NO10G02660.2, NO10G02660.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G02660.2
Unique NameNO10G02660.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3071
Alignment locationchr10:726701..729930 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:726701..729930 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO10G02660.2 vs.
Match: EWM25482.1 (swib mdm2 domain containing protein [Nannochloropsis gaditana])

HSP 1 Score: 252.3 bits (643), Expect = 2.400e-63
Identity = 173/334 (51.80%), Postives = 217/334 (64.97%), Query Frame = 0 
Query:    3 TAQDLEAAIRVILATAKLEDVTQRTLREQLESQFGCGLTEQKNIIKEITIRVLVEREEEIAAQETQEKAAT-KAAIKRE--VDLVPQHSSDDESHDDNSSESDKEIGEIKPKMKKAKREVEEGKEEEDMPVAKKKAGGYNKEQAWSEEMTAFLGRGYMSRPQVTKHVWDYIKEKDLQNPADRRVILCDPVLKSLFGGVEKINMFKMPKAINKHVRHDDREKEEDEDDEDDGENEFDSDDEGDSRKRKASSAAKAKTEKNKKKAAAAATSVRTKTNVKKEDRNGAPAKQGGGRGFPQEKISKELQALIGKETASRNEVVKKLWEHIKANDMQDPS 334
            +A  LE AIR IL TAKLE+VTQRTLREQL  QFGC LT++K +IKE+TI+VL ER+E   A+ +++ A   +A++K E  + LVP   SDDES DD+SS SD E  E K K K A R+ E+ + EE     KKK GG+NKE AWSEEM AFLG GYMSRPQVTK +W+YIK + LQ P DRRVILCD  L+ LF  V  +NMFK+P  INKH+R DDRE+  DE  E           EG    +K  ++ K +  K KK   A                 G PAK+G   GFP EKIS +LQ L+GK TASRNEVVK++W H+K++++QDP+
Sbjct:    7 SASALEDAIRSILETAKLEEVTQRTLREQLAGQFGCDLTDEKALIKELTIQVLSERQEREEAEASRQPAGDGEASVKVEGALGLVP---SDDESRDDSSSSSDSE-EERKVKKKIAGRKKEKSRGEE-----KKKGGGFNKEYAWSEEMAAFLGEGYMSRPQVTKRMWEYIKTQGLQKPEDRRVILCDERLQRLF-SVPSLNMFKLPVMINKHMRQDDREEGADEGRE---------KQEGGEVGKKERASTKPRNPKRKKTGEA-----------------GTPAKRG---GFPPEKISVQLQGLMGKATASRNEVVKEIWTHVKSHNLQDPA 301
The following BLAST results are available for this feature:
BLAST of NO10G02660.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25482.12.400e-6351.80swib mdm2 domain containing protein [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G02660NO10G02660Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G02660.2NO10G02660.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G02660.2.cds1NO10G02660.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G02660.2.cds2NO10G02660.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G02660.2 ID=NO10G02660.2|Name=NO10G02660.2|organism=Nannochloropsis oceanica|type=mRNA|length=3071bp
