NO10G02870, NO10G02870 (gene) Nannochloropsis oceanica

Overview
NameNO10G02870
Unique NameNO10G02870
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3664
Alignment locationchr10:786203..789866 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:786203..789866 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0051726regulation of cell cycle
Homology
BLAST of NO10G02870 vs. NCBI_GenBank
Match: EWM25521.1 (hypothetical protein Naga_100032g38 [Nannochloropsis gaditana])

HSP 1 Score: 303.9 bits (777), Expect = 7.700e-79
Identity = 183/297 (61.62%), Postives = 217/297 (73.06%), Query Frame = 0
Query:    1 MATTCFPHVELKNLGNHLAKLRAATTAFPAAPPSSVQWKTTPALQDTLTRLSLCGERVRDTATKFSLVLSSTTGGPGIKAISNEMRQSCDSLLAALAALVDPAVGGTAAARAGAGAGAPLMELYCQQTRAVLRATEDLIKHITSVSSNLLSSPTPRQSPLGVQTELAPKTGVVWEQCDKLGKLPRCNKVAFRRAFFNHYSAVKDTLREFEEXXXXXXXXXXXXXXXXXXXXXXXVEGVQDIELTGEEDEEGDFFG--GERRMKEWERENVKRCLVALGHCGEMIKRVLDTVDEAMTE 296
            MAT  FP V L+ LG HL+KLRAATT+ P AP +S+QW  +PALQD L  L+  G+RVRDTATKFSLVL++TT GPGIK+I +EMRQSCDSLLAALA LV PA+          GAG PLMELYCQQ R++LRA E+L++HI S  S LLS+P P +SP GV+ ELAPKTGVVW+QC++L KLPR N+VA+RRAF  H SAVKDTLREF E       XXXXXXXXXXXXXXXX       E+   E EE  F+G  G   M+EWE+EN+ RCLV LGHCGEM+K  L+ V+E   E
Sbjct:    1 MATASFPLVTLEALGRHLSKLRAATTSLPPAPLTSLQWTASPALQDALKLLTDSGDRVRDTATKFSLVLTTTTSGPGIKSICDEMRQSCDSLLAALALLVGPAI----------GAGGPLMELYCQQVRSILRAIEELLRHIASPDSKLLSAPRPLRSPEGVKDELAPKTGVVWQQCEELKKLPRSNRVAYRRAFLTHQSAVKDTLREFREMLAEAEDXXXXXXXXXXXXXXXXXXXXXXGEMADLELEEA-FWGENGGGAMREWEKENLSRCLVPLGHCGEMVKGFLEAVEEVAME 286          
The following BLAST results are available for this feature:
BLAST of NO10G02870 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25521.17.700e-7961.62hypothetical protein Naga_100032g38 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001156NSK001156Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G02870.1NO10G02870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|418395gene_3918Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100032g38gene5003Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G02870.1NO10G02870.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G02870 ID=NO10G02870|Name=NO10G02870|organism=Nannochloropsis oceanica|type=gene|length=3664bp
