NO10G02650.1, NO10G02650.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G02650.1
Unique NameNO10G02650.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2022
Alignment locationchr10:725109..727372 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:725109..727372 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G02650.1 vs.
Match: EWM25481.1 (Six-bladed beta-propeller, TolB [Nannochloropsis gaditana])

HSP 1 Score: 382.9 bits (982), Expect = 2.100e-102
Identity = 197/356 (55.34%), Postives = 253/356 (71.07%), Query Frame = 0 
Query:   11 NKNKKKPAGCIEETGTVQRLLADNNPWVKVWNEDAEGEDVDTEIVFSPQGRYAAVSLQGGGVLIWDLSTLPHTALQLDVPAHMPVRTCAAAITRQLSNNRNRNRGGGGRSNASNKNKDRG-DEEVDYVIAGLSWSSQADKLLVTYHQQGG--SPSSYLCKWNIPTAEVEAHCHCPGQLTGPAQISPVDEALCAYFVGGSSCLRLQRLGEGGEVREKG---LSSSSSSSSSSSSSNAEGSSANTTATAATEDPRLGLCLFSTDGQALYCVCVRDRRVLKLDVSTLQEEGRSPDMLLPGQRVLVQKLRLSPDGRCLFVFTNRAAHLIETEGMRAAEPLGDFGAIKVEWGCWSVGPARN 361
            N  K+KPAGCIEET  +QRLL  N+ W+++WNED EGED+D+EI FSPQGRYAAVSLQGG VLIWDLSTLPH  L+LD+P HMP++T A    R   ++++R RGG GR      + DR  + +V+YV+ GLSWSS+A KLLVTYHQ+GG  + SSYLC W++P+A VE H + P  L GPAQ+SPVD++LCAYF+ GS CLRLQ L  G +  ++G   L S S   +  +  + +G              RLGLC F  DG++L+CV  R+RRV K+D  +L    RSP+ +L G +++V K  +S DG CLFVF+NRAAHL+ET G+RAAE +GDFGAIKVEWGCWSVGP+RN
Sbjct:   12 NAKKRKPAGCIEETPIIQRLLGSNSAWLRIWNEDIEGEDIDSEIAFSPQGRYAAVSLQGGSVLIWDLSTLPHVVLRLDLPPHMPLQTQATVPRR---SSKSRGRGGRGRGRGGGSSGDRAVENDVEYVVVGLSWSSRAHKLLVTYHQRGGGSASSSYLCLWHLPSAAVEGHAYFPDCLIGPAQLSPVDDSLCAYFLSGSVCLRLQHL-RGSQPAQEGREVLLSPSREGAGGTLGSGDGH-------------RLGLCAFGRDGRSLFCVSARERRVFKVDTDSLAVLARSPE-ILAGAKLVVLKTLMSRDGSCLFVFSNRAAHLLETHGLRAAEAVGDFGAIKVEWGCWSVGPSRN 349
The following BLAST results are available for this feature:
BLAST of NO10G02650.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25481.12.100e-10255.34Six-bladed beta-propeller, TolB [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G02650NO10G02650Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G02650.1NO10G02650.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G02650.1.cds1NO10G02650.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G02650.1.cds2NO10G02650.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G02650.1 ID=NO10G02650.1|Name=NO10G02650.1|organism=Nannochloropsis oceanica|type=mRNA|length=2022bp