ACCCTTCTCCCGCACCTCTCCTCCTTCACCCAAACGCTGCAACCGTAGAC
ATGAAGACCCCCCCACAAAATATGCACACAAGGCCTCATCGACCGGTGAG
ATTTGAGCAGGACCAGTAAGCTGCCCTGGACAGTGACAATGCGCCTCGAC
TTCCGCCGTCGGAATGTTCCATTTACACAAATACGACGATGGGCTTCCAC
CTTGTTGATGGTAGGTCACCAAAAGTTTGTCCGCCTGACTGGACCAAGAC
AATCCTGCAATTACGTAATCTACCTCTTCGTCTCCTCGATCCTTGTTTTT
GTTGCTCGCATTGCTGCGCCCCCCTCCTCCTCGATTTCGATTTCGATTGT
TGCTCAGCTGGCGGGTGATCGCCGCAGCGCATGTCCGCACAGGCATGTGC
GCCGGCACATCCAGCTGCAGCGCAGTGTGAGGCAACGTGCTCAAGTCCCA
AATGAGTACTCCGCCTCCTTGCAAGCTGACAGCGGCATACCGGCCTTGGG
GGCTAAAGACGATCTCTGTGTCGACATCCTCCCCCTCCGCGTCCTCATTC
CATACCTTGACCCAAGGATTGTTGTCCGCTAGCAATCGCTGCACCGTGCC
TGTTTCCTCGATGCATCCCGCAGGCTTCTTCTTGTTCTTGTTGGGCGGTT
GAGATGATTGGGCCCACGCCATTGTGCGTACGCTGCTGCTGCCTGCCACG
CGGTGGGCCGATGAGGAAAGAAAGCAAGGGGTTGGAGAGGTTGGAGCCGC
AAGCGTCTTGCAACGGCCTTTGAAAAAGGCTCCAAAATTTCGATAGTCGG
AAGATGAGATGATGCTCCTCCTGTTGGTGAAGGGGAGGACATGATTTCAT
TCAGTAAAAAGCATGGTTGCATACACGTCCGCTCGTGGAAGGAGTGATGC
GCCCCTGGCTGCCTCGCTCGGCAGTTGTGGGGGCTTGAATGAATCGAGCT
CGCAGGGTTGTGCTCCACACCGCACGCACGCTCTAAACCCAGCTTTCTCG
CCTCCTATTCACACCACCGCCACCACTATCACGGCAAGCGCAGGACCGAG
CGTCTTCTATCCAGGCGTGTCCTAAGTCCAAAGCCCCTCCGCCTCGCCCA
TTCAGCCCTATGGCAACTGCCCAGGACCTGGAAGCGGCGATCCGCGTCAT
ATTGGCTACGGCCAAGCTGGAGGATGTGACGCAGCGCACGCTCCGAGAGC
AGCTCGAAAGCCAGTTCGGATGCGGGCTGACCGAACAGAAAAATATCATC
AAAGAGATCACCATCCGCGTCTTGGTCGAGCGAGAGGAAGAAATCGCGGC
ACAAGAGACTCAAGAAAAGGCGGCTACCAAGGCGGCAATCAAGAGGGAAG
TCGATCTGGTCCCCCAACACTCGAGCGACGACGAGAGCCACGATGATAAC
AGCAGCGAGAGCGACAAGGAAATAGGAGAGATAAAACCCAAGATGAAAAA
GGCGAAGCGTGAGGTGGAGGAGGGCAAGGAGGAGGAAGATATGCCCGTAG
CCAAGAAGAAGGCCGGGGGTTACAATAAGGAGCAGGCATGGTCGGAGGAA
ATGACAGCGTTCTTAGGGAGGGGATACATGTCGCGCCCACAGGTGACGAA
GCATGTGTGGGATTATATCAAGGAGAAAGATTTGCAGAACCCGGCGGATC
GACGTGTGATTTTGTGTGACCCGGTTTTGAAGAGTTTGTTTGGAGGGGTG
GAGAAGATAAATATGTTTAAGATGCCCAAGGCAATCAATAAGCATGTAAG
GCATGACGATAGGGAGAAAGAAGAAGATGAGGACGACGAGGATGATGGAG
AGAATGAGTTCGACTCGGATGACGAGGGCGACTCGCGTAAGAGGAAGGCG
AGCTCGGCGGCTAAGGCCAAAACGGAGAAGAATAAGAAAAAGGCTGCAGC
AGCGGCGACATCAGTCAGGACGAAAACGAATGTCAAGAAAGAAGACAGGA
ATGGGGCGCCAGCTAAGCAGGGAGGAGGGAGAGGATTTCCCCAAGAGAAA
ATTTCGAAGGAGCTTCAAGCGTTGATTGGGAAGGAGACGGCGAGTAGAAA
TGAGGTGGTGAAGAAGCTCTGGGAGCATATCAAGGCGAATGACATGCAGG
ACCCTTCGGTAGGTTTTTGGTTTGTGTTATACTATAATAGTTTATGTTAT
TATTATATTATGATTGTGGTAAATTATACAAGGTACGTGGATTTGTGGCA
