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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr10 | genome | chr10:826300..828923 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO10G02980.2 vs.
Match: EWM25496.1 (hypothetical protein Naga_100032g20 [Nannochloropsis gaditana]) HSP 1 Score: 112.5 bits (280), Expect = 2.200e-21 Identity = 70/168 (41.67%), Postives = 97/168 (57.74%), Query Frame = 0
Query: 112 SGSSSAGSLSRLLDYDLPLPHDWIHNSQMDINALSFSYSYSYSFAKTPEPSETASRTTTSVVAATAQDTPRHPSQSGEIPIVTMVLLMAGSPEEQKEAIAAIVTYLKAHMQQWFGQNVEITTGAPNLINL--RPRSLQSTSKGRLCTIDAPQDEIYIELRNFDDVVRV 278
S SS+GS SRLL YDLPLPHDWI + D +S S+SYSYSF+ E A T+ S+V A A P+ G IP+V + L++AG+PEEQ ++A+V Y + Q +I+ P L L + R L T +GRLC+ APQ+ I +RN++D +V
Sbjct: 52 SAESSSGSFSRLLAYDLPLPHDWIREYEKDTRDMSQSFSYSYSFS-----FEYAPTTSPSLVPAIA--PTMQPNLPGTIPVVNLFLVVAGTPEEQFALVSALVLYFIMALDV---QESDISVDTPVLERLLHQSRRLADTDQGRLCSSGAPQNSTSISIRNYEDAAKV 209
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO10G02980.2 ID=NO10G02980.2|Name=NO10G02980.2|organism=Nannochloropsis oceanica|type=mRNA|length=1818bp ATGCGCGGTGTCATGTCCCGCCGGGGTGCAGTCACCCTCCTCGTCATGTG CCTGTCATGGCTTCCGGGCCCGCTCCATGCCACCAGAGGAGCGACGCCGG CCGAGGTCGAGCCATACCATGTCACCAGCGGCAGCAGCAGCGCCGGAAGC TTAAGCCGACTCTTGGACTATGACTTACCTTTGCCCCATGATTGGATACA TAATTCTCAGATGGACATTAATGCGCTGTCCTTTTCGTATTCCTACTCCT ACTCCTTTGCCAAGACACCTGAGCCGAGCGAAACGGCCAGTCGCACGGCG ACGCCGGCCGAGGTCGAGCCATACCATGTCACCAGCGGCAGCAGCAGCGC CGGAAGCTTAAGCCGACTCTTGGACTATGACTTACCTTTGCCCCATGATT GGATACATAATTCTCAGATGGACATTAATGCGCTGTCCTTTTCGTATTCC TACTCCTACTCCTTTGCCAAGACACCTGAGCCGAGCGAAACGGCCAGTCG CACGACGACCTCGGTGGTGGCCGCCACGGCACAAGACACTCCGAGACACC CATCTCAATCCGGTGAGATTCCTATTGTGACCATGGTGCTCCTCATGGCG GGTTCCCCCGAAGAACAGAAGGAGGCCATCGCTGCTATCGTCACCTACCT CAAGGCACATATGCAGCAATGGTTTGGGCAAAATGTCGAGATCACCACGG GAGCCCCCAACCTCATCAACCTCCGTCCTCGTTCCCTGCAGTCGACGTCC AAAGGTCGATTATGTACAATAGATGCTCCCCAAGACGAAATATACATTGA GCTTCGCAATTTTGACGATGTGGTACGTGTCTAAAATAGAATGAGTGGGG AGGGACTATTTTGGAGTTTTCCCTATTTGTGGTCACTTGCTCCTTTAATT ATACCGAACACTAGTTGTTCCTCGGGTATTACTTAAAAAGTGATTGCCTT TTCCACCATTATTGCATTTTTCCACACTCGTCTCCCCTCCCCTATTGTTT TCATTCTTCGACATCAAGCATCTTCTCTCATCTTGCTCAATCTCTTCCTT TTTTCTCGGCCACACAACTCACTGCAAAGCCATAATACTCCCTTTCTTCA CCATGATTACCCACAGGCACAAGTCCAAGACATTTTAACTGGTATCATGA CAGGCACCATTGTCTTGACAGCTGGAAAGGAGGGCGGTACCTCGATCGCG GTGAAGGACTCCATTTGCCGCGCGGAGACGACTCTCAGCTTCGTGCCCCC GCCGATGGAAACTCTTCACGACACAACCGACGCGAAAGACATGTCCAAGC CATTGGCTCCTCTCCATATTGCATTGATTGTTGTGGTGGGCGTAAGCGTC CTCTTTGCGGCCGTCTTCTTGGCCCGCCGTTACATGGTTCCCAAGCCTCG