CCCGCCCTCTCCCCTCGCCTCCATGATGGAATGGACCACCAAGAAGGTCA
GTGAAGACCTAACAATAAACACAAGTAAATTTCCACAACACGCAGCCAAC
ACACTCCGCCGGACAGGGCTGGAGCTGTCCAAAAAATACAAAAACAAGGG
CCCAAATGCCGCCACCACATGAAACAACGTCCCAAGCGCTTGACTGCAAA
TCCACAAATGACTCGTCACCAACCATCGGATCCGCTCACTTGCCTCCTCC
GCCTCCGCCGCGTGACTGACCCGGACGAGCCGTCTCCACAACTTGCACCT
CGCAGGGGCCTGCAGCAGCTGCAGCACCAACTGCAGACACAGCCAATGCC
ACGCTGTTCTCTCATAGAACGTATCCCCCCCCGCGCCGAAACTTGCCGCT
GCCTCTAGCTGAAGCATCACCCCTCCGATCCAGCAATACAACAGAGCCCT
TAGATAGGCAGCAGCAGCGTATGGCTGCAACCGAAAGATCTCCACCAAGT
AAGCATTGGAACCATCCCCGTCCTCCCCCCTTTCCTCCCTTGTGCTCATC
CCTCCTTCCATCAGGAAACCGGCGGCCGAGCGCCATGCATCGGCGGAGGG
TGGGGTGCGAATGAAAAGTCCCTGCAAGCCAAGCAGAGAGAAAGGCGCAC
GCAAACAGGGGCGAGGACCAATTCCCGTTAACGCACGAGAGTAAGAGCGG
GCGTAGGAGCGAGAGAGAGGCGAGCAGGGACGGCAGGGGCAGCGTTCGAT
GTAATGGTGGAAGATTTTATAGTGACCCAAAAGACGAGCTTTATGAACCC
AGATGAGGGTGCGGAGCTGTAGGAGGGAATAAGGGAAGTAGAAAGGAAGG
GGCAGTGAGTGTAATATGATGAAAGTAGCTTGTTGATAGGGAGCAAGGGC
GTGTAGATCTAGCGCGGGGATGGACGGGGAAATGAAGGTGTGAATGCATA
CATGATGGGAGAGAGGTTCTAGAAGAAAGGAAGGAAAAGGACCCGATTCT
TCATCTCTCACAAGCACGAAAAGACAACACGGGAGCAGAATCAAAAAGAT
TCAATACGTGGAAGGTCCGATTCGGGCAATCAAGGCCGATAGATTCGCTG
CTCGCTACAGGAGAGGGAGGGACGAAAAAGGGAACGGCCGGGTGCTCGCG
CCCAAGGCACTACCCACACACGCTTGTACACACGCACGCATATGTTAAGA
TGCATCCTACGAGTGTCAGTCTCAAATCGCATTGATATGGCACCCTTAAC
GAGTCCTCTCCTCTCACTGCCTCCACTTTCACCTCCTTCCATCAAACCTT
TCTCCCAAACTCACCTTATCCCGAAAGCCTAGTCGATGGAAGCTCGTATA
ATCAATCTCTGCACTGCCAGGCGCGCCTCGCGCGGTCCCCAGCAGCCATT
CAACATCTCCAATTTCTTCCTCCCTCTCCTCCTCGTCGTAGTCCTCCCCT
GCCTGGCCTTCCTGTTGGGGTCGCCCCCCTCTCTGTCGATGCCCAGCCAG
GCCATGTCCGCTGCTCGCGCTCCCGTAGAGCAACTCTCCATCCGACGCCT
CCAGTGTAGACACAGGTCGTGGCCGTCGATACAAGCGTCGCATGGGCGTG
GTGGTGTCGCTGCTGCTGCTGGCGCCCCCGTGATCGTCGTCCGCCATGTC
ACTGTTCTGTTGTAGATGATAGGGGATGAGCTGTTCGTTAGAAATCAGAA
GCACTAGCAGGAATCCGCTAAAACACGGGCCAACCCCCGAACACGCGCCA
ATTACAGACATGGAGCGGCCGAATATTAGAGTGTGGATTTGGCTGTCGCG
CAAGCGGTGAGAAGATCAAAGTTGGGACGACGCACTTCAATTGCAAAGGC
AAAGCCCACACAGAGGGCGATAAGCGTTCCGGCCCTTCGCCACCCCCCCT
GAGCTTGACCACTACCATCTCTCACCCCAGTTCTTTTGAACGCCCAACAA
CACCACCACATCCACCACTATAACTATAGACAGCAGCATGGCTACCACTT
GCTTTCCTCACGTGGAGCTAAAAAATTTGGGCAATCATCTCGCCAAGCTT
CGGgtacgtctagaaatggaggcacgggggcaattgtgaggaaaatgata
ctccgcagtttaagacgcctttcgcccctaatctggcaccgatacacgca
