NO10G02660.3, NO10G02660.3 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO10G02660.3
Unique Name	NO10G02660.3
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2855
Alignment location	chr10:726701..729930 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr10	genome	chr10:726701..729930 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO10G02660.3 vs.
Match: EWM25482.1 (swib mdm2 domain containing protein [Nannochloropsis gaditana])

HSP 1 Score: 231.5 bits (589), Expect = 3.000e-57
Identity = 135/258 (52.33%), Postives = 168/258 (65.12%), Query Frame = 0

Query:    2 KKAKREVEEGKEEEDMPVAKKKAGGYNKEQAWSEEMTAFLGRGYMSRPQVTKHVWDYIKEKDLQNPADRRVILCDPVLKSLFGGVEKINMFKMPKAINKHVRHDDREKEEDEDDEDDGENEFDSDDEGDSRKRKASSAAKAKTEKNKKKAAAAATSVRTKTNVKKEDRNGAPAKQGGGRGFPQEKISKELQALIGKETASRNEVVKKLWEHIKANDMQDPSNRMNILCDETFKRILGVDSCHGFKMNKLLAPHFLGRA 260
            +K K+++   K+E+     KKK GG+NKE AWSEEM AFLG GYMSRPQVTK +W+YIK + LQ P DRRVILCD  L+ LF  V  +NMFK+P  INKH+R DDRE+  DE  E           EG    +K  ++ K +  K KK   A                 G PAK+GG   FP EKIS +LQ L+GK TASRNEVVK++W H+K++++QDP+NRM I CD T K ILGVD+CHGF ++KLL PHFLGRA
Sbjct:  111 RKVKKKIAGRKKEKSRGEEKKKGGGFNKEYAWSEEMAAFLGEGYMSRPQVTKRMWEYIKTQGLQKPEDRRVILCDERLQRLFS-VPSLNMFKLPVMINKHMRQDDREEGADEGREKQ---------EGGEVGKKERASTKPRNPKRKKTGEA-----------------GTPAKRGG---FPPEKISVQLQGLMGKATASRNEVVKEIWTHVKSHNLQDPANRMMISCDATLKGILGVDACHGFGISKLLTPHFLGRA 338

The following BLAST results are available for this feature:

BLAST of NO10G02660.3 vs.

BLAST of NO10G02660.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM25482.1	3.000e-57	52.33	swib mdm2 domain containing protein [Nannochlorops...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO10G02660	NO10G02660	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO10G02660.3	NO10G02660.3-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO10G02660.3.cds1	NO10G02660.3.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G02660.3.cds2	NO10G02660.3.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr10:726701..729930+
coding sequence from alignment at chr10:726701..729930+

