NO10G02980, NO10G02980 (gene) Nannochloropsis oceanica

Overview
NameNO10G02980
Unique NameNO10G02980
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2624
Alignment locationchr10:826300..828923 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:826300..828923 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
The following BLAST results are available for this feature:
BLAST of NO10G02980 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001173NSK001173Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G02980.1NO10G02980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO10G02980.2NO10G02980.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585792gene_3905Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100032g20gene4988Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G02980.1NO10G02980.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO10G02980.2NO10G02980.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G02980 ID=NO10G02980|Name=NO10G02980|organism=Nannochloropsis oceanica|type=gene|length=2624bp
ATGCGCGGTGTCATGTCCCGCCGGGGTGCAGTCACCCTCCTCGTCATGTG
CCTGTCATGGCTTCCGGGCCCGCTCCATGCCACCAGAGGAgtaagttagc
tctcagaaagataatgcgcatccacaacgtttcatccacacatctctatt
cccttgactccattttcatgcaatatgcataaaacaaacagGCGACGCCG
GCCGAGGTCGAGCCATACCATGTCACCAGCGGCAGCAGCAGCGCCGGAAG
CTTAAGCCGACTCTTGGACTATGACTTACCTTTGCCCCATGATTGGATAC
ATAATgtaagagatacctccgacaatggagaaggggagagagcaattggc
gtgtttgggacgcactttggacctacttgtctaccgtgtccggctctgag
ggagggggagatgaggacggatggaggtttcacgtaactagagggcggac
gatgcattcacctgcagtttatttgatcacacaatttttccactactatg
taacccaatgcacagTCTCAGATGGACATTAATGCGCTGTCCTTTTCGTA
TTCCTACTCCTACTCCTTTGCCAAGACACCTGAGCCGAGCGAAACGGCCA
GTCGCACGgtatgagtcgtcgaccacatgagcgagaattatcgctattgc
ttcatcttgtcatcactcgtgaagcgtatataattatgttggtggcggtc
ttcctctactctactacatatgtgtaccttaaacagGCGACGCCGGCCGA
GGTCGAGCCATACCATGTCACCAGCGGCAGCAGCAGCGCCGGAAGCTTAA
GCCGACTCTTGGACTATGACTTACCTTTGCCCCATGATTGGATACATAAT
gtaagagatacccccgacaatggagaaggggagagagcaattggcgtgtt
tgggacgcactttggacctacttgtctaccgtgtccggctctgagggagg
gggagatgaggacggatggaggtttcacgtaactagagggcggacgatgc
attcacctgcagtttatttgatcacacaatttttccactactatgtaacc
caatgcacagTCTCAGATGGACATTAATGCGCTGTCCTTTTCGTATTCCT
ACTCCTACTCCTTTGCCAAGACACCTGAGCCGAGCGAAACGGCCAGTCGC
ACGgtatgagtcgtcgaccacatgagcgagaattatcgctattgcttcat
cttgtcatcactcgtgaagcgtatataattatgttggtggcggtcctgct
tcattttcgtgctgctctcattctctcttatcacaattatccttctcccc
ttccaatcagACGACCTCGGTGGTGGCCGCCACGGCACAAGACACTCCGA
GACACCCATCTCAATCCGGTGAGATTCCTATTGTGACCATGGTGCTCCTC
ATGGCGGGTTCCCCCGAAGAACAGAAGGAGGCCATCGCTGCTATCGTCAC
CTACCTCAAGGCACATATGCAGCAATGGTTTGGGCAAAATGTCGAGATCA
CCACGGGAGCCCCCAACCTCATCAACCTCCGTCCTCGTTCCCTGCAGTCG
ACGTCCAAAGGTCGATTATGTACAATAGATGCTCCCCAAGACGAAATATA
CATTGAGCTTCGCAATTTTGACGATGTGGTACGTGTCTAAAATAGAATGA
GTGGGGAGGGACTATTTTGGAGTTTTCCCTATTTGTGGTCACTTGCTCCT
TTAATTATACCGAACACTAGTTGTTCCTCGGGTATTACTTAAAAAGTGAT
TGCCTTTTCCACCATTATTGCATTTTTCCACACTCGTCTCCCCTCCCCTA
TTGTTTTCATTCTTCGACATCAAGCATCTTCTCTCATCTTGCTCAATCTC
TTCCTTTTTTCTCGGCCACACAACTCACTGCAAAGCCATAATACTCCCTT
TCTTCACCATGATTACCCACAGGCACAAGTCCAAGACATTTTAACTGGTA
TCATGACAGGCACCATTGTCTTGACAGCTGGAAAGGAGGGCGGTACCTCG
ATCGCGGTGAAGGACTCCATTTGCCGCGCGGAGACGACTCTCAGCTTCGT
GCCCCCGCCGATGGAAACTCTTCACGACACAACCGACGCGAAAGACATGT
CCAAGCCATTGGCTCCTCTCCATATTGCATTGATTGTTGTGGTGGGCGTA
AGCGTCCTCTTTGCGGCCGTCTTCTTGGCCCGCCGTTACATGGTTCCCAA
GCCTCGCTCTGCGATTGTGCTGTCGTCCTAAAACAGGTTGCTAAATGTTG
TGGTGCAACTAAGGCTCATTATTTGAATGGATATGATGAGTGCTTGACCT
AAACATGTATGTATTCTTTGAAAGTGGTTGACTATTCGGGAGAAGCGAGG
GAGGTGTATGTATGTGAGAAAAAACATACTCTCAGGAGACATGGAGATAG
CGCGGATGACAGCAAAAGTCAATCTGCGCATGAAAACTCCGTCTGAGCTA
TGGTATTGTATTCTGGAGTCGAAAGAGAGAAAGGGCGGGTATCATATGTA
TACAGCCGCATTATTTTTGAAATTCTGCACCGCAGGAGCAGTTCTTGCCT
TGTTCGGATCGTCGTGAAGGATTCGTGGTTGGAAAGTTAATTCAACGCTA
AGTGATAAATTGTTATTTTTGCCC
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protein sequence of NO10G02980.1

