NO10G02640, NO10G02640 (gene) Nannochloropsis oceanica

Overview
NameNO10G02640
Unique NameNO10G02640
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1418
Alignment locationchr10:723591..725008 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:723591..725008 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO10G02640 vs. NCBI_GenBank
Match: EWM25483.1 (hypothetical protein Naga_100583g3 [Nannochloropsis gaditana])

HSP 1 Score: 374.8 bits (961), Expect = 3.100e-100
Identity = 193/303 (63.70%), Postives = 216/303 (71.29%), Query Frame = 0 
Query:    1 MQPRSSSSNSSGRQIGRIVATTAALGLVVALVAQQAQAFFVPTPGSRAMHQRQSPAQAHQRRPAACFLTSS--------------KPSSRLYARISEKPGDQQDREGESEQGLPKVL-EDLPKLTRGQEEAIDSDMGVIPPETEPLSGEAWTAEVEKRLQDMYERGTYDPTPINLTPKELAKQQWVDEFLNKEERPIRFTPEYWFGTWTRGDIKFSSAGRGLKSFGFALVGIGIVTLIFLLEDELTNPIFEDYQKWDGNDFLHFGGDLAGWAASIPARASDYISHFNWIEWSARVAARAGAAP 289
            MQ ++      GR    +++    +G  VAL      AF  P          +     HQ     C L  +                SSRL+ARISEKPGD+QDRE   EQGLPKVL      LTR QEEA+D  MGVIPPE EPLSGEAWTAEVEKRLQ+MYE+GTYDPTP+NLTPKELA QQWVD+FLNKEERPIRFTPEYWFGTWTRGDIKFSSAGRGLKSFGFALVGIG+VTL+FLLEDEL NP F+DY++WDGNDF HFG DL  W  +IPAR SDY+SHFNW+EWSARVAARAGAAP
Sbjct:    1 MQQKNKGHTRCGR--WSLLSVAGLVGFTVALGMHHTHAFVAPIAPHGLPENLRVVRHRHQLGSQTCQLVQTPRFWSPFTGQLRGKSGSSRLHARISEKPGDKQDREEGGEQGLPKVLXXXXXXLTRQQEEAVDLSMGVIPPEQEPLSGEAWTAEVEKRLQEMYEKGTYDPTPVNLTPKELANQQWVDDFLNKEERPIRFTPEYWFGTWTRGDIKFSSAGRGLKSFGFALVGIGLVTLMFLLEDELVNPAFDDYRQWDGNDFFHFGEDLGAWVTAIPARTSDYLSHFNWVEWSARVAARAGAAP 301
The following BLAST results are available for this feature:
BLAST of NO10G02640 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25483.13.100e-10063.70hypothetical protein Naga_100583g3 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G02640.1NO10G02640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585929gene_3947Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G02640.1NO10G02640.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G02640 ID=NO10G02640|Name=NO10G02640|organism=Nannochloropsis oceanica|type=gene|length=1418bp
ATGCAGCCGCGAAGCAGCAGCAGTAATAGCAGTGGACGGCAGATAGGGCG
AATTGTGGCGACGACTGCGGCTTTAGGCCTGGTTGTGGCCTTGGTGGCCC
AACAAGCGCAAGCGTTCTTCGTGCCGACACCTGGCAGCAGAGCAATGCAC
CAACGTCAGTCTCCTGCCCAAGCACATCAGCGACGACCCGCTGCATGCTT
TCTAACAAGCAGTAAACCAAGCAGTCGGCTGTACGCACGGATCTCGGAAA
AGCCAGGAGACCAGCAAGATAGGGAGGGAGAAAGCGAGCAAGGGCTCCCC
AAAGTGCTGGAGGACCTGCCCAAGCTGACCCGTGGACAGGAAGAGGCGAT
AGACAGTGATATGGGCGTGATACCACCAGAGACGGAGCCCTTGTCGGGGG
AGGCCTGGACGGCGGAGGTTGAGAAAAGGCTTCAAGACATGTATGAGAGG
GGCACGTATGACCCGACCCCGATTAATTTGACCCCCAAAGAGCTGGCCAA
ACAACAATGGGTTGACGAGTTTCTGAACAAGGAAGAGCGGCCGATTCGTT
TTACGCCTGAGTATTGGTTCGGGACATGGACCAGGGGGGACATCAAATTC
TCGTCGGCGGGGCGGGGGCTAAAGTCTTTTGGGTTTGCCCTTGTGGGGAT
CGGTATCGTCACCCTTATCTTCTTGTTGGAGGATGAGTTGACTAATCCGA
TATTCGAGGACTACCAAAAGTGGGACGGGAACGACTTTCTCCATTTCGGG
GGCGATCTGGCAGGCTGGGCGGCGTCTATTCCAGCGAGGGCGAGTGATTA
TATTTCGCACTTCAACTGGATTGAGTGGAGTGCGCGGGTGGCGGCGCGGG
CGGGGGCGGCGCCGAGgtggcagaatcagctgttgggtctgccttctatt
ccgccgcagtaaaccttagcagtgttatttcgaaaatgttctgtcttttg
ccccttccctcgtcctctttctccaaccatgattcacaaaccatatgtga
attaagagacgtacaaaaacttgaggggaaaagatgtcaaacgatgtgtt
ggctacgagctgtgcaagaatttgctgcatctgatgtccaagatatacat
acttttttatttttgtatcctttattgccaggttgaggcgataccttttc
atttcatgatatctttgtagccatccacccactgtttccctttttcagCT
CAAGCCTTGAGCCATGCCTCTACATCATTGGTAGCAGCAGCCACAGTAGT
CGCAGCGGCAGCCGGGCAGCGGCAGCCATTCTGGCCAAGCTGGTGATTCT
GCTGTCTGCGCCTGCTAAGGAGACTGCGCCCGCGAACGATTATGCAAGGG
GATGTGCCGGTACTGCCGCTGCTGCTGCTGCTCCTCCTCCTCCTCTTGCA
TCATTTGCTGCTCCTTAA
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protein sequence of NO10G02640.1

>NO10G02640.1-protein ID=NO10G02640.1-protein|Name=NO10G02640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=362bp
MQPRSSSSNSSGRQIGRIVATTAALGLVVALVAQQAQAFFVPTPGSRAMH
QRQSPAQAHQRRPAACFLTSSKPSSRLYARISEKPGDQQDREGESEQGLP
KVLEDLPKLTRGQEEAIDSDMGVIPPETEPLSGEAWTAEVEKRLQDMYER
GTYDPTPINLTPKELAKQQWVDEFLNKEERPIRFTPEYWFGTWTRGDIKF
SSAGRGLKSFGFALVGIGIVTLIFLLEDELTNPIFEDYQKWDGNDFLHFG
GDLAGWAASIPARASDYISHFNWIEWSARVAARAGAAPSSSLEPCLYIIG
SSSHSSRSGSRAAAAILAKLVILLSAPAKETAPANDYARGCAGTAAAAAA
PPPPLASFAAP*
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Synonyms
Publications