mRNA sequence

>NO10G02660.3 ID=NO10G02660.3|Name=NO10G02660.3|organism=Nannochloropsis oceanica|type=mRNA|length=2855bp
ACCCTTCTCCCGCACCTCTCCTCCTTCACCCAAACGCTGCAACCGTAGAC
ATGAAGACCCCCCCACAAAATATGCACACAAGGCCTCATCGACCGGTGAG
ATTTGAGCAGGACCAGTAAGCTGCCCTGGACAGTGACAATGCGCCTCGAC
TTCCGCCGTCGGAATGTTCCATTTACACAAATACGACGATGGGCTTCCAC
CTTGTTGATGGTAGGTCACCAAAAGTTTGTCCGCCTGACTGGACCAAGAC
AATCCTGCAATTACGTAATCTACCTCTTCGTCTCCTCGATCCTTGTTTTT
GTTGCTCGCATTGCTGCGCCCCCCTCCTCCTCGATTTCGATTTCGATTGT
TGCTCAGCTGGCGGGTGATCGCCGCAGCGCATGTCCGCACAGGCATGTGC
GCCGGCACATCCAGCTGCAGCGCAGTGTGAGGCAACGTGCTCAAGTCCCA
AATGAGTACTCCGCCTCCTTGCAAGCTGACAGCGGCATACCGGCCTTGGG
GGCTAAAGACGATCTCTGTGTCGACATCCTCCCCCTCCGCGTCCTCATTC
CATACCTTGACCCAAGGATTGTTGTCCGCTAGCAATCGCTGCACCGTGCC
TGTTTCCTCGATGCATCCCGCAGGCTTCTTCTTGTTCTTGTTGGGCGGTT
GAGATGATTGGGCCCACGCCATTGTGCGTACGCTGCTGCTGCCTGCCACG
CGGTGGGCCGATGAGGAAAGAAAGCAAGGGGTTGGAGAGGTTGGAGCCGC
AAGCGTCTTGCAACGGCCTTTGAAAAAGGCTCCAAAATTTCGATAGTCGG
AAGATGAGATGATGCTCCTCCTGTTGGTGAAGGGGAGGACATGATTTCAT
TCAGTAAAAAGCATGGTTGCATACACGTCCGCTCGTGGAAGGAGTGATGC
GCCCCTGGCTGCCTCGCTCGGCAGTTGTGGGGGCTTGAATGAATCGAGCT
CGCAGGGTTGTGCTCCACACCGCACGCACGCTCTAAACCCAGCTTTCTCG
CCTCCTATTCACACCACCGCCACCACTATCACGGCAAGCGCAGGACCGAG
CGTCTTCTATCCAGGCGTGTCCTAAGTCCAAAGCCCCTCCGCCTCGCCCA
TTCAGCCCTATGGCAACTGCCCAGGACCTGGAAGCGGCGATCCGCGTCAT
ATTGGCTACGGCCAAGCTGGAGGATGTGACGCAGCGCACGCTCCGAGAGC
AGGTACGTAGAGTGGGAGTATAGATATCGATGGGAAGGGGGGGGGCATCG
TCCTGTTTGCCTTCATTATTTGAACCTCGTAATTTTGTAGACCAATCTCT
GAATCCTGGAGCCACCACACACCACATCACACCATAACGCGCCCCTAACG
AACCCACATAGCTCGAAAGCCAGTTCGGATGCGGGCTGACCGAACAGAAA
AATATCATCAAAGAGATCACCATCCGCGTCTTGGTCGAGCGAGAGGAAGA
AATCGCGGCACAAGAGACTCAAGAAAAGGCGGCTACCAAGGCGGCAATCA
AGAGGGAAGTCGATCTGGTCCCCCAACACTCGAGCGACGACGAGAGCCAC
GATGATAACAGCAGCGAGAGCGACAAGGAAATAGGAGAGATAAAACCCAA
GATGAAAAAGGCGAAGCGTGAGGTGGAGGAGGGCAAGGAGGAGGAAGATA
TGCCCGTAGCCAAGAAGAAGGCCGGGGGTTACAATAAGGAGCAGGCATGG
TCGGAGGAAATGACAGCGTTCTTAGGGAGGGGATACATGTCGCGCCCACA
GGTGACGAAGCATGTGTGGGATTATATCAAGGAGAAAGATTTGCAGAACC
CGGCGGATCGACGTGTGATTTTGTGTGACCCGGTTTTGAAGAGTTTGTTT
GGAGGGGTGGAGAAGATAAATATGTTTAAGATGCCCAAGGCAATCAATAA
GCATGTAAGGCATGACGATAGGGAGAAAGAAGAAGATGAGGACGACGAGG
ATGATGGAGAGAATGAGTTCGACTCGGATGACGAGGGCGACTCGCGTAAG
AGGAAGGCGAGCTCGGCGGCTAAGGCCAAAACGGAGAAGAATAAGAAAAA
GGCTGCAGCAGCGGCGACATCAGTCAGGACGAAAACGAATGTCAAGAAAG
AAGACAGGAATGGGGCGCCAGCTAAGCAGGGAGGAGGGAGAGGATTTCCC
CAAGAGAAAATTTCGAAGGAGCTTCAAGCGTTGATTGGGAAGGAGACGGC
GAGTAGAAATGAGGTGGTGAAGAAGCTCTGGGAGCATATCAAGGCGAATG
ACATGCAGGACCCTTCGAACCGTATGAATATTTTGTGTGACGAGACTTTT
AAGAGGATCTTGGGGGTGGATAGCTGTCATGGATTCAAGATGAACAAATT
GCTGGCTCCTCATTTTCTGGGGCGGGCGTAGAAACGGAGAGAAGGAGGGA
TGGAGGGAGGGAGGTTGGGAAGCTCCTTGAGGGTGGGAAGCATGGTATGG
GGACGGGAAGGGAAACGGGGAAGAGGAAGAGACAGATGTAGCGGATCTCT
TGGTGTGCAGGCTGGATAAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGATGTGTGCGACTGCAGTGAGTAAATGGTAAATGAGAAAGGTAAATTTT
GTATATTAGAAACTTTCTTCCGACGAGGAGAATAAAAGAAGGAGAAGGAG
ATTAAGGTCATTGAATATCTAAAAAGAAAAGAAGAACAATGACAAAAAGA
ATAAAAGCGTGCACAAGCACAAACACAAGGGCAGGAAGAGGGCGGCTCAC
ACTCTAATTCCGTTCCTACCCATTTTTTAGAAAAGTAAGATTTAAATACT
GAAATTAAGAATCTGTAGGCCCTCCACTTATGAGAAGAATAAGAACGAAG
GCATG