ATGGCGTGGGCCCAATCATCTCAACCGCCCAACAAGAACAAGAAGAAGCC
TGCGGGATGCATCGAGGAAACAGGCACGGTGCAGCGATTGCTAGCGGACA
ACAATCCTTGGGTCAAGGTATGGAATGAGGACGCGGAGGGGGAGGATGTC
GACACAGAGATCGTCTTTAGCCCCCAAGGCCGGTATGCCGCTGTCAGCTT
GCAAGGAGGCGGAGTACTCATTTGGGACTTGAGCACGTTGCCTCACACTG
CGCTGCAGCTGGATGTGCCGGCGCACATGCCTGTGCGGACATGCGCTGCG
GCGATCACCCGCCAGCTGAGCAACAATCGAAATCGAAATCGAGGAGGAGG
GGGGCGCAGCAATGCGAGCAACAAAAACAAGGATCGAGGAGACGAAGAGG
TAGATTACGTAATTGCAGGATTGTCTTGGTCCAGTCAGGCGGACAAACTT
TTGGTGACCTACCATCAACAAGGTGGAAGCCCATCGTCGTATTTGTGTAA
ATGGAACATTCCGACGGCGGAAGTCGAGGCGCATTGTCACTGTCCAGGGC
AGCTTACTGGTCCTGCTCAAATCTCACCGGTCGATGAGGCCTTGTGTGCA
TATTTTGTGGGGGGGTCTTCATGTCTACGGTTGCAGCGTTTGGGTGAAGG
AGGAGAGGTGCGGGAGAAGGGTTTGAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAACGCCGAAGGCAGCAGCGCTAACACCACCGCTACC
GCCGCTACTGAGGACCCACGTCTGGGTTTGTGCCTTTTCAGCACCGACGG
TCAGGCTCTGTACTGTGTGTGCGTGCGTGATCGAAGGGTGCTCAAGCTCG
ACGTGTCGACCCTCCAAGAAGAGGGTCGAAGCCCTGACATGCTTCTGCCG
GGACAACGAGTCTTAGTTCAAAAACTTCGTTTGTCTCCCGATGGCCGTTG
CCTATTTGTCTTTACCAACCGGGCGGCTCATTTGATCGAAACGGAAGGGA
TGCGGGCAGCAGAGCCTTTGGGGGATTTCGGAGCGATAAAGGTGGAATGG
GGTTGCTGGAGTGTGGGGCCGGCTAGGAATCAGCAGCAGCAGCAGGACCA
GCGGCAATTGGTTGTAGTGGGTGTACCATGTCCGTTTAATGGGGACAGCG
TACAAGAGGGCTTGTTCGTCTGGCGGGTTCACGGCCTGGATGGTACGACT
GCTGCTGATGCTGCTGCTGCTGATGCTGCTGCTTCCACTGCGGGCCAGAC
AAAGGACGGGGAAAAGAGCGAGGACGAGGACGACGAGGAAGGAGATGAGG
AAGATGAGTCTAACACCGGTGTACCCCTTGTGGATCCCTCTCCTGACATC
CTACCGGGTTTCATTCAAGGTCTCCAAGCTCTGGAGATTTGTCCGAGGCG
CGCTCTCTTGCTGGGGGCGGATTGCCATGGAGGATTGTTCGTGCAGAGTG
AGAGGTTCACGACCGGCTTCCCAGGGCCCATGTATGCGCCAGGGTACACG
ATCTTGGGGAATAACCGGACATACCTCGAAAGGGAGGAAGAGCTGGACAA
GGTGGTAGTACCCGAGGGAGGGGATGGAAAAGGAACGGAGGAAGAAGCGG
ATAGTGAGGCTGCGGTCCCTGATGAGGAAGGGGAGGTGGATGTGGTGGTG
GGGTTGGAGGCGCTTGTCACGTTGGCACGAAAGAAGCGCAAGGCCGAGCA
AACTGCGAGGGAGAAAGAGGGAGGAAAGGAGAGAGGGAGGGGAGGACTAA
GCGTGTCGAGTCAACGATTTAGGGCGGTTGAGACATGGGCAGCCAAGGGG
