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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr10 | genome | chr10:786203..789866 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO10G02870.1 vs.
Match: EWM25521.1 (hypothetical protein Naga_100032g38 [Nannochloropsis gaditana]) HSP 1 Score: 318.9 bits (816), Expect = 2.300e-83 Identity = 184/320 (57.50%), Postives = 228/320 (71.25%), Query Frame = 0
Query: 1 MATTCFPHVELKNLGNHLAKLRAATTAFPAAPPSSVQWKTTPALQDTLTRLSLCGERVRDTATKFSLVLSSTTGGPGIKAISNEMRQSCDSLLAALAALVDPAVGGTAAARAGAGAGAPLMELYCQQTRAVLRATEDLIKHITSVSSNLLSSPTPRQSPLGVQTELAPKTGVVWEQCDKLGKLPRCNKVAFRRAFFNHYSAVKDTLREFEELLQEEAEEERTEGEEEEEEDDDLVEGVQDIELTGEEDEEGDFFG--GERRMKEWERENVKRCLVALGHCGEMIKRVLDTVDEAMTEEGGEGGEGGREEGQEEGERIQKV 319
MAT FP V L+ LG HL+KLRAATT+ P AP +S+QW +PALQD L L+ G+RVRDTATKFSLVL++TT GPGIK+I +EMRQSCDSLLAALA LV PA+G AG PLMELYCQQ R++LRA E+L++HI S S LLS+P P +SP GV+ ELAPKTGVVW+QC++L KLPR N+VA+RRAF H SAVKDTLREF E+L E ++ TE EEE++E+++ EG E+ E EE F+G G M+EWE+EN+ RCLV LGHCGEM+K L+ V+E EGG E + EG +KV
Sbjct: 1 MATASFPLVTLEALGRHLSKLRAATTSLPPAPLTSLQWTASPALQDALKLLTDSGDRVRDTATKFSLVLTTTTSGPGIKSICDEMRQSCDSLLAALALLVGPAIG----------AGGPLMELYCQQVRSILRAIEELLRHIASPDSKLLSAPRPLRSPEGVKDELAPKTGVVWQQCEELKKLPRSNRVAYRRAFLTHQSAVKDTLREFREMLAEAEDDAGTESEEEDDEEEEGEEGGLAGEMADLELEEA-FWGENGGGAMREWEKENLSRCLVPLGHCGEMVKGFLEAVEEVAM-------EGGGRERRREGNTQEKV 302
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO10G02870.1 ID=NO10G02870.1|Name=NO10G02870.1|organism=Nannochloropsis oceanica|type=mRNA|length=3244bp CCCGCCCTCTCCCCTCGCCTCCATGATGGAATGGACCACCAAGAAGGTCA GTGAAGACCTAACAATAAACACAAGTAAATTTCCACAACACGCAGCCAAC ACACTCCGCCGGACAGGGCTGGAGCTGTCCAAAAAATACAAAAACAAGGG CCCAAATGCCGCCACCACATGAAACAACGTCCCAAGCGCTTGACTGCAAA TCCACAAATGACTCGTCACCAACCATCGGATCCGCTCACTTGCCTCCTCC GCCTCCGCCGCGTGACTGACCCGGACGAGCCGTCTCCACAACTTGCACCT