NO10G02500, NO10G02500 (gene) Nannochloropsis oceanica

Overview
NameNO10G02500
Unique NameNO10G02500
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length869
Alignment locationchr10:672828..673696 +

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Properties
Property NameValue
Description60s ribosomal protein l44
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:672828..673696 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0005198structural molecule activity
Vocabulary: INTERPRO
TermDefinition
IPR011332Ribosomal_zn-bd
IPR000552Ribosomal_L44e
Homology
[Close]
BLAST of NO10G02500 vs. NCBI_GenBank
Match: EWM25346.1 (60s ribosomal protein l44 [Nannochloropsis gaditana])

HSP 1 Score: 205.3 bits (521), Expect = 9.300e-50
Identity = 101/104 (97.12%), Postives = 103/104 (99.04%), Query Frame = 0 
Query:    1 MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGYGGQTKPILHKKAKTTKKVTLRLECKDCKTKKQLVIKRTKHFELGEKKKTSGHQY 105
            MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGYGGQTKPILHKKAKTTKKVTLRLECK+CKTKKQLVIKRTKHFELGEKKK +GHQY
Sbjct:    1 MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGYGGQTKPILHKKAKTTKKVTLRLECKECKTKKQLVIKRTKHFELGEKKKATGHQY 104
[Close]
BLAST of NO10G02500 vs. NCBI_GenBank
Match: XP_008861702.1 (60S ribosomal protein L44 [Aphanomyces invadans] >ETW10291.1 60S ribosomal protein L44 [Aphanomyces invadans])

HSP 1 Score: 182.6 bits (462), Expect = 6.400e-43
Identity = 88/104 (84.62%), Postives = 97/104 (93.27%), Query Frame = 0 
Query:    1 MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGYGGQTKPILHKKAKTTKKVTLRLECKDCKTKKQLVIKRTKHFELGEKKKTSGHQY 105
            MV IPKER+TFCKGKKC+KHTVHKVTQYKAGKAS YAQG RRY+ KQQG+GGQTKP+ HKKAKTTKK+TLR+ECK+CK KKQL IKRTKHFELGEKKK+SGHQY
Sbjct:    1 MVNIPKERRTFCKGKKCRKHTVHKVTQYKAGKASKYAQGARRYNEKQQGFGGQTKPVFHKKAKTTKKITLRMECKECKAKKQLPIKRTKHFELGEKKKSSGHQY 104
[Close]
BLAST of NO10G02500 vs. NCBI_GenBank
Match: OQS03635.1 (60S ribosomal protein L44 [Thraustotheca clavata])

HSP 1 Score: 182.2 bits (461), Expect = 8.400e-43
Identity = 88/104 (84.62%), Postives = 96/104 (92.31%), Query Frame = 0 
Query:    1 MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGYGGQTKPILHKKAKTTKKVTLRLECKDCKTKKQLVIKRTKHFELGEKKKTSGHQY 105
            MV IPKER+TFCKGKKC+KHT HKVTQYKAGKAS YAQG RRY+ KQQG+GGQTKP+ HKKAKTTKK+TLR+ECK+CKTKKQL IKRTKHFELGEKKKTSGH Y
Sbjct:    1 MVNIPKERRTFCKGKKCRKHTTHKVTQYKAGKASKYAQGARRYNEKQQGFGGQTKPVFHKKAKTTKKITLRMECKECKTKKQLPIKRTKHFELGEKKKTSGHTY 104
[Close]
BLAST of NO10G02500 vs. NCBI_GenBank
Match: XP_008616927.1 (60S ribosomal protein L44 [Saprolegnia diclina VS20] >EQC29623.1 60S ribosomal protein L44 [Saprolegnia diclina VS20] >OQR84387.1 60S ribosomal protein L44 [Achlya hypogyna])

HSP 1 Score: 180.3 bits (456), Expect = 3.200e-42
Identity = 87/104 (83.65%), Postives = 96/104 (92.31%), Query Frame = 0 
Query:    1 MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGYGGQTKPILHKKAKTTKKVTLRLECKDCKTKKQLVIKRTKHFELGEKKKTSGHQY 105
            MV IPKER+TFCKGKKC+KHTVHKVTQYKAGKAS +AQG RRY+ KQQG+GGQTKP+ HKKAKTTKK+TLR+ECK+CK KKQL IKRTKHFELGEKKKTSGH Y
Sbjct:    1 MVNIPKERRTFCKGKKCRKHTVHKVTQYKAGKASKFAQGARRYNEKQQGFGGQTKPVFHKKAKTTKKITLRMECKECKAKKQLPIKRTKHFELGEKKKTSGHTY 104
[Close]
BLAST of NO10G02500 vs. NCBI_GenBank
Match: XP_009039505.1 (RL44_PICJA 60S ribosomal protein L44 [Aureococcus anophagefferens] >EGB05663.1 RL44_PICJA 60S ribosomal protein L44 [Aureococcus anophagefferens])