AGGACTATGATAAAGCACGCCCTGGCACGAGAATTGGCAGAGAGTGAGGG
GAAGAGTGAGACAGCAGCAGCAGCAGCAGCAGCAGCAGAAAAGGGGGGAG
AAAAAGCGAAAGCAAAGGAGGCGGCGGCGGCCAACGCGGCCAAAATAGCG
GCGGCACCGACACGGCAGGAGCTGCAGCAGGAGCAGGAGCAGCAGCGTGA
GCAGCAGCATGGGCAACAGTAG
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protein sequence of NO10G02650.1

>NO10G02650.1-protein ID=NO10G02650.1-protein|Name=NO10G02650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=674bp
MAWAQSSQPPNKNKKKPAGCIEETGTVQRLLADNNPWVKVWNEDAEGEDV
DTEIVFSPQGRYAAVSLQGGGVLIWDLSTLPHTALQLDVPAHMPVRTCAA
AITRQLSNNRNRNRGGGGRSNASNKNKDRGDEEVDYVIAGLSWSSQADKL
LVTYHQQGGSPSSYLCKWNIPTAEVEAHCHCPGQLTGPAQISPVDEALCA
YFVGGSSCLRLQRLGEGGEVREKGLSSSSSSSSSSSSSNAEGSSANTTAT
AATEDPRLGLCLFSTDGQALYCVCVRDRRVLKLDVSTLQEEGRSPDMLLP
GQRVLVQKLRLSPDGRCLFVFTNRAAHLIETEGMRAAEPLGDFGAIKVEW
GCWSVGPARNQQQQQDQRQLVVVGVPCPFNGDSVQEGLFVWRVHGLDGTT
AADAAAADAAASTAGQTKDGEKSEDEDDEEGDEEDESNTGVPLVDPSPDI
LPGFIQGLQALEICPRRALLLGADCHGGLFVQSERFTTGFPGPMYAPGYT
ILGNNRTYLEREEELDKVVVPEGGDGKGTEEEADSEAAVPDEEGEVDVVV
GLEALVTLARKKRKAEQTAREKEGGKERGRGGLSVSSQRFRAVETWAAKG
RTMIKHALARELAESEGKSETAAAAAAAAEKGGEKAKAKEAAAANAAKIA
AAPTRQELQQEQEQQREQQHGQQ*
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mRNA from alignment at chr10:725109..727372-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G02650.1 ID=NO10G02650.1|Name=NO10G02650.1|organism=Nannochloropsis oceanica|type=mRNA|length=2264bp|location=Sequence derived from alignment at chr10:725109..727372- (Nannochloropsis oceanica)
ATGGCGTGGGCCCAATCATCTCAACCGCCCAACAAGAACAAGAAGAAGCC
TGCGGGATGCATCGAGGAAACAGGCACGGTGCAGCGATTGCTAGCGGACA
ACAATCCTTGGGTCAAGGTATGGAATGAGGACGCGGAGGGGGAGGATGTC
GACACAGAGATCGTCTTTAGCCCCCAAGGCCGGTATGCCGCTGTCAGCTT
GCAAGGAGGCGGAGTACTCATTTGGGACTTGAGCACGTTGCCTCACACTG
CGCTGCAGCTGGATGTGCCGGCGCACATGCCTGTGCGGACATGCGCTGCG
GCGATCACCCGCCAGCTGAGCAACAATCGAAATCGAAATCGAGGAGGAGG
GGGGCGCAGCAATGCGAGCAACAAAAACAAGGATCGAGGAGACGAAGAGG
TAGATTACGTAATTGCAGGATTGTCTTGGTCCAGTCAGGCGGACAAACTT
TTGGTGACCTACCATCAACAAGGTGGAAGCCCATCGTCGTATTTGTGTAA
ATGGAACATTCCGACGGCGGAAGTCGAGGCGCATTGTCACTGTCCAGGGC
AGCTTACTGGTCCTGCTCAAATCTCACCGGTCGATGAGGCCTTGTGTGCA
