NO10G02870.1, NO10G02870.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G02870.1
Unique NameNO10G02870.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3244
Alignment locationchr10:786203..789866 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:786203..789866 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO10G02870.1 vs.
Match: EWM25521.1 (hypothetical protein Naga_100032g38 [Nannochloropsis gaditana])

HSP 1 Score: 318.9 bits (816), Expect = 2.300e-83
Identity = 184/320 (57.50%), Postives = 228/320 (71.25%), Query Frame = 0
Query:    1 MATTCFPHVELKNLGNHLAKLRAATTAFPAAPPSSVQWKTTPALQDTLTRLSLCGERVRDTATKFSLVLSSTTGGPGIKAISNEMRQSCDSLLAALAALVDPAVGGTAAARAGAGAGAPLMELYCQQTRAVLRATEDLIKHITSVSSNLLSSPTPRQSPLGVQTELAPKTGVVWEQCDKLGKLPRCNKVAFRRAFFNHYSAVKDTLREFEELLQEEAEEERTEGEEEEEEDDDLVEGVQDIELTGEEDEEGDFFG--GERRMKEWERENVKRCLVALGHCGEMIKRVLDTVDEAMTEEGGEGGEGGREEGQEEGERIQKV 319
            MAT  FP V L+ LG HL+KLRAATT+ P AP +S+QW  +PALQD L  L+  G+RVRDTATKFSLVL++TT GPGIK+I +EMRQSCDSLLAALA LV PA+G          AG PLMELYCQQ R++LRA E+L++HI S  S LLS+P P +SP GV+ ELAPKTGVVW+QC++L KLPR N+VA+RRAF  H SAVKDTLREF E+L E  ++  TE EEE++E+++  EG    E+   E EE  F+G  G   M+EWE+EN+ RCLV LGHCGEM+K  L+ V+E          EGG  E + EG   +KV
Sbjct:    1 MATASFPLVTLEALGRHLSKLRAATTSLPPAPLTSLQWTASPALQDALKLLTDSGDRVRDTATKFSLVLTTTTSGPGIKSICDEMRQSCDSLLAALALLVGPAIG----------AGGPLMELYCQQVRSILRAIEELLRHIASPDSKLLSAPRPLRSPEGVKDELAPKTGVVWQQCEELKKLPRSNRVAYRRAFLTHQSAVKDTLREFREMLAEAEDDAGTESEEEDDEEEEGEEGGLAGEMADLELEEA-FWGENGGGAMREWEKENLSRCLVPLGHCGEMVKGFLEAVEEVAM-------EGGGRERRREGNTQEKV 302          
The following BLAST results are available for this feature:
BLAST of NO10G02870.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25521.12.300e-8357.50hypothetical protein Naga_100032g38 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G02870NO10G02870Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G02870.1NO10G02870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G02870.1.cds1NO10G02870.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G02870.1.cds2NO10G02870.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G02870.1.cds3NO10G02870.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G02870.1 ID=NO10G02870.1|Name=NO10G02870.1|organism=Nannochloropsis oceanica|type=mRNA|length=3244bp