protein sequence of NO10G02660.3

>NO10G02660.3-protein ID=NO10G02660.3-protein|Name=NO10G02660.3|organism=Nannochloropsis oceanica|type=polypeptide|length=260bp
MKKAKREVEEGKEEEDMPVAKKKAGGYNKEQAWSEEMTAFLGRGYMSRPQ
VTKHVWDYIKEKDLQNPADRRVILCDPVLKSLFGGVEKINMFKMPKAINK
HVRHDDREKEEDEDDEDDGENEFDSDDEGDSRKRKASSAAKAKTEKNKKK
AAAAATSVRTKTNVKKEDRNGAPAKQGGGRGFPQEKISKELQALIGKETA
SRNEVVKKLWEHIKANDMQDPSNRMNILCDETFKRILGVDSCHGFKMNKL
LAPHFLGRA*

mRNA from alignment at chr10:726701..729930+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO10G02660.3 ID=NO10G02660.3|Name=NO10G02660.3|organism=Nannochloropsis oceanica|type=mRNA|length=3230bp|location=Sequence derived from alignment at chr10:726701..729930+ (Nannochloropsis oceanica)
ACCCTTCTCCCGCACCTCTCCTCCTTCACCCAAACGCTGCAACCGTAGAC
ATGAAGACCCCCCCACAAAATATGCACACAAGGCCTCATCGACCGGTGAG
ATTTGAGCAGGACCAGTAAGCTGCCCTGGACAGTGACAATGCGCCTCGAC
TTCCGCCGTCGGAATGTTCCATTTACACAAATACGACGATGGGCTTCCAC
CTTGTTGATGGTAGGTCACCAAAAGTTTGTCCGCCTGACTGGACCAAGAC
AATCCTGCAATTACGTAATCTACCTCTTCGTCTCCTCGATCCTTGTTTTT
GTTGCTCGCATTGCTGCGCCCCCCTCCTCCTCGATTTCGATTTCGATTGT
TGCTCAGCTGGCGGGTGATCGCCGCAGCGCATGTCCGCACAGGCATGTGC
GCCGGCACATCCAGCTGCAGCGCAGTGTGAGGCAACGTGCTCAAGTCCCA
AATGAGTACTCCGCCTCCTTGCAAGCTGACAGCGGCATACCGGCCTTGGG
GGCTAAAGACGATCTCTGTGTCGACATCCTCCCCCTCCGCGTCCTCATTC
CATACCTTGACCCAAGGATTGTTGTCCGCTAGCAATCGCTGCACCGTGCC
TGTTTCCTCGATGCATCCCGCAGGCTTCTTCTTGTTCTTGTTGGGCGGTT
GAGATGATTGGGCCCACGCCATTGTGCGTACGCTGCTGCTGCCTGCCACG
CGGTGGGCCGATGAGGAAAGAAAGCAAGGGGTTGGAGAGGTTGGAGCCGC
AAGCGTCTTGCAACGGCCTTTGAAAAAGGCTCCAAAATTTCGATAGTCGG
AAGATGAGATGATGCTCCTCCTGTTGGTGAAGGGGAGGACATGATTTCAT
TCAGTAAAAAGCATGGTTGCATACACGTCCGCTCGTGGAAGGAGTGATGC
GCCCCTGGCTGCCTCGCTCGGCAGTTGTGGGGGCTTGAATGAATCGAGCT
CGCAGGGTTGTGCTCCACACCGCACGCACGCTCTAAACCCAGCTTTCTCG
CCTCCTATTCACACCACCGCCACCACTATCACGGCAAGCGCAGGACCGAG
CGTCTTCTATCCAGGCGTGTCCTAAGTCCAAAGCCCCTCCGCCTCGCCCA
TTCAGCCCTATGGCAACTGCCCAGGACCTGGAAGCGGCGATCCGCGTCAT
ATTGGCTACGGCCAAGCTGGAGGATGTGACGCAGCGCACGCTCCGAGAGC
AGGTACGTAGAGTGGGAGTATAGATATCGATGGGAAGGGGGGGGGCATCG
