NO10G02660, NO10G02660 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO10G02660 vs. NCBI_GenBank
Match: XP_006346438.1 (PREDICTED: upstream activation factor subunit spp27-like isoform X1 [Solanum tuberosum]) HSP 1 Score: 125.9 bits (315), Expect = 1.800e-25 Identity = 76/240 (31.67%), Postives = 115/240 (47.92%), Query Frame = 0 Query: 22 KKAGGYNKEQAWSEEMTAFLGRGYMSRPQVTKHVWDYIKEKDLQNPADRRVILCDPVLKSLFGGVEKINMFKMPKAINKHVRHDDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEDRNGAPAKQGGGRGF--PQEKISKELQAL-IGKETASRNEVVKKLWEHIKANDMQDPSNRMNILCDETFKRILGVDSCHGFKMNKLLAPHFLGR 259 KK GG+NK A S ++ +G + RP+V K +W YI+EK+LQNP ++R ILCD VL +F V+ I+MF+M K ++KH+ E + ++GGG GF P + ++ L IG+ R +V+K++W++IK N++QDPS++ I+CDE K + VDS HGF + KLL HF+ R Sbjct: 131 KKKGGFNKPCALSPQLQKLVGEPELGRPEVVKKIWAYIREKNLQNPENKRKILCDEVLSGIF-QVKSIDMFQMNKVLSKHI-----------------------------------WPLNEENGTQVKTSVKRRLPKKGREEALDEPKQKEKRQKGGGFGFLAPVQLSDALVKFLGIGENALPRADVIKRIWQYIKENELQDPSDKKTIICDERLKELFQVDSFHGFTVTKLLTAHFIKR 334
BLAST of NO10G02660 vs. NCBI_GenBank
Match: XP_015062145.1 (PREDICTED: upstream activation factor subunit spp27 isoform X1 [Solanum pennellii]) HSP 1 Score: 125.9 bits (315), Expect = 1.800e-25 Identity = 79/257 (30.74%), Postives = 121/257 (47.08%), Query Frame = 0 Query: 5 KREVEEGKEEEDMPVAKKKAGGYNKEQAWSEEMTAFLGRGYMSRPQVTKHVWDYIKEKDLQNPADRRVILCDPVLKSLFGGVEKINMFKMPKAINKHVRHDDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEDRNGAPAKQGGGRGF-PQEKISKELQALIG--KETASRNEVVKKLWEHIKANDMQDPSNRMNILCDETFKRILGVDSCHGFKMNKLLAPHFLGR 259 KR ++ + E M KK GG+NK A S ++ +G + RP+V K +W YI+EK+LQNP ++R ILCD VL +F V+ I+MF+M K ++KH+ E + ++GGG GF ++S L +G + R +V+K++W++IK N++QDPS++ I+CDE K + VDS HGF + KLL HF+ R Sbjct: 112 KRAKKKPRRSEKMNGEAKKKGGFNKPCALSPQLQKLVGEPELGRPEVVKKIWAYIREKNLQNPENKRKILCDEVLSGIF-QVKSIDMFQMNKVLSKHI-----------------------------------WPLNEENGTQVKTSVKRRLPKKGREEASDEPKQKEKRQKGGGSGFLAPVQLSDALVKFLGIDENALPRADVIKRIWQYIKENELQDPSDKKTIICDERLKELFQVDSFHGFTVTKLLTAHFIKR 332
BLAST of NO10G02660 vs. NCBI_GenBank
Match: ESQ47991.1 (hypothetical protein EUTSA_v10020944mg [Eutrema salsugineum]) HSP 1 Score: 125.2 bits (313), Expect = 3.000e-25 Identity = 130/237 (54.85%), Postives = 162/237 (68.35%), Query Frame = 0 Query: 20 AKKKAGGYNKEQAWSEEMTAFLGRGYMSRPQVTKHVWDYIKEKDLQNPADRRVILCDPVLKSLFGGVEKINMFKMPKAINKHV--RHDDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEDRNGAPAKQGGGRGFPQEKISKELQALIGKETASRNEVVKKLWEHIKANDMQDPSNRMNILCDETFKRILGVDSCHGFKMNKLLAPH 255 AKK+A G+ K S ++ FLG ++R +VTK +W YIKEKDLQ+P DRR ILCD L SLF V+ INMF+M KA+ KH+ D XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX D+ P ++GGG +S ELQA G +R EV K LW +IK N++QDP+++ I+CDE+ + + +S + F+M+KLL H Sbjct: 113 AKKRASGFTKVCQLSPQLEKFLGTSQLARTEVTKKLWAYIKEKDLQDPKDRRKILCDESLHSLF-RVKSINMFQMSKALTKHIWPLGDGDGCVNSVKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDK---PKRKGGGGFAKVCSLSPELQAFTGVTELARTEVTKMLWSYIKENNLQDPNDKRTIICDESLRSLFTFESVNMFQMSKLLTKH 345