CCCGCCCTCTCCCCTCGCCTCCATGATGGAATGGACCACCAAGAAGGTCA
GTGAAGACCTAACAATAAACACAAGTAAATTTCCACAACACGCAGCCAAC
ACACTCCGCCGGACAGGGCTGGAGCTGTCCAAAAAATACAAAAACAAGGG
CCCAAATGCCGCCACCACATGAAACAACGTCCCAAGCGCTTGACTGCAAA
TCCACAAATGACTCGTCACCAACCATCGGATCCGCTCACTTGCCTCCTCC
GCCTCCGCCGCGTGACTGACCCGGACGAGCCGTCTCCACAACTTGCACCT
CGCAGGGGCCTGCAGCAGCTGCAGCACCAACTGCAGACACAGCCAATGCC
ACGCTGTTCTCTCATAGAACGTATCCCCCCCCGCGCCGAAACTTGCCGCT
GCCTCTAGCTGAAGCATCACCCCTCCGATCCAGCAATACAACAGAGCCCT
TAGATAGGCAGCAGCAGCGTATGGCTGCAACCGAAAGATCTCCACCAAGT
AAGCATTGGAACCATCCCCGTCCTCCCCCCTTTCCTCCCTTGTGCTCATC
CCTCCTTCCATCAGGAAACCGGCGGCCGAGCGCCATGCATCGGCGGAGGG
TGGGGTGCGAATGAAAAGTCCCTGCAAGCCAAGCAGAGAGAAAGGCGCAC
GCAAACAGGGGCGAGGACCAATTCCCGTTAACGCACGAGAGTAAGAGCGG
GCGTAGGAGCGAGAGAGAGGCGAGCAGGGACGGCAGGGGCAGCGTTCGAT
GTAATGGTGGAAGATTTTATAGTGACCCAAAAGACGAGCTTTATGAACCC
AGATGAGGGTGCGGAGCTGTAGGAGGGAATAAGGGAAGTAGAAAGGAAGG
GGCAGTGAGTGTAATATGATGAAAGTAGCTTGTTGATAGGGAGCAAGGGC
GTGTAGATCTAGCGCGGGGATGGACGGGGAAATGAAGGTGTGAATGCATA
CATGATGGGAGAGAGGTTCTAGAAGAAAGGAAGGAAAAGGACCCGATTCT
TCATCTCTCACAAGCACGAAAAGACAACACGGGAGCAGAATCAAAAAGAT
TCAATACGTGGAAGGTCCGATTCGGGCAATCAAGGCCGATAGATTCGCTG
CTCGCTACAGGAGAGGGAGGGACGAAAAAGGGAACGGCCGGGTGCTCGCG
CCCAAGGCACTACCCACACACGCTTGTACACACGCACGCATATGTTAAGA
TGCATCCTACGAGTGTCAGTCTCAAATCGCATTGATATGGCACCCTTAAC
GAGTCCTCTCCTCTCACTGCCTCCACTTTCACCTCCTTCCATCAAACCTT
TCTCCCAAACTCACCTTATCCCGAAAGCCTAGTCGATGGAAGCTCGTATA
ATCAATCTCTGCACTGCCAGGCGCGCCTCGCGCGGTCCCCAGCAGCCATT
CAACATCTCCAATTTCTTCCTCCCTCTCCTCCTCGTCGTAGTCCTCCCCT
GCCTGGCCTTCCTGTTGGGGTCGCCCCCCTCTCTGTCGATGCCCAGCCAG
GCCATGTCCGCTGCTCGCGCTCCCGTAGAGCAACTCTCCATCCGACGCCT
CCAGTGTAGACACAGGTCGTGGCCGTCGATACAAGCGTCGCATGGGCGTG
GTGGTGTCGCTGCTGCTGCTGGCGCCCCCGTGATCGTCGTCCGCCATGTC
ACTGTTCTGTTGTAGATGATAGGGGATGAGCTGTTCGTTAGAAATCAGAA
