAGCAAAACCGCCACGGCCACCCCAA
GGGCGGACAACACAGCCACCATCGCGACGAATATTGCGGCCCTTACTGAA
GGCCAGGCGAAGTTAGCGGCAATGCAAGCCCGCTGGCCCTCCGTGGACGC
CCGGATGCTTTCTTCTTACCTCAAGTACGCAAAAGGCAACCTGGGGGAGG
CCATGGGACGCTACGAGGAGTTTTTGGCCTGGCGCACAGCCTTGGGACCA
GTGGGGGTCACGTCGATTGAGCAGAACCTGCGGGCAGATGGGACGGGAAA
AGGCCCGTTCATGATCACATTGGAGTACGATGAGGAGGAGAGGGGAAAAC
ACACGCCCATCATTTTGATGCAAGGGATGATAAAAGGCACCCGCCAAGAA
ATGACGAATCAAGTCGTCTACGCCGCCGAGCGTGCCGGAGCTTTGATGCC
TTGCGACGGTCCCGCGCGCGTCAAATTTCTGGTGAACACCCGGGGGGGGG
GGTTCCGTGTCCCAGACGCTGATTATCGAGCCGTAGTCTTTGAAGTGCTT
CACCGCTTTTACCCTTGGCTGGAGAATTGCCATGTGATATTCCTGGATCC
TATATATGTGGTCAGAATCGGGTTATGGGGAATGGGGAAGGTGTTTGGAC
TCAAGTGGAAGGAGCAGTTTAAGGTGGCCTCGAGGGAGGGCTGGCCGGAG
GGGGTGGACGATGAAGATATCCGGACATATGTGCGGGTGACGAAGGAGGA
GCACGGCATTGGATGGGAGAAAGATGGCAGCTTGAAATTTGATATGGAAG
GATACATTGAGAGAAGGGGGAGGGAGGAAGCAAAGGAAAAAGAGGAAGAG
GAGGAAAGGTGGAGGAAGGCGGAGCTGTTGGAGGGGGAAAAGGAGCAGGC
AGTGGCAAGTGCGGCGGCTCAGAGTGCGAACATGATGGCACTGCAAATGG
ACCAAGGGGCGGGGCTCTTGGGACTTGGATTGTCGTAGGAAAGGAGGGCG
TAGAGGAGAGGGAGAGAAGGAGAAGCCGGGGGAAAAAAAGGAGTGGGGGA
AGAAGAAGGTAGTACGACATGGGGCAAGCGTAGGGGAGGGAAAGTCATTC
ACTATGAACCAACGGATTCAAATCAAAGGGGAGGGAAGTCGATGGTGCCT
GTGAGATAGCAAAGGGGGGAATATGGCTATCATTACCATGCAGACATATT
AAATTGTCCCGCTTTATGTATACGAAGATGGAATTTGATTTTTTTACTTG
CATCCTTCCAATTTGATGTGTTGACGAGCCAGTGTATGGAGTGAAGAAAA
AAGAAGGATTACGGGAGCACGCGGTGTTGGCAAGCTTCACACAGGCCCGT
CGGTCCTTATCTTGTGTAGGGAAATGCATGGTCGAAGCCACGATCAACTC
CAGGTGACACTAAAAAAAAGACAGGAAAATTGTGGAGGCCGCCTATTCGG
TATCCCTCACTCTTTCAGACGCGTCCCTTCGGTCCAGGGATGGATATAAG
TGTAGATAAGGATAAACATTAAATAAAAATAACAAAAGCAATGGTTGGTA
AGAAAAGAGCC
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protein sequence of NO10G03040.1

>NO10G03040.1-protein ID=NO10G03040.1-protein|Name=NO10G03040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=347bp
MASPFDTATAFPPSPSTNNDADDAGDSKTATATPRADNTATIATNIAALT
EGQAKLAAMQARWPSVDARMLSSYLKYAKGNLGEAMGRYEEFLAWRTALG
PVGVTSIEQNLRADGTGKGPFMITLEYDEEERGKHTPIILMQGMIKGTRQ
EMTNQVVYAAERAGALMPCDGPARVKFLVNTRGGGFRVPDADYRAVVFEV
LHRFYPWLENCHVIFLDPIYVVRIGLWGMGKVFGLKWKEQFKVASREGWP