CGCAGGGGCCTGCAGCAGCTGCAGCACCAACTGCAGACACAGCCAATGCC ACGCTGTTCTCTCATAGAACGTATCCCCCCCCGCGCCGAAACTTGCCGCT GCCTCTAGCTGAAGCATCACCCCTCCGATCCAGCAATACAACAGAGCCCT TAGATAGGCAGCAGCAGCGTATGGCTGCAACCGAAAGATCTCCACCAAGT AAGCATTGGAACCATCCCCGTCCTCCCCCCTTTCCTCCCTTGTGCTCATC CCTCCTTCCATCAGGAAACCGGCGGCCGAGCGCCATGCATCGGCGGAGGG TGGGGTGCGAATGAAAAGTCCCTGCAAGCCAAGCAGAGAGAAAGGCGCAC GCAAACAGGGGCGAGGACCAATTCCCGTTAACGCACGAGAGTAAGAGCGG GCGTAGGAGCGAGAGAGAGGCGAGCAGGGACGGCAGGGGCAGCGTTCGAT GTAATGGTGGAAGATTTTATAGTGACCCAAAAGACGAGCTTTATGAACCC AGATGAGGGTGCGGAGCTGTAGGAGGGAATAAGGGAAGTAGAAAGGAAGG GGCAGTGAGTGTAATATGATGAAAGTAGCTTGTTGATAGGGAGCAAGGGC GTGTAGATCTAGCGCGGGGATGGACGGGGAAATGAAGGTGTGAATGCATA CATGATGGGAGAGAGGTTCTAGAAGAAAGGAAGGAAAAGGACCCGATTCT TCATCTCTCACAAGCACGAAAAGACAACACGGGAGCAGAATCAAAAAGAT TCAATACGTGGAAGGTCCGATTCGGGCAATCAAGGCCGATAGATTCGCTG CTCGCTACAGGAGAGGGAGGGACGAAAAAGGGAACGGCCGGGTGCTCGCG CCCAAGGCACTACCCACACACGCTTGTACACACGCACGCATATGTTAAGA TGCATCCTACGAGTGTCAGTCTCAAATCGCATTGATATGGCACCCTTAAC GAGTCCTCTCCTCTCACTGCCTCCACTTTCACCTCCTTCCATCAAACCTT TCTCCCAAACTCACCTTATCCCGAAAGCCTAGTCGATGGAAGCTCGTATA ATCAATCTCTGCACTGCCAGGCGCGCCTCGCGCGGTCCCCAGCAGCCATT CAACATCTCCAATTTCTTCCTCCCTCTCCTCCTCGTCGTAGTCCTCCCCT GCCTGGCCTTCCTGTTGGGGTCGCCCCCCTCTCTGTCGATGCCCAGCCAG GCCATGTCCGCTGCTCGCGCTCCCGTAGAGCAACTCTCCATCCGACGCCT CCAGTGTAGACACAGGTCGTGGCCGTCGATACAAGCGTCGCATGGGCGTG GTGGTGTCGCTGCTGCTGCTGGCGCCCCCGTGATCGTCGTCCGCCATGTC ACTGTTCTGTTGTAGATGATAGGGGATGAGCTGTTCGTTAGAAATCAGAA GCACTAGCAGGAATCCGCTAAAACACGGGCCAACCCCCGAACACGCGCCA ATTACAGACATGGAGCGGCCGAATATTAGAGTGTGGATTTGGCTGTCGCG CAAGCGGTGAGAAGATCAAAGTTGGGACGACGCACTTCAATTGCAAAGGC AAAGCCCACACAGAGGGCGATAAGCGTTCCGGCCCTTCGCCACCCCCCCT GAGCTTGACCACTACCATCTCTCACCCCAGTTCTTTTGAACGCCCAACAA CACCACCACATCCACCACTATAACTATAGACAGCAGCATGGCTACCACTT GCTTTCCTCACGTGGAGCTAAAAAATTTGGGCAATCATCTCGCCAAGCTT CGGGCTGCCACCACCGCATTTCCTGCTGCACCACCCTCATCCGTGCAATG GAAAACCACCCCTGCTCTTCAAGACACCCTCACCCGCCTTTCTCTCTGTG