TAGATTTGGGGGGGGCTGGAGGTTGTTTCTTTTTGACGCGTGTCATGTAT
GTGCCATGTGACGTGCGAAAGGGTTATGGGAGTATAGCGGGCGAAGCCAA
TCACACGCGAGAAGCATCCTTCGGTGTTTCTTAGGTTTGAATAGATGTGG
GAATAAAATGGTTTTACGTGCTTATATTATGTATTTGGAGCTTTATATGT
ATGTTGCCTTTGTCTTTCCCTTTTTTAAACTTGTCTCAAATGCCTCCTAA
CATCCTCCTCCCTCTTCTTCCACATCTTCACAGAACCGTATGAATATTTT
GTGTGACGAGACTTTTAAGAGGATCTTGGGGGTGGATAGCTGTCATGGAT
TCAAGATGAACAAATTGCTGGCTCCTCATTTTCTGGGGCGGGCGTAGAAA
CGGAGAGAAGGAGGGATGGAGGGAGGGAGGTTGGGAAGCTCCTTGAGGGT
GGGAAGCATGGTATGGGGACGGGAAGGGAAACGGGGAAGAGGAAGAGACA
GATGTAGCGGATCTCTTGGTGTGCAGGCTGGATAAGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGAGGGATGTGTGCGACTGCAGTGAGTAAATGGTAAAT
GAGAAAGGTAAATTTTGTATATTAGAAACTTTCTTCCGACGAGGAGAATA
AAAGAAGGAGAAGGAGATTAAGGTCATTGAATATCTAAAAAGAAAAGAAG
AACAATGACAAAAAGAATAAAAGCGTGCACAAGCACAAACACAAGGGCAG
GAAGAGGGCGGCTCACACTCTAATTCCGTTCCTACCCATTTTTTAGAAAA
GTAAGATTTAAATACTGAAATTAAGAATCTGTAGGCCCTCCACTTATGAG
AAGAATAAGAACGAAGGCATG
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protein sequence of NO10G02660.2

>NO10G02660.2-protein ID=NO10G02660.2-protein|Name=NO10G02660.2|organism=Nannochloropsis oceanica|type=polypeptide|length=384bp
MATAQDLEAAIRVILATAKLEDVTQRTLREQLESQFGCGLTEQKNIIKEI
TIRVLVEREEEIAAQETQEKAATKAAIKREVDLVPQHSSDDESHDDNSSE
SDKEIGEIKPKMKKAKREVEEGKEEEDMPVAKKKAGGYNKEQAWSEEMTA
FLGRGYMSRPQVTKHVWDYIKEKDLQNPADRRVILCDPVLKSLFGGVEKI
NMFKMPKAINKHVRHDDREKEEDEDDEDDGENEFDSDDEGDSRKRKASSA
AKAKTEKNKKKAAAAATSVRTKTNVKKEDRNGAPAKQGGGRGFPQEKISK
ELQALIGKETASRNEVVKKLWEHIKANDMQDPSVGFWFVLYYNSLCYYYI
MIVVNYTRYVDLWHRFGGGWRLFLFDACHVCAM*
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mRNA from alignment at chr10:726701..729930+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G02660.2 ID=NO10G02660.2|Name=NO10G02660.2|organism=Nannochloropsis oceanica|type=mRNA|length=3230bp|location=Sequence derived from alignment at chr10:726701..729930+ (Nannochloropsis oceanica)
ACCCTTCTCCCGCACCTCTCCTCCTTCACCCAAACGCTGCAACCGTAGAC
ATGAAGACCCCCCCACAAAATATGCACACAAGGCCTCATCGACCGGTGAG
ATTTGAGCAGGACCAGTAAGCTGCCCTGGACAGTGACAATGCGCCTCGAC
TTCCGCCGTCGGAATGTTCCATTTACACAAATACGACGATGGGCTTCCAC
CTTGTTGATGGTAGGTCACCAAAAGTTTGTCCGCCTGACTGGACCAAGAC
AATCCTGCAATTACGTAATCTACCTCTTCGTCTCCTCGATCCTTGTTTTT
GTTGCTCGCATTGCTGCGCCCCCCTCCTCCTCGATTTCGATTTCGATTGT
TGCTCAGCTGGCGGGTGATCGCCGCAGCGCATGTCCGCACAGGCATGTGC