GCACTAGCAGGAATCCGCTAAAACACGGGCCAACCCCCGAACACGCGCCA
ATTACAGACATGGAGCGGCCGAATATTAGAGTGTGGATTTGGCTGTCGCG
CAAGCGGTGAGAAGATCAAAGTTGGGACGACGCACTTCAATTGCAAAGGC
AAAGCCCACACAGAGGGCGATAAGCGTTCCGGCCCTTCGCCACCCCCCCT
GAGCTTGACCACTACCATCTCTCACCCCAGTTCTTTTGAACGCCCAACAA
CACCACCACATCCACCACTATAACTATAGACAGCAGCATGGCTACCACTT
GCTTTCCTCACGTGGAGCTAAAAAATTTGGGCAATCATCTCGCCAAGCTT
CGGGCTGCCACCACCGCATTTCCTGCTGCACCACCCTCATCCGTGCAATG
GAAAACCACCCCTGCTCTTCAAGACACCCTCACCCGCCTTTCTCTCTGTG
GGGAGCGAGTCCGCGATACGGCCACCAAATTTAGCCTCGTTCTTTCAAGC
ACCACCGGTGGCCCAGGCATTAAAGCTATATCTAACGAAATGCGACAAAG
CTGTGATTCTCTTCTCGCCGCTTTGGCAGCCTTAGTCGACCCTGCGGTAG
GAGGAACAGCAGCAGCAAGAGCAGGAGCAGGAGCGGGAGCACCTCTGATG
GAACTCTACTGCCAACAAACTCGGGCCGTTTTAAGAGCAACCGAGGATCT
AATCAAACATATCACTTCTGTCTCTTCCAACCTCCTCTCCTCTCCCACGC
CTCGTCAATCTCCCCTCGGGGTCCAAACCGAGTTGGCCCCGAAGACAGGG
GTGGTGTGGGAGCAATGCGACAAGTTGGGCAAGTTGCCCCGTTGCAACAA
AGTGGCGTTTCGACGCGCTTTTTTCAACCATTATTCGGCGGTTAAAGACA
CATTGAGGGAATTCGAGGAATTGTTGCAGGAGGAGGCAGAGGAAGAACGG
ACGGAGGGCGAGGAGGAGGAGGAGGAGGACGACGATCTGGTAGAGGGGGT
GCAAGACATTGAACTTACAGGAGAGGAGGACGAGGAGGGAGATTTCTTCG
GAGGGGAAAGACGAATGAAAGAGTGGGAGAGAGAGAATGTGAAGAGGTGT
TTGGTTGCCTTGGGGCATTGCGGCGAGATGATCAAGAGGGTTTTAGACAC
CGTGGACGAGGCGATGACGGAGGAGGGAGGGGAGGGAGGGGAGGGAGGAA
GGGAGGAAGGGCAGGAGGAGGGGGAGAGGATACAGAAGGTCGCGGAGGTG
GAGGAGAGTTGTCAAGGCTTGGCGGCGGCAGTCGTGAATGCGGCGGATGC
ATTGTACCCGCCTCAAATACGGCAAGAGCTCGAATTGCAACTAGGCGCAC
TGGTGGCCGCAGCAGCGCACACAGCAGCAGCAGTGGGCCGGTTCCCTGCG
GGCTCGGCTTCTAGAAACTGCCAAGAGGAGATGGAGAAAGTGCGGAGGGC
CGCAGCGCGTGGTGTGGCGGAGGGAACGGAAGGCGAGGAGGAGGATGAGG
AGAAAGGGGAGGATGAAGAGGCTGGTGGAGAGGTCTCATCTTGA
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protein sequence of NO10G02870.1

>NO10G02870.1-protein ID=NO10G02870.1-protein|Name=NO10G02870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=419bp
MATTCFPHVELKNLGNHLAKLRAATTAFPAAPPSSVQWKTTPALQDTLTR
LSLCGERVRDTATKFSLVLSSTTGGPGIKAISNEMRQSCDSLLAALAALV
DPAVGGTAAARAGAGAGAPLMELYCQQTRAVLRATEDLIKHITSVSSNLL
SSPTPRQSPLGVQTELAPKTGVVWEQCDKLGKLPRCNKVAFRRAFFNHYS