TATTTTGTGGGGGGGTCTTCATGTCTACGGTTGCAGCGTTTGGGTGAAGG
AGGAGAGGTGCGGGAGAAGGGTTTGAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAACGCCGAAGGCAGCAGCGCTAACACCACCGCTACC
GCCGCTACTGAGGACCCACGTCTGGGTTTGTGCCTTTTCAGCACCGACGG
TCAGGCTCTGTACTGTGTGTGCGTGCGTGATCGAAGGGTGCTCAAGCTCG
ACGTGTCGACCCTCCAAGAAGAGGGTCGAAGCCCTGACATGCTTCTGCCG
GGACAACGAGTCTTAGTTCAAAAACTTCGTTTGTCTCCCGATGGCCGTTG
CCTATTTGTCTTTACCAACCGGGCGGCTCATTTGATCGAAACGGAAGGGA
TGCGGGCAGCAGAGCCTTTGGGGGATTTCGGAGCGATAAAGGTGGAATGG
GGTTGCTGGAGTGTGGGGCCGGCTAGGAATCAGCAGCAGCAGCAGGACCA
GCGGCAATTGGTTGTAGTGGGTGTACCATGTCCGTTTAATGGGGACAGCG
TACAAGAGGGCTTGTTCGTCTGGCGGGTTCACGGCCTGGATGGTACGACT
GCTGCTGATGCTGCTGCTGCTGATGCTGCTGCTTCCACTGCGGGCCAGAC
AAAGGACGGGGAAAAGAGCGAGGACGAGGACGACGAGGAAGGAGATGAGG
AAGATGAGTCTAACACCGGTGTACCCCTTGTGGATCCCTCTCCTGACATC
CTACCGGGTTTCATTCAAGGTCTCCAAGCTCTGGAGATTTGTCCGAGGCG
CGCTCTCTTGCTGGGGGCGGATTGCCATGGAGGATTGTTCGTGCAGAGTG
AGAGGTTCACGACCGGCTTCCCAGGGCCCATGTATGCGCCAGGGTACACG
ATCTTGGGGAATAACCGGACATACCTCGAAAGGGAGGAAGAGCTGGACAA
GGTGGTAGTACCCGAGGGAGGGGATGGAAAAGGAACGGAGGAAGAAGCGG
ATAGTGAGGCTGCGGTCCCTGATGAGGAAGGGGAGGTGGATGTGGTGGTG
GGGTTGGAGGTAGGACGGAGGGGGGGGGAGATGCGATGATGCTTCAGATT
CAACCCAGACCCATATACGTGAATCGGTGTCTGAGCGAGCACCTGGCATT
TCCACTAGTCCCATTCAGCGGTGGGATCCACAGGAAGAGGAAATTGCACG
AGAAGCAGGGATGGGGGGAGAGAGGGAGGGGAGAAGAAGAGGAAAAAGAG
GAGGGAGAGGCCCTTCCGACGGGTTTCGGGGAGTATTTGCCCATGCCCCA
GGCGCTTGTCACGTTGGCACGAAAGAAGCGCAAGGCCGAGCAAACTGCGA
GGGAGAAAGAGGGAGGAAAGGAGAGAGGGAGGGGAGGACTAAGCGTGTCG
AGTCAACGATTTAGGGCGGTTGAGACATGGGCAGCCAAGGGGAGGACTAT
GATAAAGCACGCCCTGGCACGAGAATTGGCAGAGAGTGAGGGGAAGAGTG
AGACAGCAGCAGCAGCAGCAGCAGCAGCAGAAAAGGGGGGAGAAAAAGCG
AAAGCAAAGGAGGCGGCGGCGGCCAACGCGGCCAAAATAGCGGCGGCACC
GACACGGCAGGAGCTGCAGCAGGAGCAGGAGCAGCAGCGTGAGCAGCAGC
ATGGGCAACAGTAG
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Coding sequence (CDS) from alignment at chr10:725109..727372-

>NO10G02650.1 ID=NO10G02650.1|Name=NO10G02650.1|organism=Nannochloropsis oceanica|type=CDS|length=2022bp|location=Sequence derived from alignment at chr10:725109..727372- (Nannochloropsis oceanica)
ATGGCGTGGGCCCAATCATCTCAACCGCCCAACAAGAACAAGAAGAAGCC