EGVDDEDIRTYVRVTKEEHGIGWEKDGSLKFDMEGYIERRGREEAKEKEE
EEERWRKAELLEGEKEQAVASAAAQSANMMALQMDQGAGLLGLGLS*
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mRNA from alignment at chr10:844222..846229+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G03040.1 ID=NO10G03040.1|Name=NO10G03040.1|organism=Nannochloropsis oceanica|type=mRNA|length=2008bp|location=Sequence derived from alignment at chr10:844222..846229+ (Nannochloropsis oceanica)
ACAGGGATCGCCAATCCGCTCACCAGAATCACTCGCGATTCGTCGCGATG
GCCAGCCCCTTTGACACTGCCACCGCTTTCCCCCCATCTCCCAGCACTAA
CAACGACGCCGATGACGCTGGGGACAGCAAAACCGCCACGGCCACCCCAA
GGGCGGACAACACAGCCACCATCGCGACGAATATTGCGGCCCTTACTGAA
GGCCAGGCGAAGTTAGCGGCAATGCAAGCCCGCTGGCCCTCCGTGGACGC
CCGGATGCTTTCTTCTTACCTCAAGTACGCAAAAGGCAACCTGGGGGAGG
CCATGGGACGCTACGAGGAGTTTTTGGCCTGGCGCACAGCCTTGGGACCA
GTGGGGGTCACGTCGATTGAGCAGAACCTGCGGGCAGATGGGACGGGAAA
AGGCCCGTTCATGATCACATTGGAGTACGATGAGGAGGAGAGGGGAAAAC
ACACGCCCATCATTTTGATGCAAGGGATGATAAAGTAAGAAGGAAGGAGA
GTAGTGAAATATGGCGAAGGTGGAAACTATCGCTACCACTCAAGCATGAA
CGAAAGGATGACCTATAGCCGAATCACCTCCTTTACCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCGCTCTCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCGCTCTCTCCCTCCCTCCCTCCCTCCCTAAAAATCACAGAGGCACCCG
CCAAGAAATGACGAATCAAGTCGTCTACGCCGCCGAGCGTGCCGGAGCTT
TGATGCCTTGCGACGGTCCCGCGCGCGTCAAATTTCTGGTGAACACCCGG
GGGGGGGGGTTCCGTGTCCCAGACGCTGATTATCGAGCCGTAGTCTTTGA
AGTGCTTCACCGCTTTTACCCTTGGCTGGAGAATTGCCATGTAGGTTCTT
TTTCATTTAGTTCGTTCATCTTTGTCTAATATATCGTCAAAATCAACATT
TCGACGCATGCCCACCAACCATACCCTCACTCCCATCTTTTCCGCCCTCC
GCCCTTCTTTTACCCGCCGCCTTCCATTAGGTGATATTCCTGGATCCTAT
ATATGTGGTCAGAATCGGGTTATGGGGAATGGGGAAGGTGTTTGGACTCA
AGTGGAAGGAGCAGTTTAAGGTGGCCTCGAGGGAGGGCTGGCCGGAGGGG
GTGGACGATGAAGATATCCGGACATATGTGCGGGTGACGAAGGAGGAGCA
CGGCATTGGATGGGAGAAAGATGGCAGCTTGAAATTTGATATGGAAGGAT
ACATTGAGAGAAGGGGGAGGGAGGAAGCAAAGGAAAAAGAGGAAGAGGAG
GAAAGGTGGAGGAAGGCGGAGCTGTTGGAGGGGGAAAAGGAGCAGGCAGT
GGCAAGTGCGGCGGCTCAGAGTGCGAACATGATGGCACTGCAAATGGACC
AAGGGGCGGGGCTCTTGGGACTTGGATTGTCGTAGGAAAGGAGGGCGTAG
