NO10G02650, NO10G02650 (gene) Nannochloropsis oceanica

Overview
NameNO10G02650
Unique NameNO10G02650
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2264
Alignment locationchr10:725109..727372 -

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Properties
Property NameValue
DescriptionSix-bladed beta-propeller, TolB
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:725109..727372 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO10G02650 vs. NCBI_GenBank
Match: EWM25481.1 (Six-bladed beta-propeller, TolB [Nannochloropsis gaditana])

HSP 1 Score: 374.4 bits (960), Expect = 7.400e-100
Identity = 203/352 (57.67%), Postives = 252/352 (71.59%), Query Frame = 0 
Query:   11 NKNKKKPAGCIEETGTVQRLLADNNPWVKVWNEDAEGEDVDTEIVFSPQGRYAAVSLQGGGVLIWDLSTLPHTALQLDVPAHMPVRTCAAAITRQLSNXXXXXXXXXXXXXXXXXXXXXXDEEVDYVIAGLSWSSQADKLLVTYHQQGG--SPSSYLCKWNIPTAEVEAHCHCPGQLTGPAQISPVDEALCAYFVGGSSCLRLQRLGEGGEVREKGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDPRLGLCLFSTDGQALYCVCVRDRRVLKLDVSTLQEEGRSPDMLLPGQRVLVQKLRLSPDGRCLFVFTNRAAHLIETEGMRAAEPLGDFGAIKVEWGCWSVGPARN 361
            N  K+KPAGCIEET  +QRLL  N+ W+++WNED EGED+D+EI FSPQGRYAAVSLQGG VLIWDLSTLPH  L+LD+P HMP++T A    R  S+XXXXXXXXXXXXXXXXX     + +V+YV+ GLSWSS+A KLLVTYHQ+GG  + SSYLC W++P+A VE H + P  L GPAQ+SPVD++LCAYF+ GS CLRLQ L  G +  ++G                             +  RLGLC F  DG++L+CV  R+RRV K+D  +L    RSP+ +L G +++V K  +S DG CLFVF+NRAAHL+ET G+RAAE +GDFGAIKVEWGCWSVGP+RN
Sbjct:   12 NAKKRKPAGCIEETPIIQRLLGSNSAWLRIWNEDIEGEDIDSEIAFSPQGRYAAVSLQGGSVLIWDLSTLPHVVLRLDLPPHMPLQTQATVPRR--SSXXXXXXXXXXXXXXXXXGDRAVENDVEYVVVGLSWSSRAHKLLVTYHQRGGGSASSSYLCLWHLPSAAVEGHAYFPDCLIGPAQLSPVDDSLCAYFLSGSVCLRLQHL-RGSQPAQEG----------REVLLSPSREGAGGTLGSGDGHRLGLCAFGRDGRSLFCVSARERRVFKVDTDSLAVLARSPE-ILAGAKLVVLKTLMSRDGSCLFVFSNRAAHLLETHGLRAAEAVGDFGAIKVEWGCWSVGPSRN 349
The following BLAST results are available for this feature:
BLAST of NO10G02650 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25481.17.400e-10057.67Six-bladed beta-propeller, TolB [Nannochloropsis g... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001131NSK001131Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G02650.1NO10G02650.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585927gene_3946Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G02650.1NO10G02650.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G02650 ID=NO10G02650|Name=NO10G02650|organism=Nannochloropsis oceanica|type=gene|length=2264bp
ATGGCGTGGGCCCAATCATCTCAACCGCCCAACAAGAACAAGAAGAAGCC
TGCGGGATGCATCGAGGAAACAGGCACGGTGCAGCGATTGCTAGCGGACA
ACAATCCTTGGGTCAAGGTATGGAATGAGGACGCGGAGGGGGAGGATGTC
GACACAGAGATCGTCTTTAGCCCCCAAGGCCGGTATGCCGCTGTCAGCTT
GCAAGGAGGCGGAGTACTCATTTGGGACTTGAGCACGTTGCCTCACACTG
CGCTGCAGCTGGATGTGCCGGCGCACATGCCTGTGCGGACATGCGCTGCG
GCGATCACCCGCCAGCTGAGCAACAATCGAAATCGAAATCGAGGAGGAGG
GGGGCGCAGCAATGCGAGCAACAAAAACAAGGATCGAGGAGACGAAGAGG
TAGATTACGTAATTGCAGGATTGTCTTGGTCCAGTCAGGCGGACAAACTT
TTGGTGACCTACCATCAACAAGGTGGAAGCCCATCGTCGTATTTGTGTAA
ATGGAACATTCCGACGGCGGAAGTCGAGGCGCATTGTCACTGTCCAGGGC
AGCTTACTGGTCCTGCTCAAATCTCACCGGTCGATGAGGCCTTGTGTGCA
TATTTTGTGGGGGGGTCTTCATGTCTACGGTTGCAGCGTTTGGGTGAAGG
AGGAGAGGTGCGGGAGAAGGGTTTGAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAACGCCGAAGGCAGCAGCGCTAACACCACCGCTACC
GCCGCTACTGAGGACCCACGTCTGGGTTTGTGCCTTTTCAGCACCGACGG
TCAGGCTCTGTACTGTGTGTGCGTGCGTGATCGAAGGGTGCTCAAGCTCG
ACGTGTCGACCCTCCAAGAAGAGGGTCGAAGCCCTGACATGCTTCTGCCG
GGACAACGAGTCTTAGTTCAAAAACTTCGTTTGTCTCCCGATGGCCGTTG
CCTATTTGTCTTTACCAACCGGGCGGCTCATTTGATCGAAACGGAAGGGA
TGCGGGCAGCAGAGCCTTTGGGGGATTTCGGAGCGATAAAGGTGGAATGG
GGTTGCTGGAGTGTGGGGCCGGCTAGGAATCAGCAGCAGCAGCAGGACCA
GCGGCAATTGGTTGTAGTGGGTGTACCATGTCCGTTTAATGGGGACAGCG
TACAAGAGGGCTTGTTCGTCTGGCGGGTTCACGGCCTGGATGGTACGACT
GCTGCTGATGCTGCTGCTGCTGATGCTGCTGCTTCCACTGCGGGCCAGAC
AAAGGACGGGGAAAAGAGCGAGGACGAGGACGACGAGGAAGGAGATGAGG
AAGATGAGTCTAACACCGGTGTACCCCTTGTGGATCCCTCTCCTGACATC
CTACCGGGTTTCATTCAAGGTCTCCAAGCTCTGGAGATTTGTCCGAGGCG
CGCTCTCTTGCTGGGGGCGGATTGCCATGGAGGATTGTTCGTGCAGAGTG
AGAGGTTCACGACCGGCTTCCCAGGGCCCATGTATGCGCCAGGGTACACG
ATCTTGGGGAATAACCGGACATACCTCGAAAGGGAGGAAGAGCTGGACAA
GGTGGTAGTACCCGAGGGAGGGGATGGAAAAGGAACGGAGGAAGAAGCGG
ATAGTGAGGCTGCGGTCCCTGATGAGGAAGGGGAGGTGGATGTGGTGGTG
GGGTTGGAGgtaggacggagggggggggagatgcgatgatgcttcagatt
caacccagacccatatacgtgaatcggtgtctgagcgagcacctggcatt
tccactagtcccattcagcggtgggatccacaggaagaggaaattgcacg
agaagcagggatggggggagagagggaggggagaagaagaggaaaaagag
gagggagaggcccttccgacgggtttcggggagtatttgcccatgcccca
gGCGCTTGTCACGTTGGCACGAAAGAAGCGCAAGGCCGAGCAAACTGCGA
GGGAGAAAGAGGGAGGAAAGGAGAGAGGGAGGGGAGGACTAAGCGTGTCG
AGTCAACGATTTAGGGCGGTTGAGACATGGGCAGCCAAGGGGAGGACTAT
GATAAAGCACGCCCTGGCACGAGAATTGGCAGAGAGTGAGGGGAAGAGTG
AGACAGCAGCAGCAGCAGCAGCAGCAGCAGAAAAGGGGGGAGAAAAAGCG
AAAGCAAAGGAGGCGGCGGCGGCCAACGCGGCCAAAATAGCGGCGGCACC
GACACGGCAGGAGCTGCAGCAGGAGCAGGAGCAGCAGCGTGAGCAGCAGC
ATGGGCAACAGTAG
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protein sequence of NO10G02650.1