GGGAGCGAGTCCGCGATACGGCCACCAAATTTAGCCTCGTTCTTTCAAGC ACCACCGGTGGCCCAGGCATTAAAGCTATATCTAACGAAATGCGACAAAG CTGTGATTCTCTTCTCGCCGCTTTGGCAGCCTTAGTCGACCCTGCGGTAG GAGGAACAGCAGCAGCAAGAGCAGGAGCAGGAGCGGGAGCACCTCTGATG GAACTCTACTGCCAACAAACTCGGGCCGTTTTAAGAGCAACCGAGGATCT AATCAAACATATCACTTCTGTCTCTTCCAACCTCCTCTCCTCTCCCACGC CTCGTCAATCTCCCCTCGGGGTCCAAACCGAGTTGGCCCCGAAGACAGGG GTGGTGTGGGAGCAATGCGACAAGTTGGGCAAGTTGCCCCGTTGCAACAA AGTGGCGTTTCGACGCGCTTTTTTCAACCATTATTCGGCGGTTAAAGACA CATTGAGGGAATTCGAGGAATTGTTGCAGGAGGAGGCAGAGGAAGAACGG ACGGAGGGCGAGGAGGAGGAGGAGGAGGACGACGATCTGGTAGAGGGGGT GCAAGACATTGAACTTACAGGAGAGGAGGACGAGGAGGGAGATTTCTTCG GAGGGGAAAGACGAATGAAAGAGTGGGAGAGAGAGAATGTGAAGAGGTGT TTGGTTGCCTTGGGGCATTGCGGCGAGATGATCAAGAGGGTTTTAGACAC CGTGGACGAGGCGATGACGGAGGAGGGAGGGGAGGGAGGGGAGGGAGGAA GGGAGGAAGGGCAGGAGGAGGGGGAGAGGATACAGAAGGTCGCGGAGGTG GAGGAGAGTTGTCAAGGCTTGGCGGCGGCAGTCGTGAATGCGGCGGATGC ATTGTACCCGCCTCAAATACGGCAAGAGCTCGAATTGCAACTAGGCGCAC TGGTGGCCGCAGCAGCGCACACAGCAGCAGCAGTGGGCCGGTTCCCTGCG GGCTCGGCTTCTAGAAACTGCCAAGAGGAGATGGAGAAAGTGCGGAGGGC CGCAGCGCGTGGTGTGGCGGAGGGAACGGAAGGCGAGGAGGAGGATGAGG AGAAAGGGGAGGATGAAGAGGCTGGTGGAGAGGTCTCATCTTGA back to topprotein sequence of NO10G02870.1 >NO10G02870.1-protein ID=NO10G02870.1-protein|Name=NO10G02870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=419bp MATTCFPHVELKNLGNHLAKLRAATTAFPAAPPSSVQWKTTPALQDTLTR LSLCGERVRDTATKFSLVLSSTTGGPGIKAISNEMRQSCDSLLAALAALV DPAVGGTAAARAGAGAGAPLMELYCQQTRAVLRATEDLIKHITSVSSNLL SSPTPRQSPLGVQTELAPKTGVVWEQCDKLGKLPRCNKVAFRRAFFNHYS AVKDTLREFEELLQEEAEEERTEGEEEEEEDDDLVEGVQDIELTGEEDEE GDFFGGERRMKEWERENVKRCLVALGHCGEMIKRVLDTVDEAMTEEGGEG GEGGREEGQEEGERIQKVAEVEESCQGLAAAVVNAADALYPPQIRQELEL QLGALVAAAAHTAAAVGRFPAGSASRNCQEEMEKVRRAAARGVAEGTEGE EEDEEKGEDEEAGGEVSS* back to topmRNA from alignment at chr10:786203..789866- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO10G02870.1 ID=NO10G02870.1|Name=NO10G02870.1|organism=Nannochloropsis oceanica|type=mRNA|length=3664bp|location=Sequence derived from alignment at chr10:786203..789866- (Nannochloropsis oceanica) CCCGCCCTCTCCCCTCGCCTCCATGATGGAATGGACCACCAAGAAGGTCA