TCCTGTTTGCCTTCATTATTTGAACCTCGTAATTTTGTAGACCAATCTCT
GAATCCTGGAGCCACCACACACCACATCACACCATAACGCGCCCCTAACG
AACCCACATAGCTCGAAAGCCAGTTCGGATGCGGGCTGACCGAACAGAAA
AATATCATCAAAGAGATCACCATCCGCGTCTTGGTCGAGCGAGAGGAAGA
AATCGCGGCACAAGAGACTCAAGAAAAGGCGGCTACCAAGGCGGCAATCA
AGAGGGAAGTCGATCTGGTCCCCCAACACTCGAGCGACGACGAGAGCCAC
GATGATAACAGCAGCGAGAGCGACAAGGAAATAGGAGAGATAAAACCCAA
GATGAAAAAGGCGAAGCGTGAGGTGGAGGAGGGCAAGGAGGAGGAAGATA
TGCCCGTAGCCAAGAAGAAGGCCGGGGGTTACAATAAGGAGCAGGCATGG
TCGGAGGAAATGACAGCGTTCTTAGGGAGGGGATACATGTCGCGCCCACA
GGTGACGAAGCATGTGTGGGATTATATCAAGGAGAAAGATTTGCAGAACC
CGGCGGATCGACGTGTGATTTTGTGTGACCCGGTTTTGAAGAGTTTGTTT
GGAGGGGTGGAGAAGATAAATATGTTTAAGATGCCCAAGGCAATCAATAA
GCATGTAAGGCATGACGATAGGGAGAAAGAAGAAGATGAGGACGACGAGG
ATGATGGAGAGAATGAGTTCGACTCGGATGACGAGGGCGACTCGCGTAAG
AGGAAGGCGAGCTCGGCGGCTAAGGCCAAAACGGAGAAGAATAAGAAAAA
GGCTGCAGCAGCGGCGACATCAGTCAGGACGAAAACGAATGTCAAGAAAG
AAGACAGGAATGGGGCGCCAGCTAAGCAGGGAGGAGGGAGAGGATTTCCC
CAAGAGAAAATTTCGAAGGAGCTTCAAGCGTTGATTGGGAAGGAGACGGC
GAGTAGAAATGAGGTGGTGAAGAAGCTCTGGGAGCATATCAAGGCGAATG
ACATGCAGGACCCTTCGGTAGGTTTTTGGTTTGTGTTATACTATAATAGT
TTATGTTATTATTATATTATGATTGTGGTAAATTATACAAGGTACGTGGA
TTTGTGGCATAGATTTGGGGGGGGCTGGAGGTTGTTTCTTTTTGACGCGT
GTCATGTATGTGCCATGTGACGTGCGAAAGGGTTATGGGAGTATAGCGGG
CGAAGCCAATCACACGCGAGAAGCATCCTTCGGTGTTTCTTAGGTTTGAA
TAGATGTGGGAATAAAATGGTTTTACGTGCTTATATTATGTATTTGGAGC
TTTATATGTATGTTGCCTTTGTCTTTCCCTTTTTTAAACTTGTCTCAAAT
GCCTCCTAACATCCTCCTCCCTCTTCTTCCACATCTTCACAGAACCGTAT
GAATATTTTGTGTGACGAGACTTTTAAGAGGATCTTGGGGGTGGATAGCT
GTCATGGATTCAAGATGAACAAATTGCTGGCTCCTCATTTTCTGGGGCGG
GCGTAGAAACGGAGAGAAGGAGGGATGGAGGGAGGGAGGTTGGGAAGCTC
CTTGAGGGTGGGAAGCATGGTATGGGGACGGGAAGGGAAACGGGGAAGAG
GAAGAGACAGATGTAGCGGATCTCTTGGTGTGCAGGCTGGATAAGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGAGGGATGTGTGCGACTGCAGTGAGTAA
ATGGTAAATGAGAAAGGTAAATTTTGTATATTAGAAACTTTCTTCCGACG
AGGAGAATAAAAGAAGGAGAAGGAGATTAAGGTCATTGAATATCTAAAAA
GAAAAGAAGAACAATGACAAAAAGAATAAAAGCGTGCACAAGCACAAACA
CAAGGGCAGGAAGAGGGCGGCTCACACTCTAATTCCGTTCCTACCCATTT
TTTAGAAAAGTAAGATTTAAATACTGAAATTAAGAATCTGTAGGCCCTCC
ACTTATGAGAAGAATAAGAACGAAGGCATG