GCCGGCACATCCAGCTGCAGCGCAGTGTGAGGCAACGTGCTCAAGTCCCA
AATGAGTACTCCGCCTCCTTGCAAGCTGACAGCGGCATACCGGCCTTGGG
GGCTAAAGACGATCTCTGTGTCGACATCCTCCCCCTCCGCGTCCTCATTC
CATACCTTGACCCAAGGATTGTTGTCCGCTAGCAATCGCTGCACCGTGCC
TGTTTCCTCGATGCATCCCGCAGGCTTCTTCTTGTTCTTGTTGGGCGGTT
GAGATGATTGGGCCCACGCCATTGTGCGTACGCTGCTGCTGCCTGCCACG
CGGTGGGCCGATGAGGAAAGAAAGCAAGGGGTTGGAGAGGTTGGAGCCGC
AAGCGTCTTGCAACGGCCTTTGAAAAAGGCTCCAAAATTTCGATAGTCGG
AAGATGAGATGATGCTCCTCCTGTTGGTGAAGGGGAGGACATGATTTCAT
TCAGTAAAAAGCATGGTTGCATACACGTCCGCTCGTGGAAGGAGTGATGC
GCCCCTGGCTGCCTCGCTCGGCAGTTGTGGGGGCTTGAATGAATCGAGCT
CGCAGGGTTGTGCTCCACACCGCACGCACGCTCTAAACCCAGCTTTCTCG
CCTCCTATTCACACCACCGCCACCACTATCACGGCAAGCGCAGGACCGAG
CGTCTTCTATCCAGGCGTGTCCTAAGTCCAAAGCCCCTCCGCCTCGCCCA
TTCAGCCCTATGGCAACTGCCCAGGACCTGGAAGCGGCGATCCGCGTCAT
ATTGGCTACGGCCAAGCTGGAGGATGTGACGCAGCGCACGCTCCGAGAGC
AGGTACGTAGAGTGGGAGTATAGATATCGATGGGAAGGGGGGGGGCATCG
TCCTGTTTGCCTTCATTATTTGAACCTCGTAATTTTGTAGACCAATCTCT
GAATCCTGGAGCCACCACACACCACATCACACCATAACGCGCCCCTAACG
AACCCACATAGCTCGAAAGCCAGTTCGGATGCGGGCTGACCGAACAGAAA
AATATCATCAAAGAGATCACCATCCGCGTCTTGGTCGAGCGAGAGGAAGA
AATCGCGGCACAAGAGACTCAAGAAAAGGCGGCTACCAAGGCGGCAATCA
AGAGGGAAGTCGATCTGGTCCCCCAACACTCGAGCGACGACGAGAGCCAC
GATGATAACAGCAGCGAGAGCGACAAGGAAATAGGAGAGATAAAACCCAA
GATGAAAAAGGCGAAGCGTGAGGTGGAGGAGGGCAAGGAGGAGGAAGATA
TGCCCGTAGCCAAGAAGAAGGCCGGGGGTTACAATAAGGAGCAGGCATGG
TCGGAGGAAATGACAGCGTTCTTAGGGAGGGGATACATGTCGCGCCCACA
GGTGACGAAGCATGTGTGGGATTATATCAAGGAGAAAGATTTGCAGAACC
CGGCGGATCGACGTGTGATTTTGTGTGACCCGGTTTTGAAGAGTTTGTTT
GGAGGGGTGGAGAAGATAAATATGTTTAAGATGCCCAAGGCAATCAATAA
GCATGTAAGGCATGACGATAGGGAGAAAGAAGAAGATGAGGACGACGAGG
ATGATGGAGAGAATGAGTTCGACTCGGATGACGAGGGCGACTCGCGTAAG
AGGAAGGCGAGCTCGGCGGCTAAGGCCAAAACGGAGAAGAATAAGAAAAA
GGCTGCAGCAGCGGCGACATCAGTCAGGACGAAAACGAATGTCAAGAAAG
AAGACAGGAATGGGGCGCCAGCTAAGCAGGGAGGAGGGAGAGGATTTCCC
CAAGAGAAAATTTCGAAGGAGCTTCAAGCGTTGATTGGGAAGGAGACGGC
GAGTAGAAATGAGGTGGTGAAGAAGCTCTGGGAGCATATCAAGGCGAATG
ACATGCAGGACCCTTCGGTAGGTTTTTGGTTTGTGTTATACTATAATAGT
TTATGTTATTATTATATTATGATTGTGGTAAATTATACAAGGTACGTGGA
TTTGTGGCATAGATTTGGGGGGGGCTGGAGGTTGTTTCTTTTTGACGCGT
GTCATGTATGTGCCATGTGACGTGCGAAAGGGTTATGGGAGTATAGCGGG
CGAAGCCAATCACACGCGAGAAGCATCCTTCGGTGTTTCTTAGGTTTGAA
TAGATGTGGGAATAAAATGGTTTTACGTGCTTATATTATGTATTTGGAGC
TTTATATGTATGTTGCCTTTGTCTTTCCCTTTTTTAAACTTGTCTCAAAT