CTCTGCGATTGTGCTGTCGTCCTAAAACAGGTTGCTAAATGTTGTGGTGC AACTAAGGCTCATTATTTGAATGGATATGATGAGTGCTTGACCTAAACAT GTATGTATTCTTTGAAAGTGGTTGACTATTCGGGAGAAGCGAGGGAGGTG TATGTATGTGAGAAAAAACATACTCTCAGGAGACATGGAGATAGCGCGGA TGACAGCAAAAGTCAATCTGCGCATGAAAACTCCGTCTGAGCTATGGTAT TGTATTCTGGAGTCGAAAGAGAGAAAGGGCGGGTATCATATGTATACAGC CGCATTATTTTTGAAATTCTGCACCGCAGGAGCAGTTCTTGCCTTGTTCG GATCGTCGTGAAGGATTCGTGGTTGGAAAGTTAATTCAACGCTAAGTGAT AAATTGTTATTTTTGCCC back to topprotein sequence of NO10G02980.2 >NO10G02980.2-protein ID=NO10G02980.2-protein|Name=NO10G02980.2|organism=Nannochloropsis oceanica|type=polypeptide|length=278bp MRGVMSRRGAVTLLVMCLSWLPGPLHATRGATPAEVEPYHVTSGSSSAGS LSRLLDYDLPLPHDWIHNSQMDINALSFSYSYSYSFAKTPEPSETASRTA TPAEVEPYHVTSGSSSAGSLSRLLDYDLPLPHDWIHNSQMDINALSFSYS YSYSFAKTPEPSETASRTTTSVVAATAQDTPRHPSQSGEIPIVTMVLLMA GSPEEQKEAIAAIVTYLKAHMQQWFGQNVEITTGAPNLINLRPRSLQSTS KGRLCTIDAPQDEIYIELRNFDDVVRV* back to topmRNA from alignment at chr10:826300..828923+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO10G02980.2 ID=NO10G02980.2|Name=NO10G02980.2|organism=Nannochloropsis oceanica|type=mRNA|length=2624bp|location=Sequence derived from alignment at chr10:826300..828923+ (Nannochloropsis oceanica) ATGCGCGGTGTCATGTCCCGCCGGGGTGCAGTCACCCTCCTCGTCATGTG
CCTGTCATGGCTTCCGGGCCCGCTCCATGCCACCAGAGGAGTAAGTTAGC
TCTCAGAAAGATAATGCGCATCCACAACGTTTCATCCACACATCTCTATT
CCCTTGACTCCATTTTCATGCAATATGCATAAAACAAACAGGCGACGCCG
GCCGAGGTCGAGCCATACCATGTCACCAGCGGCAGCAGCAGCGCCGGAAG
CTTAAGCCGACTCTTGGACTATGACTTACCTTTGCCCCATGATTGGATAC
ATAATGTAAGAGATACCTCCGACAATGGAGAAGGGGAGAGAGCAATTGGC
GTGTTTGGGACGCACTTTGGACCTACTTGTCTACCGTGTCCGGCTCTGAG
GGAGGGGGAGATGAGGACGGATGGAGGTTTCACGTAACTAGAGGGCGGAC
GATGCATTCACCTGCAGTTTATTTGATCACACAATTTTTCCACTACTATG
TAACCCAATGCACAGTCTCAGATGGACATTAATGCGCTGTCCTTTTCGTA
TTCCTACTCCTACTCCTTTGCCAAGACACCTGAGCCGAGCGAAACGGCCA
GTCGCACGGTATGAGTCGTCGACCACATGAGCGAGAATTATCGCTATTGC
TTCATCTTGTCATCACTCGTGAAGCGTATATAATTATGTTGGTGGCGGTC
TTCCTCTACTCTACTACATATGTGTACCTTAAACAGGCGACGCCGGCCGA
GGTCGAGCCATACCATGTCACCAGCGGCAGCAGCAGCGCCGGAAGCTTAA
GCCGACTCTTGGACTATGACTTACCTTTGCCCCATGATTGGATACATAAT
GTAAGAGATACCCCCGACAATGGAGAAGGGGAGAGAGCAATTGGCGTGTT
TGGGACGCACTTTGGACCTACTTGTCTACCGTGTCCGGCTCTGAGGGAGG
GGGAGATGAGGACGGATGGAGGTTTCACGTAACTAGAGGGCGGACGATGC
ATTCACCTGCAGTTTATTTGATCACACAATTTTTCCACTACTATGTAACC
CAATGCACAGTCTCAGATGGACATTAATGCGCTGTCCTTTTCGTATTCCT
ACTCCTACTCCTTTGCCAAGACACCTGAGCCGAGCGAAACGGCCAGTCGC
ACGGTATGAGTCGTCGACCACATGAGCGAGAATTATCGCTATTGCTTCAT
CTTGTCATCACTCGTGAAGCGTATATAATTATGTTGGTGGCGGTCCTGCT
TCATTTTCGTGCTGCTCTCATTCTCTCTTATCACAATTATCCTTCTCCCC
