NO10G02640.1, NO10G02640.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G02640.1
Unique NameNO10G02640.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1086
Alignment locationchr10:723591..725008 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:723591..725008 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G02640.1 vs.
Match: EWM25483.1 (hypothetical protein Naga_100583g3 [Nannochloropsis gaditana])

HSP 1 Score: 385.6 bits (989), Expect = 1.700e-103
Identity = 197/303 (65.02%), Postives = 221/303 (72.94%), Query Frame = 0 
Query:    1 MQPRSSSSNSSGRQIGRIVATTAALGLVVALVAQQAQAFFVPTPGSRAMHQRQSPAQAHQRRPAACFLTSS--------------KPSSRLYARISEKPGDQQDREGESEQGLPKVLED-LPKLTRGQEEAIDSDMGVIPPETEPLSGEAWTAEVEKRLQDMYERGTYDPTPINLTPKELAKQQWVDEFLNKEERPIRFTPEYWFGTWTRGDIKFSSAGRGLKSFGFALVGIGIVTLIFLLEDELTNPIFEDYQKWDGNDFLHFGGDLAGWAASIPARASDYISHFNWIEWSARVAARAGAAP 289
            MQ ++      GR    +++    +G  VAL      AF  P          +     HQ     C L  +                SSRL+ARISEKPGD+QDRE   EQGLPKVLE+ LPKLTR QEEA+D  MGVIPPE EPLSGEAWTAEVEKRLQ+MYE+GTYDPTP+NLTPKELA QQWVD+FLNKEERPIRFTPEYWFGTWTRGDIKFSSAGRGLKSFGFALVGIG+VTL+FLLEDEL NP F+DY++WDGNDF HFG DL  W  +IPAR SDY+SHFNW+EWSARVAARAGAAP
Sbjct:    1 MQQKNKGHTRCGRW--SLLSVAGLVGFTVALGMHHTHAFVAPIAPHGLPENLRVVRHRHQLGSQTCQLVQTPRFWSPFTGQLRGKSGSSRLHARISEKPGDKQDREEGGEQGLPKVLEEGLPKLTRQQEEAVDLSMGVIPPEQEPLSGEAWTAEVEKRLQEMYEKGTYDPTPVNLTPKELANQQWVDDFLNKEERPIRFTPEYWFGTWTRGDIKFSSAGRGLKSFGFALVGIGLVTLMFLLEDELVNPAFDDYRQWDGNDFFHFGEDLGAWVTAIPARTSDYLSHFNWVEWSARVAARAGAAP 301
The following BLAST results are available for this feature:
BLAST of NO10G02640.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25483.11.700e-10365.02hypothetical protein Naga_100583g3 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G02640NO10G02640Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G02640.1NO10G02640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G02640.1.cds1NO10G02640.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G02640.1.cds2NO10G02640.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G02640.1 ID=NO10G02640.1|Name=NO10G02640.1|organism=Nannochloropsis oceanica|type=mRNA|length=1086bp
ATGCAGCCGCGAAGCAGCAGCAGTAATAGCAGTGGACGGCAGATAGGGCG
AATTGTGGCGACGACTGCGGCTTTAGGCCTGGTTGTGGCCTTGGTGGCCC
AACAAGCGCAAGCGTTCTTCGTGCCGACACCTGGCAGCAGAGCAATGCAC
CAACGTCAGTCTCCTGCCCAAGCACATCAGCGACGACCCGCTGCATGCTT