AGGAGAGGGAGAGAAGGAGAAGCCGGGGGAAAAAAAGGAGTGGGGGAAGA
AGAAGGTAGTACGACATGGGGCAAGCGTAGGGGAGGGAAAGTCATTCACT
ATGAACCAACGGATTCAAATCAAAGGGGAGGGAAGTCGATGGTGCCTGTG
AGATAGCAAAGGGGGGAATATGGCTATCATTACCATGCAGACATATTAAA
TTGTCCCGCTTTATGTATACGAAGATGGAATTTGATTTTTTTACTTGCAT
CCTTCCAATTTGATGTGTTGACGAGCCAGTGTATGGAGTGAAGAAAAAAG
AAGGATTACGGGAGCACGCGGTGTTGGCAAGCTTCACACAGGCCCGTCGG
TCCTTATCTTGTGTAGGGAAATGCATGGTCGAAGCCACGATCAACTCCAG
GTGACACTAAAAAAAAGACAGGAAAATTGTGGAGGCCGCCTATTCGGTAT
CCCTCACTCTTTCAGACGCGTCCCTTCGGTCCAGGGATGGATATAAGTGT
AGATAAGGATAAACATTAAATAAAAATAACAAAAGCAATGGTTGGTAAGA
AAAGAGCC
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Coding sequence (CDS) from alignment at chr10:844222..846229+

>NO10G03040.1 ID=NO10G03040.1|Name=NO10G03040.1|organism=Nannochloropsis oceanica|type=CDS|length=1041bp|location=Sequence derived from alignment at chr10:844222..846229+ (Nannochloropsis oceanica)
ATGGCCAGCCCCTTTGACACTGCCACCGCTTTCCCCCCATCTCCCAGCAC
TAACAACGACGCCGATGACGCTGGGGACAGCAAAACCGCCACGGCCACCC
CAAGGGCGGACAACACAGCCACCATCGCGACGAATATTGCGGCCCTTACT
GAAGGCCAGGCGAAGTTAGCGGCAATGCAAGCCCGCTGGCCCTCCGTGGA
CGCCCGGATGCTTTCTTCTTACCTCAAGTACGCAAAAGGCAACCTGGGGG
AGGCCATGGGACGCTACGAGGAGTTTTTGGCCTGGCGCACAGCCTTGGGA
CCAGTGGGGGTCACGTCGATTGAGCAGAACCTGCGGGCAGATGGGACGGG
AAAAGGCCCGTTCATGATCACATTGGAGTACGATGAGGAGGAGAGGGGAA
AACACACGCCCATCATTTTGATGCAAGGGATGATAAAAGGCACCCGCCAA
GAAATGACGAATCAAGTCGTCTACGCCGCCGAGCGTGCCGGAGCTTTGAT
GCCTTGCGACGGTCCCGCGCGCGTCAAATTTCTGGTGAACACCCGGGGGG
GGGGGTTCCGTGTCCCAGACGCTGATTATCGAGCCGTAGTCTTTGAAGTG
CTTCACCGCTTTTACCCTTGGCTGGAGAATTGCCATGTGATATTCCTGGA
TCCTATATATGTGGTCAGAATCGGGTTATGGGGAATGGGGAAGGTGTTTG
GACTCAAGTGGAAGGAGCAGTTTAAGGTGGCCTCGAGGGAGGGCTGGCCG
GAGGGGGTGGACGATGAAGATATCCGGACATATGTGCGGGTGACGAAGGA
GGAGCACGGCATTGGATGGGAGAAAGATGGCAGCTTGAAATTTGATATGG
AAGGATACATTGAGAGAAGGGGGAGGGAGGAAGCAAAGGAAAAAGAGGAA
GAGGAGGAAAGGTGGAGGAAGGCGGAGCTGTTGGAGGGGGAAAAGGAGCA
GGCAGTGGCAAGTGCGGCGGCTCAGAGTGCGAACATGATGGCACTGCAAA
TGGACCAAGGGGCGGGGCTCTTGGGACTTGGATTGTCGTAG
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Synonyms
Publications