GTGAAGACCTAACAATAAACACAAGTAAATTTCCACAACACGCAGCCAAC
ACACTCCGCCGGACAGGGCTGGAGCTGTCCAAAAAATACAAAAACAAGGG
CCCAAATGCCGCCACCACATGAAACAACGTCCCAAGCGCTTGACTGCAAA
TCCACAAATGACTCGTCACCAACCATCGGATCCGCTCACTTGCCTCCTCC
GCCTCCGCCGCGTGACTGACCCGGACGAGCCGTCTCCACAACTTGCACCT
CGCAGGGGCCTGCAGCAGCTGCAGCACCAACTGCAGACACAGCCAATGCC
ACGCTGTTCTCTCATAGAACGTATCCCCCCCCGCGCCGAAACTTGCCGCT
GCCTCTAGCTGAAGCATCACCCCTCCGATCCAGCAATACAACAGAGCCCT
TAGATAGGCAGCAGCAGCGTATGGCTGCAACCGAAAGATCTCCACCAAGT
AAGCATTGGAACCATCCCCGTCCTCCCCCCTTTCCTCCCTTGTGCTCATC
CCTCCTTCCATCAGGAAACCGGCGGCCGAGCGCCATGCATCGGCGGAGGG
TGGGGTGCGAATGAAAAGTCCCTGCAAGCCAAGCAGAGAGAAAGGCGCAC
GCAAACAGGGGCGAGGACCAATTCCCGTTAACGCACGAGAGTAAGAGCGG
GCGTAGGAGCGAGAGAGAGGCGAGCAGGGACGGCAGGGGCAGCGTTCGAT
GTAATGGTGGAAGATTTTATAGTGACCCAAAAGACGAGCTTTATGAACCC
AGATGAGGGTGCGGAGCTGTAGGAGGGAATAAGGGAAGTAGAAAGGAAGG
GGCAGTGAGTGTAATATGATGAAAGTAGCTTGTTGATAGGGAGCAAGGGC
GTGTAGATCTAGCGCGGGGATGGACGGGGAAATGAAGGTGTGAATGCATA
CATGATGGGAGAGAGGTTCTAGAAGAAAGGAAGGAAAAGGACCCGATTCT
TCATCTCTCACAAGCACGAAAAGACAACACGGGAGCAGAATCAAAAAGAT
TCAATACGTGGAAGGTCCGATTCGGGCAATCAAGGCCGATAGATTCGCTG
CTCGCTACAGGAGAGGGAGGGACGAAAAAGGGAACGGCCGGGTGCTCGCG
CCCAAGGCACTACCCACACACGCTTGTACACACGCACGCATATGTTAAGA
TGCATCCTACGAGTGTCAGTCTCAAATCGCATTGATATGGCACCCTTAAC
GAGTCCTCTCCTCTCACTGCCTCCACTTTCACCTCCTTCCATCAAACCTT
TCTCCCAAACTCACCTTATCCCGAAAGCCTAGTCGATGGAAGCTCGTATA
ATCAATCTCTGCACTGCCAGGCGCGCCTCGCGCGGTCCCCAGCAGCCATT
CAACATCTCCAATTTCTTCCTCCCTCTCCTCCTCGTCGTAGTCCTCCCCT
GCCTGGCCTTCCTGTTGGGGTCGCCCCCCTCTCTGTCGATGCCCAGCCAG
GCCATGTCCGCTGCTCGCGCTCCCGTAGAGCAACTCTCCATCCGACGCCT
CCAGTGTAGACACAGGTCGTGGCCGTCGATACAAGCGTCGCATGGGCGTG
GTGGTGTCGCTGCTGCTGCTGGCGCCCCCGTGATCGTCGTCCGCCATGTC