GCCTCCTAACATCCTCCTCCCTCTTCTTCCACATCTTCACAGAACCGTAT
GAATATTTTGTGTGACGAGACTTTTAAGAGGATCTTGGGGGTGGATAGCT
GTCATGGATTCAAGATGAACAAATTGCTGGCTCCTCATTTTCTGGGGCGG
GCGTAGAAACGGAGAGAAGGAGGGATGGAGGGAGGGAGGTTGGGAAGCTC
CTTGAGGGTGGGAAGCATGGTATGGGGACGGGAAGGGAAACGGGGAAGAG
GAAGAGACAGATGTAGCGGATCTCTTGGTGTGCAGGCTGGATAAGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGAGGGATGTGTGCGACTGCAGTGAGTAA
ATGGTAAATGAGAAAGGTAAATTTTGTATATTAGAAACTTTCTTCCGACG
AGGAGAATAAAAGAAGGAGAAGGAGATTAAGGTCATTGAATATCTAAAAA
GAAAAGAAGAACAATGACAAAAAGAATAAAAGCGTGCACAAGCACAAACA
CAAGGGCAGGAAGAGGGCGGCTCACACTCTAATTCCGTTCCTACCCATTT
TTTAGAAAAGTAAGATTTAAATACTGAAATTAAGAATCTGTAGGCCCTCC
ACTTATGAGAAGAATAAGAACGAAGGCATG
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Coding sequence (CDS) from alignment at chr10:726701..729930+

>NO10G02660.2 ID=NO10G02660.2|Name=NO10G02660.2|organism=Nannochloropsis oceanica|type=CDS|length=1152bp|location=Sequence derived from alignment at chr10:726701..729930+ (Nannochloropsis oceanica)
ATGGCAACTGCCCAGGACCTGGAAGCGGCGATCCGCGTCATATTGGCTAC
GGCCAAGCTGGAGGATGTGACGCAGCGCACGCTCCGAGAGCAGCTCGAAA
GCCAGTTCGGATGCGGGCTGACCGAACAGAAAAATATCATCAAAGAGATC
ACCATCCGCGTCTTGGTCGAGCGAGAGGAAGAAATCGCGGCACAAGAGAC
TCAAGAAAAGGCGGCTACCAAGGCGGCAATCAAGAGGGAAGTCGATCTGG
TCCCCCAACACTCGAGCGACGACGAGAGCCACGATGATAACAGCAGCGAG
AGCGACAAGGAAATAGGAGAGATAAAACCCAAGATGAAAAAGGCGAAGCG
TGAGGTGGAGGAGGGCAAGGAGGAGGAAGATATGCCCGTAGCCAAGAAGA
AGGCCGGGGGTTACAATAAGGAGCAGGCATGGTCGGAGGAAATGACAGCG
TTCTTAGGGAGGGGATACATGTCGCGCCCACAGGTGACGAAGCATGTGTG
GGATTATATCAAGGAGAAAGATTTGCAGAACCCGGCGGATCGACGTGTGA
TTTTGTGTGACCCGGTTTTGAAGAGTTTGTTTGGAGGGGTGGAGAAGATA
AATATGTTTAAGATGCCCAAGGCAATCAATAAGCATGTAAGGCATGACGA
TAGGGAGAAAGAAGAAGATGAGGACGACGAGGATGATGGAGAGAATGAGT
TCGACTCGGATGACGAGGGCGACTCGCGTAAGAGGAAGGCGAGCTCGGCG
GCTAAGGCCAAAACGGAGAAGAATAAGAAAAAGGCTGCAGCAGCGGCGAC
ATCAGTCAGGACGAAAACGAATGTCAAGAAAGAAGACAGGAATGGGGCGC
CAGCTAAGCAGGGAGGAGGGAGAGGATTTCCCCAAGAGAAAATTTCGAAG
GAGCTTCAAGCGTTGATTGGGAAGGAGACGGCGAGTAGAAATGAGGTGGT
GAAGAAGCTCTGGGAGCATATCAAGGCGAATGACATGCAGGACCCTTCGG
TAGGTTTTTGGTTTGTGTTATACTATAATAGTTTATGTTATTATTATATT
ATGATTGTGGTAAATTATACAAGGTACGTGGATTTGTGGCATAGATTTGG
GGGGGGCTGGAGGTTGTTTCTTTTTGACGCGTGTCATGTATGTGCCATGT
GA
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Synonyms
Publications