TTCCAATCAGACGACCTCGGTGGTGGCCGCCACGGCACAAGACACTCCGA
GACACCCATCTCAATCCGGTGAGATTCCTATTGTGACCATGGTGCTCCTC
ATGGCGGGTTCCCCCGAAGAACAGAAGGAGGCCATCGCTGCTATCGTCAC
CTACCTCAAGGCACATATGCAGCAATGGTTTGGGCAAAATGTCGAGATCA
CCACGGGAGCCCCCAACCTCATCAACCTCCGTCCTCGTTCCCTGCAGTCG
ACGTCCAAAGGTCGATTATGTACAATAGATGCTCCCCAAGACGAAATATA
CATTGAGCTTCGCAATTTTGACGATGTGGTACGTGTCTAAAATAGAATGA
GTGGGGAGGGACTATTTTGGAGTTTTCCCTATTTGTGGTCACTTGCTCCT
TTAATTATACCGAACACTAGTTGTTCCTCGGGTATTACTTAAAAAGTGAT
TGCCTTTTCCACCATTATTGCATTTTTCCACACTCGTCTCCCCTCCCCTA
TTGTTTTCATTCTTCGACATCAAGCATCTTCTCTCATCTTGCTCAATCTC
TTCCTTTTTTCTCGGCCACACAACTCACTGCAAAGCCATAATACTCCCTT
TCTTCACCATGATTACCCACAGGCACAAGTCCAAGACATTTTAACTGGTA
TCATGACAGGCACCATTGTCTTGACAGCTGGAAAGGAGGGCGGTACCTCG
ATCGCGGTGAAGGACTCCATTTGCCGCGCGGAGACGACTCTCAGCTTCGT
GCCCCCGCCGATGGAAACTCTTCACGACACAACCGACGCGAAAGACATGT
CCAAGCCATTGGCTCCTCTCCATATTGCATTGATTGTTGTGGTGGGCGTA
AGCGTCCTCTTTGCGGCCGTCTTCTTGGCCCGCCGTTACATGGTTCCCAA
GCCTCGCTCTGCGATTGTGCTGTCGTCCTAAAACAGGTTGCTAAATGTTG
TGGTGCAACTAAGGCTCATTATTTGAATGGATATGATGAGTGCTTGACCT
AAACATGTATGTATTCTTTGAAAGTGGTTGACTATTCGGGAGAAGCGAGG
GAGGTGTATGTATGTGAGAAAAAACATACTCTCAGGAGACATGGAGATAG
CGCGGATGACAGCAAAAGTCAATCTGCGCATGAAAACTCCGTCTGAGCTA
TGGTATTGTATTCTGGAGTCGAAAGAGAGAAAGGGCGGGTATCATATGTA
TACAGCCGCATTATTTTTGAAATTCTGCACCGCAGGAGCAGTTCTTGCCT
TGTTCGGATCGTCGTGAAGGATTCGTGGTTGGAAAGTTAATTCAACGCTA
AGTGATAAATTGTTATTTTTGCCC back to topCoding sequence (CDS) from alignment at chr10:826300..828923+ >NO10G02980.2 ID=NO10G02980.2|Name=NO10G02980.2|organism=Nannochloropsis oceanica|type=CDS|length=834bp|location=Sequence derived from alignment at chr10:826300..828923+ (Nannochloropsis oceanica) ATGCGCGGTGTCATGTCCCGCCGGGGTGCAGTCACCCTCCTCGTCATGTG CCTGTCATGGCTTCCGGGCCCGCTCCATGCCACCAGAGGAGCGACGCCGG CCGAGGTCGAGCCATACCATGTCACCAGCGGCAGCAGCAGCGCCGGAAGC TTAAGCCGACTCTTGGACTATGACTTACCTTTGCCCCATGATTGGATACA TAATTCTCAGATGGACATTAATGCGCTGTCCTTTTCGTATTCCTACTCCT ACTCCTTTGCCAAGACACCTGAGCCGAGCGAAACGGCCAGTCGCACGGCG ACGCCGGCCGAGGTCGAGCCATACCATGTCACCAGCGGCAGCAGCAGCGC CGGAAGCTTAAGCCGACTCTTGGACTATGACTTACCTTTGCCCCATGATT GGATACATAATTCTCAGATGGACATTAATGCGCTGTCCTTTTCGTATTCC TACTCCTACTCCTTTGCCAAGACACCTGAGCCGAGCGAAACGGCCAGTCG CACGACGACCTCGGTGGTGGCCGCCACGGCACAAGACACTCCGAGACACC CATCTCAATCCGGTGAGATTCCTATTGTGACCATGGTGCTCCTCATGGCG GGTTCCCCCGAAGAACAGAAGGAGGCCATCGCTGCTATCGTCACCTACCT CAAGGCACATATGCAGCAATGGTTTGGGCAAAATGTCGAGATCACCACGG GAGCCCCCAACCTCATCAACCTCCGTCCTCGTTCCCTGCAGTCGACGTCC AAAGGTCGATTATGTACAATAGATGCTCCCCAAGACGAAATATACATTGA GCTTCGCAATTTTGACGATGTGGTACGTGTCTAA back to top
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