AVKDTLREFEELLQEEAEEERTEGEEEEEEDDDLVEGVQDIELTGEEDEE
GDFFGGERRMKEWERENVKRCLVALGHCGEMIKRVLDTVDEAMTEEGGEG
GEGGREEGQEEGERIQKVAEVEESCQGLAAAVVNAADALYPPQIRQELEL
QLGALVAAAAHTAAAVGRFPAGSASRNCQEEMEKVRRAAARGVAEGTEGE
EEDEEKGEDEEAGGEVSS*
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mRNA from alignment at chr10:786203..789866-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G02870.1 ID=NO10G02870.1|Name=NO10G02870.1|organism=Nannochloropsis oceanica|type=mRNA|length=3664bp|location=Sequence derived from alignment at chr10:786203..789866- (Nannochloropsis oceanica)
CCCGCCCTCTCCCCTCGCCTCCATGATGGAATGGACCACCAAGAAGGTCA GTGAAGACCTAACAATAAACACAAGTAAATTTCCACAACACGCAGCCAAC ACACTCCGCCGGACAGGGCTGGAGCTGTCCAAAAAATACAAAAACAAGGG CCCAAATGCCGCCACCACATGAAACAACGTCCCAAGCGCTTGACTGCAAA TCCACAAATGACTCGTCACCAACCATCGGATCCGCTCACTTGCCTCCTCC GCCTCCGCCGCGTGACTGACCCGGACGAGCCGTCTCCACAACTTGCACCT CGCAGGGGCCTGCAGCAGCTGCAGCACCAACTGCAGACACAGCCAATGCC ACGCTGTTCTCTCATAGAACGTATCCCCCCCCGCGCCGAAACTTGCCGCT GCCTCTAGCTGAAGCATCACCCCTCCGATCCAGCAATACAACAGAGCCCT TAGATAGGCAGCAGCAGCGTATGGCTGCAACCGAAAGATCTCCACCAAGT AAGCATTGGAACCATCCCCGTCCTCCCCCCTTTCCTCCCTTGTGCTCATC CCTCCTTCCATCAGGAAACCGGCGGCCGAGCGCCATGCATCGGCGGAGGG TGGGGTGCGAATGAAAAGTCCCTGCAAGCCAAGCAGAGAGAAAGGCGCAC GCAAACAGGGGCGAGGACCAATTCCCGTTAACGCACGAGAGTAAGAGCGG GCGTAGGAGCGAGAGAGAGGCGAGCAGGGACGGCAGGGGCAGCGTTCGAT GTAATGGTGGAAGATTTTATAGTGACCCAAAAGACGAGCTTTATGAACCC AGATGAGGGTGCGGAGCTGTAGGAGGGAATAAGGGAAGTAGAAAGGAAGG GGCAGTGAGTGTAATATGATGAAAGTAGCTTGTTGATAGGGAGCAAGGGC GTGTAGATCTAGCGCGGGGATGGACGGGGAAATGAAGGTGTGAATGCATA CATGATGGGAGAGAGGTTCTAGAAGAAAGGAAGGAAAAGGACCCGATTCT TCATCTCTCACAAGCACGAAAAGACAACACGGGAGCAGAATCAAAAAGAT TCAATACGTGGAAGGTCCGATTCGGGCAATCAAGGCCGATAGATTCGCTG CTCGCTACAGGAGAGGGAGGGACGAAAAAGGGAACGGCCGGGTGCTCGCG CCCAAGGCACTACCCACACACGCTTGTACACACGCACGCATATGTTAAGA TGCATCCTACGAGTGTCAGTCTCAAATCGCATTGATATGGCACCCTTAAC GAGTCCTCTCCTCTCACTGCCTCCACTTTCACCTCCTTCCATCAAACCTT TCTCCCAAACTCACCTTATCCCGAAAGCCTAGTCGATGGAAGCTCGTATA ATCAATCTCTGCACTGCCAGGCGCGCCTCGCGCGGTCCCCAGCAGCCATT