>NO10G02650.1-protein ID=NO10G02650.1-protein|Name=NO10G02650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=674bp
MAWAQSSQPPNKNKKKPAGCIEETGTVQRLLADNNPWVKVWNEDAEGEDV
DTEIVFSPQGRYAAVSLQGGGVLIWDLSTLPHTALQLDVPAHMPVRTCAA
AITRQLSNNRNRNRGGGGRSNASNKNKDRGDEEVDYVIAGLSWSSQADKL
LVTYHQQGGSPSSYLCKWNIPTAEVEAHCHCPGQLTGPAQISPVDEALCA
YFVGGSSCLRLQRLGEGGEVREKGLSSSSSSSSSSSSSNAEGSSANTTAT
AATEDPRLGLCLFSTDGQALYCVCVRDRRVLKLDVSTLQEEGRSPDMLLP
GQRVLVQKLRLSPDGRCLFVFTNRAAHLIETEGMRAAEPLGDFGAIKVEW
GCWSVGPARNQQQQQDQRQLVVVGVPCPFNGDSVQEGLFVWRVHGLDGTT
AADAAAADAAASTAGQTKDGEKSEDEDDEEGDEEDESNTGVPLVDPSPDI
LPGFIQGLQALEICPRRALLLGADCHGGLFVQSERFTTGFPGPMYAPGYT
ILGNNRTYLEREEELDKVVVPEGGDGKGTEEEADSEAAVPDEEGEVDVVV
GLEALVTLARKKRKAEQTAREKEGGKERGRGGLSVSSQRFRAVETWAAKG
RTMIKHALARELAESEGKSETAAAAAAAAEKGGEKAKAKEAAAANAAKIA
AAPTRQELQQEQEQQREQQHGQQ*
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Synonyms
Publications