TCTAACAAGCAGTAAACCAAGCAGTCGGCTGTACGCACGGATCTCGGAAA
AGCCAGGAGACCAGCAAGATAGGGAGGGAGAAAGCGAGCAAGGGCTCCCC
AAAGTGCTGGAGGACCTGCCCAAGCTGACCCGTGGACAGGAAGAGGCGAT
AGACAGTGATATGGGCGTGATACCACCAGAGACGGAGCCCTTGTCGGGGG
AGGCCTGGACGGCGGAGGTTGAGAAAAGGCTTCAAGACATGTATGAGAGG
GGCACGTATGACCCGACCCCGATTAATTTGACCCCCAAAGAGCTGGCCAA
ACAACAATGGGTTGACGAGTTTCTGAACAAGGAAGAGCGGCCGATTCGTT
TTACGCCTGAGTATTGGTTCGGGACATGGACCAGGGGGGACATCAAATTC
TCGTCGGCGGGGCGGGGGCTAAAGTCTTTTGGGTTTGCCCTTGTGGGGAT
CGGTATCGTCACCCTTATCTTCTTGTTGGAGGATGAGTTGACTAATCCGA
TATTCGAGGACTACCAAAAGTGGGACGGGAACGACTTTCTCCATTTCGGG
GGCGATCTGGCAGGCTGGGCGGCGTCTATTCCAGCGAGGGCGAGTGATTA
TATTTCGCACTTCAACTGGATTGAGTGGAGTGCGCGGGTGGCGGCGCGGG
CGGGGGCGGCGCCGAGCTCAAGCCTTGAGCCATGCCTCTACATCATTGGT
AGCAGCAGCCACAGTAGTCGCAGCGGCAGCCGGGCAGCGGCAGCCATTCT
GGCCAAGCTGGTGATTCTGCTGTCTGCGCCTGCTAAGGAGACTGCGCCCG
CGAACGATTATGCAAGGGGATGTGCCGGTACTGCCGCTGCTGCTGCTGCT
CCTCCTCCTCCTCTTGCATCATTTGCTGCTCCTTAA
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protein sequence of NO10G02640.1

>NO10G02640.1-protein ID=NO10G02640.1-protein|Name=NO10G02640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=362bp
MQPRSSSSNSSGRQIGRIVATTAALGLVVALVAQQAQAFFVPTPGSRAMH
QRQSPAQAHQRRPAACFLTSSKPSSRLYARISEKPGDQQDREGESEQGLP
KVLEDLPKLTRGQEEAIDSDMGVIPPETEPLSGEAWTAEVEKRLQDMYER
GTYDPTPINLTPKELAKQQWVDEFLNKEERPIRFTPEYWFGTWTRGDIKF
SSAGRGLKSFGFALVGIGIVTLIFLLEDELTNPIFEDYQKWDGNDFLHFG
GDLAGWAASIPARASDYISHFNWIEWSARVAARAGAAPSSSLEPCLYIIG
SSSHSSRSGSRAAAAILAKLVILLSAPAKETAPANDYARGCAGTAAAAAA
PPPPLASFAAP*
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mRNA from alignment at chr10:723591..725008+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G02640.1 ID=NO10G02640.1|Name=NO10G02640.1|organism=Nannochloropsis oceanica|type=mRNA|length=1418bp|location=Sequence derived from alignment at chr10:723591..725008+ (Nannochloropsis oceanica)
ATGCAGCCGCGAAGCAGCAGCAGTAATAGCAGTGGACGGCAGATAGGGCG
AATTGTGGCGACGACTGCGGCTTTAGGCCTGGTTGTGGCCTTGGTGGCCC
AACAAGCGCAAGCGTTCTTCGTGCCGACACCTGGCAGCAGAGCAATGCAC
CAACGTCAGTCTCCTGCCCAAGCACATCAGCGACGACCCGCTGCATGCTT
TCTAACAAGCAGTAAACCAAGCAGTCGGCTGTACGCACGGATCTCGGAAA
AGCCAGGAGACCAGCAAGATAGGGAGGGAGAAAGCGAGCAAGGGCTCCCC
AAAGTGCTGGAGGACCTGCCCAAGCTGACCCGTGGACAGGAAGAGGCGAT
AGACAGTGATATGGGCGTGATACCACCAGAGACGGAGCCCTTGTCGGGGG
AGGCCTGGACGGCGGAGGTTGAGAAAAGGCTTCAAGACATGTATGAGAGG
GGCACGTATGACCCGACCCCGATTAATTTGACCCCCAAAGAGCTGGCCAA
ACAACAATGGGTTGACGAGTTTCTGAACAAGGAAGAGCGGCCGATTCGTT