BLAST of NO10G02660 vs. NCBI_GenBank
Match: OVA10503.1 (SWIB/MDM2 domain [Macleaya cordata]) HSP 1 Score: 125.2 bits (313), Expect = 3.000e-25 Identity = 84/239 (35.15%), Postives = 120/239 (50.21%), Query Frame = 0 Query: 21 KKKAGGYNKEQAWSEEMTAFLGRGYMSRPQVTKHVWDYIKEKDLQNPADRRVILCDPVLKSLFGGVEKINMFKMPKAINKHVRHDDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEDRNGAPAKQGGGRGF-PQEKISKELQALIGK-ETA-SRNEVVKKLWEHIKANDMQDPSNRMNILCDETFKRILGVDSCHGFKMNKLLAPHFL 257 KK+ GG+ K + S ++ F+G ++R +V K +W YI+EKDLQ+P +RR ILCD L+ LF V+ INMF+M KA++KH+ KE R +++GGG GF ++S L IG ETA SR EVVKK+WE+IK N++QDPS++ I+CD+ K + VDS +GF + KLL HF+ Sbjct: 49 KKRGGGFTKLCSLSPQLQKFVGVPELARTEVVKQLWAYIREKDLQDPKNRRNILCDEALRDLF-RVDTINMFQMNKALSKHI-----------------------------WPLESEEGIAFKFLMSLSSIYKLEAYQSPDEPKPKEKRQ--KSQKGGGSGFLAPLQLSDALVKFIGTGETALSRAEVVKKMWEYIKQNNLQDPSDKRRIICDDKLKELFDVDSFNGFTVPKLLTVHFV 255
BLAST of NO10G02660 vs. NCBI_GenBank
Match: XP_024015787.1 (DNA ligase 1 isoform X2 [Eutrema salsugineum]) HSP 1 Score: 125.2 bits (313), Expect = 3.000e-25 Identity = 130/237 (54.85%), Postives = 162/237 (68.35%), Query Frame = 0 Query: 20 AKKKAGGYNKEQAWSEEMTAFLGRGYMSRPQVTKHVWDYIKEKDLQNPADRRVILCDPVLKSLFGGVEKINMFKMPKAINKHV--RHDDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEDRNGAPAKQGGGRGFPQEKISKELQALIGKETASRNEVVKKLWEHIKANDMQDPSNRMNILCDETFKRILGVDSCHGFKMNKLLAPH 255 AKK+A G+ K S ++ FLG ++R +VTK +W YIKEKDLQ+P DRR ILCD L SLF V+ INMF+M KA+ KH+ D XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX D+ P ++GGG +S ELQA G +R EV K LW +IK N++QDP+++ I+CDE+ + + +S + F+M+KLL H Sbjct: 22 AKKRASGFTKVCQLSPQLEKFLGTSQLARTEVTKKLWAYIKEKDLQDPKDRRKILCDESLHSLF-RVKSINMFQMSKALTKHIWPLGDGDGCVNSVKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDK---PKRKGGGGFAKVCSLSPELQAFTGVTELARTEVTKMLWSYIKENNLQDPNDKRTIICDESLRSLFTFESVNMFQMSKLLTKH 254
BLAST of NO10G02660 vs. NCBI_GenBank
Match: XP_024015786.1 (DNA ligase 1 isoform X1 [Eutrema salsugineum]) HSP 1 Score: 125.2 bits (313), Expect = 3.000e-25 Identity = 130/237 (54.85%), Postives = 162/237 (68.35%), Query Frame = 0 Query: 20 AKKKAGGYNKEQAWSEEMTAFLGRGYMSRPQVTKHVWDYIKEKDLQNPADRRVILCDPVLKSLFGGVEKINMFKMPKAINKHV--RHDDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEDRNGAPAKQGGGRGFPQEKISKELQALIGKETASRNEVVKKLWEHIKANDMQDPSNRMNILCDETFKRILGVDSCHGFKMNKLLAPH 255 AKK+A G+ K S ++ FLG ++R +VTK +W YIKEKDLQ+P DRR ILCD