caatcatctccaaaaatgtatgcatatacgaaaaagtgtcaatgcttgcc
cacagcgttcgattctattcctctattgctggtcatcgcagcacgctata
gcctcccaacccccctatcccctatttcccctatttctggcctgcccctg
tctccatctcacacatgttccgcacatacacaacttgtagGCTGCCACCA
CCGCATTTCCTGCTGCACCACCCTCATCCGTGCAATGGAAAACCACCCCT
GCTCTTCAAGACACCCTCACCCGCCTTTCTCTCTGTGGGGAGCGAGTCCG
CGATACGGCCACCAAATTTAGCCTCGTTCTTTCAAGCACCACCGGTGGCC
CAGGCATTAAAGCTATATCTAACGAAATGCGACAAAGCTGTGATTCTCTT
CTCGCCGCTTTGGCAGCCTTAGTCGACCCTGCGGTAGGAGGAACAGCAGC
AGCAAGAGCAGGAGCAGGAGCGGGAGCACCTCTGATGGAACTCTACTGCC
AACAAACTCGGGCCGTTTTAAGAGCAACCGAGGATCTAATCAAACATATC
ACTTCTGTCTCTTCCAACCTCCTCTCCTCTCCCACGCCTCGTCAATCTCC
CCTCGGGGTCCAAACCGAGTTGGCCCCGAAGACAGGGGTGGTGTGGGAGC
AATGCGACAAGTTGGGCAAGTTGCCCCGTTGCAACAAAGTGGCGTTTCGA
CGCGCTTTTTTCAACCATTATTCGGCGGTTAAAGACACATTGAGGGAATT
CGAGGAATTGTTGCAGGAGGAGGCAGAGGAAGAACGGACGGAGGGCGAGG
AGGAGGAGGAGGAGGACGACGATCTGGTAGAGGGGGTGCAAGACATTGAA
CTTACAGGAGAGGAGGACGAGGAGGGAGATTTCTTCGGAGGGGAAAGACG
AATGAAAGAGTGGGAGAGAGAGAATGTGAAGAGGTGTTTGGTTGCCTTGG
GGCATTGCGGCGAGATGATCAAGAGGGTTTTAGACACCGTGGACGAGGCG
ATGACGGAGGAGGGAGGGGAGGGAGGGGAGGGAGGAAGGGAGGAAGGGCA
GGAGGAGGGGGAGAGGATACAGAAGGTCGCGGAGGTGGAGGAGAGTTGTC
AAGGCTTGGCGGCGGCAGTCGTGAATGCGGCGGATGCATTGTACCCGCCT
CAAgtaggaaagggagggagggagggggggagcattggttcattatccat
atgtgtcttcaagagagatacaaaaatgtgcatttgggctggcccatctc
accttcatttcctcctttcctcttccccgctcttagATACGGCAAGAGCT
CGAATTGCAACTAGGCGCACTGGTGGCCGCAGCAGCGCACACAGCAGCAG
CAGTGGGCCGGTTCCCTGCGGGCTCGGCTTCTAGAAACTGCCAAGAGGAG
ATGGAGAAAGTGCGGAGGGCCGCAGCGCGTGGTGTGGCGGAGGGAACGGA
AGGCGAGGAGGAGGATGAGGAGAAAGGGGAGGATGAAGAGGCTGGTGGAG
AGGTCTCATCTTGA
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protein sequence of NO10G02870.1

>NO10G02870.1-protein ID=NO10G02870.1-protein|Name=NO10G02870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=419bp
MATTCFPHVELKNLGNHLAKLRAATTAFPAAPPSSVQWKTTPALQDTLTR
LSLCGERVRDTATKFSLVLSSTTGGPGIKAISNEMRQSCDSLLAALAALV
DPAVGGTAAARAGAGAGAPLMELYCQQTRAVLRATEDLIKHITSVSSNLL
SSPTPRQSPLGVQTELAPKTGVVWEQCDKLGKLPRCNKVAFRRAFFNHYS
AVKDTLREFEELLQEEAEEERTEGEEEEEEDDDLVEGVQDIELTGEEDEE
GDFFGGERRMKEWERENVKRCLVALGHCGEMIKRVLDTVDEAMTEEGGEG
GEGGREEGQEEGERIQKVAEVEESCQGLAAAVVNAADALYPPQIRQELEL
QLGALVAAAAHTAAAVGRFPAGSASRNCQEEMEKVRRAAARGVAEGTEGE
EEDEEKGEDEEAGGEVSS*
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Synonyms
Publications