TGCGGGATGCATCGAGGAAACAGGCACGGTGCAGCGATTGCTAGCGGACA
ACAATCCTTGGGTCAAGGTATGGAATGAGGACGCGGAGGGGGAGGATGTC
GACACAGAGATCGTCTTTAGCCCCCAAGGCCGGTATGCCGCTGTCAGCTT
GCAAGGAGGCGGAGTACTCATTTGGGACTTGAGCACGTTGCCTCACACTG
CGCTGCAGCTGGATGTGCCGGCGCACATGCCTGTGCGGACATGCGCTGCG
GCGATCACCCGCCAGCTGAGCAACAATCGAAATCGAAATCGAGGAGGAGG
GGGGCGCAGCAATGCGAGCAACAAAAACAAGGATCGAGGAGACGAAGAGG
TAGATTACGTAATTGCAGGATTGTCTTGGTCCAGTCAGGCGGACAAACTT
TTGGTGACCTACCATCAACAAGGTGGAAGCCCATCGTCGTATTTGTGTAA
ATGGAACATTCCGACGGCGGAAGTCGAGGCGCATTGTCACTGTCCAGGGC
AGCTTACTGGTCCTGCTCAAATCTCACCGGTCGATGAGGCCTTGTGTGCA
TATTTTGTGGGGGGGTCTTCATGTCTACGGTTGCAGCGTTTGGGTGAAGG
AGGAGAGGTGCGGGAGAAGGGTTTGAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAACGCCGAAGGCAGCAGCGCTAACACCACCGCTACC
GCCGCTACTGAGGACCCACGTCTGGGTTTGTGCCTTTTCAGCACCGACGG
TCAGGCTCTGTACTGTGTGTGCGTGCGTGATCGAAGGGTGCTCAAGCTCG
ACGTGTCGACCCTCCAAGAAGAGGGTCGAAGCCCTGACATGCTTCTGCCG
GGACAACGAGTCTTAGTTCAAAAACTTCGTTTGTCTCCCGATGGCCGTTG
CCTATTTGTCTTTACCAACCGGGCGGCTCATTTGATCGAAACGGAAGGGA
TGCGGGCAGCAGAGCCTTTGGGGGATTTCGGAGCGATAAAGGTGGAATGG
GGTTGCTGGAGTGTGGGGCCGGCTAGGAATCAGCAGCAGCAGCAGGACCA
GCGGCAATTGGTTGTAGTGGGTGTACCATGTCCGTTTAATGGGGACAGCG
TACAAGAGGGCTTGTTCGTCTGGCGGGTTCACGGCCTGGATGGTACGACT
GCTGCTGATGCTGCTGCTGCTGATGCTGCTGCTTCCACTGCGGGCCAGAC
AAAGGACGGGGAAAAGAGCGAGGACGAGGACGACGAGGAAGGAGATGAGG
AAGATGAGTCTAACACCGGTGTACCCCTTGTGGATCCCTCTCCTGACATC
CTACCGGGTTTCATTCAAGGTCTCCAAGCTCTGGAGATTTGTCCGAGGCG
CGCTCTCTTGCTGGGGGCGGATTGCCATGGAGGATTGTTCGTGCAGAGTG
AGAGGTTCACGACCGGCTTCCCAGGGCCCATGTATGCGCCAGGGTACACG
ATCTTGGGGAATAACCGGACATACCTCGAAAGGGAGGAAGAGCTGGACAA
GGTGGTAGTACCCGAGGGAGGGGATGGAAAAGGAACGGAGGAAGAAGCGG
ATAGTGAGGCTGCGGTCCCTGATGAGGAAGGGGAGGTGGATGTGGTGGTG
GGGTTGGAGGCGCTTGTCACGTTGGCACGAAAGAAGCGCAAGGCCGAGCA
AACTGCGAGGGAGAAAGAGGGAGGAAAGGAGAGAGGGAGGGGAGGACTAA
GCGTGTCGAGTCAACGATTTAGGGCGGTTGAGACATGGGCAGCCAAGGGG
AGGACTATGATAAAGCACGCCCTGGCACGAGAATTGGCAGAGAGTGAGGG
GAAGAGTGAGACAGCAGCAGCAGCAGCAGCAGCAGCAGAAAAGGGGGGAG
AAAAAGCGAAAGCAAAGGAGGCGGCGGCGGCCAACGCGGCCAAAATAGCG
GCGGCACCGACACGGCAGGAGCTGCAGCAGGAGCAGGAGCAGCAGCGTGA
GCAGCAGCATGGGCAACAGTAG
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Synonyms
Publications