CAACATCTCCAATTTCTTCCTCCCTCTCCTCCTCGTCGTAGTCCTCCCCT GCCTGGCCTTCCTGTTGGGGTCGCCCCCCTCTCTGTCGATGCCCAGCCAG GCCATGTCCGCTGCTCGCGCTCCCGTAGAGCAACTCTCCATCCGACGCCT CCAGTGTAGACACAGGTCGTGGCCGTCGATACAAGCGTCGCATGGGCGTG GTGGTGTCGCTGCTGCTGCTGGCGCCCCCGTGATCGTCGTCCGCCATGTC ACTGTTCTGTTGTAGATGATAGGGGATGAGCTGTTCGTTAGAAATCAGAA GCACTAGCAGGAATCCGCTAAAACACGGGCCAACCCCCGAACACGCGCCA ATTACAGACATGGAGCGGCCGAATATTAGAGTGTGGATTTGGCTGTCGCG CAAGCGGTGAGAAGATCAAAGTTGGGACGACGCACTTCAATTGCAAAGGC AAAGCCCACACAGAGGGCGATAAGCGTTCCGGCCCTTCGCCACCCCCCCT GAGCTTGACCACTACCATCTCTCACCCCAGTTCTTTTGAACGCCCAACAA CACCACCACATCCACCACTATAACTATAGACAGCAGCATGGCTACCACTT GCTTTCCTCACGTGGAGCTAAAAAATTTGGGCAATCATCTCGCCAAGCTT CGGGTACGTCTAGAAATGGAGGCACGGGGGCAATTGTGAGGAAAATGATA CTCCGCAGTTTAAGACGCCTTTCGCCCCTAATCTGGCACCGATACACGCA CAATCATCTCCAAAAATGTATGCATATACGAAAAAGTGTCAATGCTTGCC CACAGCGTTCGATTCTATTCCTCTATTGCTGGTCATCGCAGCACGCTATA GCCTCCCAACCCCCCTATCCCCTATTTCCCCTATTTCTGGCCTGCCCCTG TCTCCATCTCACACATGTTCCGCACATACACAACTTGTAGGCTGCCACCA CCGCATTTCCTGCTGCACCACCCTCATCCGTGCAATGGAAAACCACCCCT GCTCTTCAAGACACCCTCACCCGCCTTTCTCTCTGTGGGGAGCGAGTCCG CGATACGGCCACCAAATTTAGCCTCGTTCTTTCAAGCACCACCGGTGGCC CAGGCATTAAAGCTATATCTAACGAAATGCGACAAAGCTGTGATTCTCTT CTCGCCGCTTTGGCAGCCTTAGTCGACCCTGCGGTAGGAGGAACAGCAGC AGCAAGAGCAGGAGCAGGAGCGGGAGCACCTCTGATGGAACTCTACTGCC AACAAACTCGGGCCGTTTTAAGAGCAACCGAGGATCTAATCAAACATATC ACTTCTGTCTCTTCCAACCTCCTCTCCTCTCCCACGCCTCGTCAATCTCC CCTCGGGGTCCAAACCGAGTTGGCCCCGAAGACAGGGGTGGTGTGGGAGC AATGCGACAAGTTGGGCAAGTTGCCCCGTTGCAACAAAGTGGCGTTTCGA CGCGCTTTTTTCAACCATTATTCGGCGGTTAAAGACACATTGAGGGAATT CGAGGAATTGTTGCAGGAGGAGGCAGAGGAAGAACGGACGGAGGGCGAGG AGGAGGAGGAGGAGGACGACGATCTGGTAGAGGGGGTGCAAGACATTGAA CTTACAGGAGAGGAGGACGAGGAGGGAGATTTCTTCGGAGGGGAAAGACG AATGAAAGAGTGGGAGAGAGAGAATGTGAAGAGGTGTTTGGTTGCCTTGG GGCATTGCGGCGAGATGATCAAGAGGGTTTTAGACACCGTGGACGAGGCG ATGACGGAGGAGGGAGGGGAGGGAGGGGAGGGAGGAAGGGAGGAAGGGCA GGAGGAGGGGGAGAGGATACAGAAGGTCGCGGAGGTGGAGGAGAGTTGTC AAGGCTTGGCGGCGGCAGTCGTGAATGCGGCGGATGCATTGTACCCGCCT CAAGTAGGAAAGGGAGGGAGGGAGGGGGGGAGCATTGGTTCATTATCCAT