L SLF V+ INMF+M KA+ KH+ D XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX D+ P ++GGG +S ELQA G +R EV K LW +IK N++QDP+++ I+CDE+ + + +S + F+M+KLL H Sbjct: 113 AKKRASGFTKVCQLSPQLEKFLGTSQLARTEVTKKLWAYIKEKDLQDPKDRRKILCDESLHSLF-RVKSINMFQMSKALTKHIWPLGDGDGCVNSVKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDK---PKRKGGGGFAKVCSLSPELQAFTGVTELARTEVTKMLWSYIKENNLQDPNDKRTIICDESLRSLFTFESVNMFQMSKLLTKH 345
BLAST of NO10G02660 vs. NCBI_GenBank
Match: XP_003611801.2 (upstream activation factor subunit spp27 [Medicago truncatula] >AES94759.2 upstream activation factor subunit UAF30, putative [Medicago truncatula]) HSP 1 Score: 124.8 bits (312), Expect = 3.900e-25 Identity = 99/224 (44.20%), Postives = 134/224 (59.82%), Query Frame = 0 Query: 34 SEEMTAFLGRGYMSRPQVTKHVWDYIKEKDLQNPADRRVILCDPVLKSLFGGVEKINMFKMPKAINKHVRHDDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEDRNGAPAKQGGGRGF-PQEKISKELQALIGKETASRNEVVKKLWEHIKANDMQDPSNRMNILCDETFKRILGVDSCHGFKMNKLLAPHFL 257 S ++ F+G M+R +V K +W YI+EKDLQ+P +RR I+CD L++LF GV+ INMF+M K + KH+ D XXXXXXXXXXXXXXXXXXXXXXX KE R K G G+GF ++S L +G+ SR++V+K++W++IK N++QDPS++ ILCDE K + VDS GF + KLLAPHF+ Sbjct: 139 SPQLQEFVGAPEMARTEVVKQLWAYIREKDLQDPNNRRNIICDEPLRALF-GVDTINMFQMNKVLAKHIWPLD-----------------SDDVIQVKSAPKXXXXXXXXXXXXXXXXXXXXXXXDLDEPKGKEKRQ----KVGSGKGFLAPLQLSDALAKFLGESELSRSDVIKRMWDYIKGNNLQDPSDKRQILCDEKLKELFDVDSFVGFTVTKLLAPHFI 340
BLAST of NO10G02660 vs. NCBI_GenBank
Match: XP_015062152.1 (PREDICTED: upstream activation factor subunit spp27 isoform X2 [Solanum pennellii]) HSP 1 Score: 124.8 bits (312), Expect = 3.900e-25 Identity = 81/258 (31.40%), Postives = 124/258 (48.06%), Query Frame = 0 Query: 4 AKREVEEGKEEEDMPVAKKKAGGYNKEQAWSEEMTAFLGRGYMSRPQVTKHVWDYIKEKDLQNPADRRVILCDPVLKSLFGGVEKINMFKMPKAINKHVRHDDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEDRNGAPAKQGGGRGF-PQEKISKELQALIG--KETASRNEVVKKLWEHIKANDMQDPSNRMNILCDETFKRILGVDSCHGFKMNKLLAPHFLGR 259 AKR ++ + E+ AKKK GG+NK A S ++ +G + RP+V K +W YI+EK+LQNP ++R ILCD VL +F V+ I+MF+M K ++KH+ E + ++GGG GF ++S L +G + R +V+K++W++IK N++QDPS++ I+CDE K + VDS HGF + KLL HF+ R Sbjct: 111 AKRAKKKPRSEKMNGEAKKK-GGFNKPCALSPQLQKLVGEPELGRPEVVKKIWAYIREKNLQNPENKRKILCDEVLSGIF-QVKSIDMFQMNKVLSKHI-----------------------------------WPLNEENGTQVKTSVKRRLPKKGREEASDEPKQKEKRQKGGGSGFLAPVQLSDALVKFLGIDENALPRADVIKRIWQYIKENELQDPSDKKTIICDERLKELFQVDSFHGFTVTKLLTAHFIKR 331
BLAST of NO10G02660 vs. NCBI_GenBank