Coding sequence (CDS) from alignment at chr10:726701..729930+

>NO10G02660.3 ID=NO10G02660.3|Name=NO10G02660.3|organism=Nannochloropsis oceanica|type=CDS|length=780bp|location=Sequence derived from alignment at chr10:726701..729930+ (Nannochloropsis oceanica)
ATGAAAAAGGCGAAGCGTGAGGTGGAGGAGGGCAAGGAGGAGGAAGATAT
GCCCGTAGCCAAGAAGAAGGCCGGGGGTTACAATAAGGAGCAGGCATGGT
CGGAGGAAATGACAGCGTTCTTAGGGAGGGGATACATGTCGCGCCCACAG
GTGACGAAGCATGTGTGGGATTATATCAAGGAGAAAGATTTGCAGAACCC
GGCGGATCGACGTGTGATTTTGTGTGACCCGGTTTTGAAGAGTTTGTTTG
GAGGGGTGGAGAAGATAAATATGTTTAAGATGCCCAAGGCAATCAATAAG
CATGTAAGGCATGACGATAGGGAGAAAGAAGAAGATGAGGACGACGAGGA
TGATGGAGAGAATGAGTTCGACTCGGATGACGAGGGCGACTCGCGTAAGA
GGAAGGCGAGCTCGGCGGCTAAGGCCAAAACGGAGAAGAATAAGAAAAAG
GCTGCAGCAGCGGCGACATCAGTCAGGACGAAAACGAATGTCAAGAAAGA
AGACAGGAATGGGGCGCCAGCTAAGCAGGGAGGAGGGAGAGGATTTCCCC
AAGAGAAAATTTCGAAGGAGCTTCAAGCGTTGATTGGGAAGGAGACGGCG
AGTAGAAATGAGGTGGTGAAGAAGCTCTGGGAGCATATCAAGGCGAATGA
CATGCAGGACCCTTCGAACCGTATGAATATTTTGTGTGACGAGACTTTTA
AGAGGATCTTGGGGGTGGATAGCTGTCATGGATTCAAGATGAACAAATTG
CTGGCTCCTCATTTTCTGGGGCGGGCGTAG

Synonyms

Publications