ACTGTTCTGTTGTAGATGATAGGGGATGAGCTGTTCGTTAGAAATCAGAA
GCACTAGCAGGAATCCGCTAAAACACGGGCCAACCCCCGAACACGCGCCA
ATTACAGACATGGAGCGGCCGAATATTAGAGTGTGGATTTGGCTGTCGCG
CAAGCGGTGAGAAGATCAAAGTTGGGACGACGCACTTCAATTGCAAAGGC
AAAGCCCACACAGAGGGCGATAAGCGTTCCGGCCCTTCGCCACCCCCCCT
GAGCTTGACCACTACCATCTCTCACCCCAGTTCTTTTGAACGCCCAACAA
CACCACCACATCCACCACTATAACTATAGACAGCAGCATGGCTACCACTT
GCTTTCCTCACGTGGAGCTAAAAAATTTGGGCAATCATCTCGCCAAGCTT
CGGGTACGTCTAGAAATGGAGGCACGGGGGCAATTGTGAGGAAAATGATA
CTCCGCAGTTTAAGACGCCTTTCGCCCCTAATCTGGCACCGATACACGCA
CAATCATCTCCAAAAATGTATGCATATACGAAAAAGTGTCAATGCTTGCC
CACAGCGTTCGATTCTATTCCTCTATTGCTGGTCATCGCAGCACGCTATA
GCCTCCCAACCCCCCTATCCCCTATTTCCCCTATTTCTGGCCTGCCCCTG
TCTCCATCTCACACATGTTCCGCACATACACAACTTGTAGGCTGCCACCA
CCGCATTTCCTGCTGCACCACCCTCATCCGTGCAATGGAAAACCACCCCT
GCTCTTCAAGACACCCTCACCCGCCTTTCTCTCTGTGGGGAGCGAGTCCG
CGATACGGCCACCAAATTTAGCCTCGTTCTTTCAAGCACCACCGGTGGCC
CAGGCATTAAAGCTATATCTAACGAAATGCGACAAAGCTGTGATTCTCTT
CTCGCCGCTTTGGCAGCCTTAGTCGACCCTGCGGTAGGAGGAACAGCAGC
AGCAAGAGCAGGAGCAGGAGCGGGAGCACCTCTGATGGAACTCTACTGCC
AACAAACTCGGGCCGTTTTAAGAGCAACCGAGGATCTAATCAAACATATC
ACTTCTGTCTCTTCCAACCTCCTCTCCTCTCCCACGCCTCGTCAATCTCC
CCTCGGGGTCCAAACCGAGTTGGCCCCGAAGACAGGGGTGGTGTGGGAGC
AATGCGACAAGTTGGGCAAGTTGCCCCGTTGCAACAAAGTGGCGTTTCGA
CGCGCTTTTTTCAACCATTATTCGGCGGTTAAAGACACATTGAGGGAATT
CGAGGAATTGTTGCAGGAGGAGGCAGAGGAAGAACGGACGGAGGGCGAGG
AGGAGGAGGAGGAGGACGACGATCTGGTAGAGGGGGTGCAAGACATTGAA
CTTACAGGAGAGGAGGACGAGGAGGGAGATTTCTTCGGAGGGGAAAGACG
AATGAAAGAGTGGGAGAGAGAGAATGTGAAGAGGTGTTTGGTTGCCTTGG
GGCATTGCGGCGAGATGATCAAGAGGGTTTTAGACACCGTGGACGAGGCG
ATGACGGAGGAGGGAGGGGAGGGAGGGGAGGGAGGAAGGGAGGAAGGGCA
GGAGGAGGGGGAGAGGATACAGAAGGTCGCGGAGGTGGAGGAGAGTTGTC
AAGGCTTGGCGGCGGCAGTCGTGAATGCGGCGGATGCATTGTACCCGCCT
CAAGTAGGAAAGGGAGGGAGGGAGGGGGGGAGCATTGGTTCATTATCCAT
ATGTGTCTTCAAGAGAGATACAAAAATGTGCATTTGGGCTGGCCCATCTC
ACCTTCATTTCCTCCTTTCCTCTTCCCCGCTCTTAGATACGGCAAGAGCT