>NO10G02980.1-protein ID=NO10G02980.1-protein|Name=NO10G02980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=377bp
MRGVMSRRGAVTLLVMCLSWLPGPLHATRGATPAEVEPYHVTSGSSSAGS
LSRLLDYDLPLPHDWIHNSQMDINALSFSYSYSYSFAKTPEPSETASRTA
TPAEVEPYHVTSGSSSAGSLSRLLDYDLPLPHDWIHNSQMDINALSFSYS
YSYSFAKTPEPSETASRTTTSVVAATAQDTPRHPSQSGEIPIVTMVLLMA
GSPEEQKEAIAAIVTYLKAHMQQWFGQNVEITTGAPNLINLRPRSLQSTS
KGRLCTIDAPQDEIYIELRNFDDVAQVQDILTGIMTGTIVLTAGKEGGTS
IAVKDSICRAETTLSFVPPPMETLHDTTDAKDMSKPLAPLHIALIVVVGV
SVLFAAVFLARRYMVPKPRSAIVLSS*
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protein sequence of NO10G02980.2

>NO10G02980.2-protein ID=NO10G02980.2-protein|Name=NO10G02980.2|organism=Nannochloropsis oceanica|type=polypeptide|length=278bp
MRGVMSRRGAVTLLVMCLSWLPGPLHATRGATPAEVEPYHVTSGSSSAGS
LSRLLDYDLPLPHDWIHNSQMDINALSFSYSYSYSFAKTPEPSETASRTA
TPAEVEPYHVTSGSSSAGSLSRLLDYDLPLPHDWIHNSQMDINALSFSYS
YSYSFAKTPEPSETASRTTTSVVAATAQDTPRHPSQSGEIPIVTMVLLMA
GSPEEQKEAIAAIVTYLKAHMQQWFGQNVEITTGAPNLINLRPRSLQSTS
KGRLCTIDAPQDEIYIELRNFDDVVRV*
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Synonyms
Publications