TTACGCCTGAGTATTGGTTCGGGACATGGACCAGGGGGGACATCAAATTC
TCGTCGGCGGGGCGGGGGCTAAAGTCTTTTGGGTTTGCCCTTGTGGGGAT
CGGTATCGTCACCCTTATCTTCTTGTTGGAGGATGAGTTGACTAATCCGA
TATTCGAGGACTACCAAAAGTGGGACGGGAACGACTTTCTCCATTTCGGG
GGCGATCTGGCAGGCTGGGCGGCGTCTATTCCAGCGAGGGCGAGTGATTA
TATTTCGCACTTCAACTGGATTGAGTGGAGTGCGCGGGTGGCGGCGCGGG
CGGGGGCGGCGCCGAGGTGGCAGAATCAGCTGTTGGGTCTGCCTTCTATT
CCGCCGCAGTAAACCTTAGCAGTGTTATTTCGAAAATGTTCTGTCTTTTG
CCCCTTCCCTCGTCCTCTTTCTCCAACCATGATTCACAAACCATATGTGA
ATTAAGAGACGTACAAAAACTTGAGGGGAAAAGATGTCAAACGATGTGTT
GGCTACGAGCTGTGCAAGAATTTGCTGCATCTGATGTCCAAGATATACAT
ACTTTTTTATTTTTGTATCCTTTATTGCCAGGTTGAGGCGATACCTTTTC
ATTTCATGATATCTTTGTAGCCATCCACCCACTGTTTCCCTTTTTCAGCT
CAAGCCTTGAGCCATGCCTCTACATCATTGGTAGCAGCAGCCACAGTAGT
CGCAGCGGCAGCCGGGCAGCGGCAGCCATTCTGGCCAAGCTGGTGATTCT
GCTGTCTGCGCCTGCTAAGGAGACTGCGCCCGCGAACGATTATGCAAGGG
GATGTGCCGGTACTGCCGCTGCTGCTGCTGCTCCTCCTCCTCCTCTTGCA
TCATTTGCTGCTCCTTAA
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Coding sequence (CDS) from alignment at chr10:723591..725008+

>NO10G02640.1 ID=NO10G02640.1|Name=NO10G02640.1|organism=Nannochloropsis oceanica|type=CDS|length=1086bp|location=Sequence derived from alignment at chr10:723591..725008+ (Nannochloropsis oceanica)
ATGCAGCCGCGAAGCAGCAGCAGTAATAGCAGTGGACGGCAGATAGGGCG
AATTGTGGCGACGACTGCGGCTTTAGGCCTGGTTGTGGCCTTGGTGGCCC
AACAAGCGCAAGCGTTCTTCGTGCCGACACCTGGCAGCAGAGCAATGCAC
CAACGTCAGTCTCCTGCCCAAGCACATCAGCGACGACCCGCTGCATGCTT
TCTAACAAGCAGTAAACCAAGCAGTCGGCTGTACGCACGGATCTCGGAAA
AGCCAGGAGACCAGCAAGATAGGGAGGGAGAAAGCGAGCAAGGGCTCCCC
AAAGTGCTGGAGGACCTGCCCAAGCTGACCCGTGGACAGGAAGAGGCGAT
AGACAGTGATATGGGCGTGATACCACCAGAGACGGAGCCCTTGTCGGGGG
AGGCCTGGACGGCGGAGGTTGAGAAAAGGCTTCAAGACATGTATGAGAGG
GGCACGTATGACCCGACCCCGATTAATTTGACCCCCAAAGAGCTGGCCAA
ACAACAATGGGTTGACGAGTTTCTGAACAAGGAAGAGCGGCCGATTCGTT
TTACGCCTGAGTATTGGTTCGGGACATGGACCAGGGGGGACATCAAATTC
TCGTCGGCGGGGCGGGGGCTAAAGTCTTTTGGGTTTGCCCTTGTGGGGAT
CGGTATCGTCACCCTTATCTTCTTGTTGGAGGATGAGTTGACTAATCCGA
TATTCGAGGACTACCAAAAGTGGGACGGGAACGACTTTCTCCATTTCGGG
GGCGATCTGGCAGGCTGGGCGGCGTCTATTCCAGCGAGGGCGAGTGATTA
TATTTCGCACTTCAACTGGATTGAGTGGAGTGCGCGGGTGGCGGCGCGGG
CGGGGGCGGCGCCGAGCTCAAGCCTTGAGCCATGCCTCTACATCATTGGT
AGCAGCAGCCACAGTAGTCGCAGCGGCAGCCGGGCAGCGGCAGCCATTCT
GGCCAAGCTGGTGATTCTGCTGTCTGCGCCTGCTAAGGAGACTGCGCCCG
CGAACGATTATGCAAGGGGATGTGCCGGTACTGCCGCTGCTGCTGCTGCT
CCTCCTCCTCCTCTTGCATCATTTGCTGCTCCTTAA
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Synonyms
Publications