Match: OIW10965.1 (hypothetical protein TanjilG_22772 [Lupinus angustifolius]) HSP 1 Score: 124.8 bits (312), Expect = 3.900e-25 Identity = 79/241 (32.78%), Postives = 120/241 (49.79%), Query Frame = 0 Query: 19 VAKKKAGGYNKEQAWSEEMTAFLGRGYMSRPQVTKHVWDYIKEKDLQNPADRRVILCDPVLKSLFGGVEKINMFKMPKAINKHVRHDDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEDRNGAPAKQGGGRGF-PQEKISKELQALI--GKETASRNEVVKKLWEHIKANDMQDPSNRMNILCDETFKRILGVDSCHGFKMNKLLAPHFL 257 V KK++GG+ K + S ++ +G M+R +V K +W YI+EKDLQ+P +RR I+CD L+++F GV+ INMF+M KA++KH+ D X ++GG GF K+S L + G+ +R EV+KK+W++IK N++QDPS++ ILCDE K + VD+ +GF + KLLAPHF+ Sbjct: 231 VVKKRSGGFCKLCSLSPQLQELMGAPEMARTEVVKQLWAYIREKDLQDPENRRNIICDEPLRAIF-GVKSINMFQMNKALSKHIWPLD------------------------------------------------------SDDDXXXXXXXXXRQKGGKSGFLAPLKLSDALANFLGTGESELTRAEVIKKMWDYIKGNNLQDPSDKRKILCDEKLKELFDVDTFNGFTVTKLLAPHFI 416
BLAST of NO10G02660 vs. NCBI_GenBank
Match: XP_009629951.1 (PREDICTED: upstream activation factor subunit spp27-like isoform X1 [Nicotiana tomentosiformis] >XP_016488352.1 PREDICTED: upstream activation factor subunit spp27-like isoform X1 [Nicotiana tabacum] >XP_018634486.1 PREDICTED: upstream activation factor subunit spp27-like isoform X1 [Nicotiana tomentosiformis]) HSP 1 Score: 124.0 bits (310), Expect = 6.700e-25 Identity = 77/246 (31.30%), Postives = 115/246 (46.75%), Query Frame = 0 Query: 15 EDMPVAKKKAGGYNKEQAWSEEMTAFLGRGYMSRPQVTKHVWDYIKEKDLQNPADRRVILCDPVLKSLFGGVEKINMFKMPKAINKHVRHDDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEDRNGAPAKQGGGRGFPQEKISKELQALI--GKETASRNEVVKKLWEHIKANDMQDPSNRMNILCDETFKRILGVDSCHGFKMNKLLAPHFLGR 259 E M KK GG+NK A S ++ +G + RP+V K +W YI+EK+LQNP ++R ILCD VL +F + I+MF+M K ++KH+ D KE R K+GG ++S L G++ +R +V+K++W++IK N++QDPS++ I+CDE K + VDS HGF + KLL HF+ R Sbjct: 109 EKMNGEAKKKGGFNKPCALSPQLQKLVGESELGRPEVVKKIWAYIREKNLQNPQNKRKILCDEVLSEIF-RAKTIDMFQMNKVLSKHIWPIDE----------------------EDGSFSLTHPASQVKSSVKKRLPKQGREEALDEPKQKEKRQ----KRGGSGFLAPVRLSDALVKFFGNGEKALTRADVIKRIWQYIKENELQDPSDKKTIICDERLKELFQVDSFHGFTVTKLLTAHFIKR 327 The following BLAST results are available for this feature:
BLAST of NO10G02660 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO10G02660 ID=NO10G02660|Name=NO10G02660|organism=Nannochloropsis oceanica|type=gene|length=3230bpback to top protein sequence of NO10G02660.1 >NO10G02660.1-protein ID=NO10G02660.1-protein|Name=NO10G02660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=371bpback to top protein sequence of NO10G02660.2 >NO10G02660.2-protein ID=NO10G02660.2-protein|Name=NO10G02660.2|organism=Nannochloropsis oceanica|type=polypeptide|length=384bpback to top protein sequence of NO10G02660.3 >NO10G02660.3-protein ID=NO10G02660.3-protein|Name=NO10G02660.3|organism=Nannochloropsis oceanica|type=polypeptide|length=260bpback to top Synonyms
Publications
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