ATGTGTCTTCAAGAGAGATACAAAAATGTGCATTTGGGCTGGCCCATCTC ACCTTCATTTCCTCCTTTCCTCTTCCCCGCTCTTAGATACGGCAAGAGCT CGAATTGCAACTAGGCGCACTGGTGGCCGCAGCAGCGCACACAGCAGCAG CAGTGGGCCGGTTCCCTGCGGGCTCGGCTTCTAGAAACTGCCAAGAGGAG ATGGAGAAAGTGCGGAGGGCCGCAGCGCGTGGTGTGGCGGAGGGAACGGA AGGCGAGGAGGAGGATGAGGAGAAAGGGGAGGATGAAGAGGCTGGTGGAG AGGTCTCATCTTGA
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Coding sequence (CDS) from alignment at chr10:786203..789866-

>NO10G02870.1 ID=NO10G02870.1|Name=NO10G02870.1|organism=Nannochloropsis oceanica|type=CDS|length=1257bp|location=Sequence derived from alignment at chr10:786203..789866- (Nannochloropsis oceanica)
ATGGCTACCACTTGCTTTCCTCACGTGGAGCTAAAAAATTTGGGCAATCA
TCTCGCCAAGCTTCGGGCTGCCACCACCGCATTTCCTGCTGCACCACCCT
CATCCGTGCAATGGAAAACCACCCCTGCTCTTCAAGACACCCTCACCCGC
CTTTCTCTCTGTGGGGAGCGAGTCCGCGATACGGCCACCAAATTTAGCCT
CGTTCTTTCAAGCACCACCGGTGGCCCAGGCATTAAAGCTATATCTAACG
AAATGCGACAAAGCTGTGATTCTCTTCTCGCCGCTTTGGCAGCCTTAGTC
GACCCTGCGGTAGGAGGAACAGCAGCAGCAAGAGCAGGAGCAGGAGCGGG
AGCACCTCTGATGGAACTCTACTGCCAACAAACTCGGGCCGTTTTAAGAG
CAACCGAGGATCTAATCAAACATATCACTTCTGTCTCTTCCAACCTCCTC
TCCTCTCCCACGCCTCGTCAATCTCCCCTCGGGGTCCAAACCGAGTTGGC
CCCGAAGACAGGGGTGGTGTGGGAGCAATGCGACAAGTTGGGCAAGTTGC
CCCGTTGCAACAAAGTGGCGTTTCGACGCGCTTTTTTCAACCATTATTCG
GCGGTTAAAGACACATTGAGGGAATTCGAGGAATTGTTGCAGGAGGAGGC
AGAGGAAGAACGGACGGAGGGCGAGGAGGAGGAGGAGGAGGACGACGATC
TGGTAGAGGGGGTGCAAGACATTGAACTTACAGGAGAGGAGGACGAGGAG
GGAGATTTCTTCGGAGGGGAAAGACGAATGAAAGAGTGGGAGAGAGAGAA
TGTGAAGAGGTGTTTGGTTGCCTTGGGGCATTGCGGCGAGATGATCAAGA
GGGTTTTAGACACCGTGGACGAGGCGATGACGGAGGAGGGAGGGGAGGGA
GGGGAGGGAGGAAGGGAGGAAGGGCAGGAGGAGGGGGAGAGGATACAGAA
GGTCGCGGAGGTGGAGGAGAGTTGTCAAGGCTTGGCGGCGGCAGTCGTGA
ATGCGGCGGATGCATTGTACCCGCCTCAAATACGGCAAGAGCTCGAATTG
CAACTAGGCGCACTGGTGGCCGCAGCAGCGCACACAGCAGCAGCAGTGGG
CCGGTTCCCTGCGGGCTCGGCTTCTAGAAACTGCCAAGAGGAGATGGAGA
AAGTGCGGAGGGCCGCAGCGCGTGGTGTGGCGGAGGGAACGGAAGGCGAG
GAGGAGGATGAGGAGAAAGGGGAGGATGAAGAGGCTGGTGGAGAGGTCTC
ATCTTGA
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Synonyms
Publications