CGAATTGCAACTAGGCGCACTGGTGGCCGCAGCAGCGCACACAGCAGCAG
CAGTGGGCCGGTTCCCTGCGGGCTCGGCTTCTAGAAACTGCCAAGAGGAG
ATGGAGAAAGTGCGGAGGGCCGCAGCGCGTGGTGTGGCGGAGGGAACGGA
AGGCGAGGAGGAGGATGAGGAGAAAGGGGAGGATGAAGAGGCTGGTGGAG
AGGTCTCATCTTGA back to topCoding sequence (CDS) from alignment at chr10:786203..789866- >NO10G02870.1 ID=NO10G02870.1|Name=NO10G02870.1|organism=Nannochloropsis oceanica|type=CDS|length=1257bp|location=Sequence derived from alignment at chr10:786203..789866- (Nannochloropsis oceanica) ATGGCTACCACTTGCTTTCCTCACGTGGAGCTAAAAAATTTGGGCAATCA TCTCGCCAAGCTTCGGGCTGCCACCACCGCATTTCCTGCTGCACCACCCT CATCCGTGCAATGGAAAACCACCCCTGCTCTTCAAGACACCCTCACCCGC CTTTCTCTCTGTGGGGAGCGAGTCCGCGATACGGCCACCAAATTTAGCCT CGTTCTTTCAAGCACCACCGGTGGCCCAGGCATTAAAGCTATATCTAACG AAATGCGACAAAGCTGTGATTCTCTTCTCGCCGCTTTGGCAGCCTTAGTC GACCCTGCGGTAGGAGGAACAGCAGCAGCAAGAGCAGGAGCAGGAGCGGG AGCACCTCTGATGGAACTCTACTGCCAACAAACTCGGGCCGTTTTAAGAG CAACCGAGGATCTAATCAAACATATCACTTCTGTCTCTTCCAACCTCCTC TCCTCTCCCACGCCTCGTCAATCTCCCCTCGGGGTCCAAACCGAGTTGGC CCCGAAGACAGGGGTGGTGTGGGAGCAATGCGACAAGTTGGGCAAGTTGC CCCGTTGCAACAAAGTGGCGTTTCGACGCGCTTTTTTCAACCATTATTCG GCGGTTAAAGACACATTGAGGGAATTCGAGGAATTGTTGCAGGAGGAGGC AGAGGAAGAACGGACGGAGGGCGAGGAGGAGGAGGAGGAGGACGACGATC TGGTAGAGGGGGTGCAAGACATTGAACTTACAGGAGAGGAGGACGAGGAG GGAGATTTCTTCGGAGGGGAAAGACGAATGAAAGAGTGGGAGAGAGAGAA TGTGAAGAGGTGTTTGGTTGCCTTGGGGCATTGCGGCGAGATGATCAAGA GGGTTTTAGACACCGTGGACGAGGCGATGACGGAGGAGGGAGGGGAGGGA GGGGAGGGAGGAAGGGAGGAAGGGCAGGAGGAGGGGGAGAGGATACAGAA GGTCGCGGAGGTGGAGGAGAGTTGTCAAGGCTTGGCGGCGGCAGTCGTGA ATGCGGCGGATGCATTGTACCCGCCTCAAATACGGCAAGAGCTCGAATTG CAACTAGGCGCACTGGTGGCCGCAGCAGCGCACACAGCAGCAGCAGTGGG CCGGTTCCCTGCGGGCTCGGCTTCTAGAAACTGCCAAGAGGAGATGGAGA AAGTGCGGAGGGCCGCAGCGCGTGGTGTGGCGGAGGGAACGGAAGGCGAG GAGGAGGATGAGGAGAAAGGGGAGGATGAAGAGGCTGGTGGAGAGGTCTC ATCTTGA back to top
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