HSP 1 Score: 178.7 bits (452), Expect = 9.300e-42
Identity = 86/104 (82.69%), Postives = 94/104 (90.38%), Query Frame = 0 
Query:    1 MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGYGGQTKPILHKKAKTTKKVTLRLECKDCKTKKQLVIKRTKHFELGEKKKTSGHQY 105
            MV +PKERKT+CK KKC+KHT HKVTQYKAGKASN+AQGKRRYD KQ G+GGQTKP+ HKKAKTTKKVTLRLECK+CK KKQL IKR KHFELGEKKKT+GH Y
Sbjct:    1 MVNVPKERKTYCKAKKCRKHTTHKVTQYKAGKASNFAQGKRRYDMKQMGFGGQTKPVFHKKAKTTKKVTLRLECKECKAKKQLTIKRCKHFELGEKKKTTGHTY 104
[Close]
BLAST of NO10G02500 vs. NCBI_GenBank
Match: XP_009538087.1 (hypothetical protein PHYSODRAFT_289114 [Phytophthora sojae] >EGZ06190.1 hypothetical protein PHYSODRAFT_289114 [Phytophthora sojae])

HSP 1 Score: 177.9 bits (450), Expect = 1.600e-41
Identity = 84/104 (80.77%), Postives = 98/104 (94.23%), Query Frame = 0 
Query:    1 MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGYGGQTKPILHKKAKTTKKVTLRLECKDCKTKKQLVIKRTKHFELGEKKKTSGHQY 105
            MV +PKER+TFCKGKKC+KHTVHK+TQYKAGKAS YAQG RRY+ KQ+G+GGQTKP+ HKKAKTTKK+TLR+ECK+CKTKKQL +KRTKHFELGEKKK++GHQY
Sbjct:    1 MVNMPKERRTFCKGKKCQKHTVHKITQYKAGKASKYAQGARRYNDKQKGFGGQTKPVFHKKAKTTKKITLRMECKECKTKKQLPMKRTKHFELGEKKKSTGHQY 104
[Close]
BLAST of NO10G02500 vs. NCBI_GenBank
Match: XP_008914558.1 (60S ribosomal protein L44 [Phytophthora parasitica INRA-310] >ETI32166.1 60S ribosomal protein L44 [Phytophthora parasitica P1569] >ETK72541.1 60S ribosomal protein L44 [Phytophthora parasitica] >ETL25996.1 60S ribosomal protein L44 [Phytophthora parasitica] >ETL79205.1 60S ribosomal protein L44 [Phytophthora parasitica] >ETM32452.1 60S ribosomal protein L44 [Phytophthora parasitica] >ETN00194.1 60S ribosomal protein L44 [Phytophthora parasitica INRA-310] >ETO60904.1 60S ribosomal protein L44 [Phytophthora parasitica P1976] >ETP02025.1 60S ribosomal protein L44 [Phytophthora parasitica CJ01A1] >ETP30185.1 60S ribosomal protein L44 [Phytophthora parasitica P10297] >KUF95807.1 60S ribosomal protein L44 [Phytophthora nicotianae] >KUF97950.1 hypothetical protein AM588_10008187 [Phytophthora nicotianae] >OWZ03314.1 60S ribosomal protein L44 [Phytophthora megakarya] >POM77664.1 60S ribosomal protein L44 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 177.9 bits (450), Expect = 1.600e-41
Identity = 84/104 (80.77%), Postives = 98/104 (94.23%), Query Frame = 0 
Query:    1 MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGYGGQTKPILHKKAKTTKKVTLRLECKDCKTKKQLVIKRTKHFELGEKKKTSGHQY 105
            MV +PKER+TFCKGKKC+KHTVHK+TQYKAGKAS YAQG RRY+ KQ+G+GGQTKP+ HKKAKTTKK+TLR+ECK+CKTKKQL +KRTKHFELGEKKK++GHQY
Sbjct:    1 MVNMPKERRTFCKGKKCQKHTVHKITQYKAGKASKYAQGARRYNDKQKGFGGQTKPVFHKKAKTTKKITLRMECKECKTKKQLPMKRTKHFELGEKKKSAGHQY 104
[Close]
BLAST of NO10G02500 vs. NCBI_GenBank
Match: XP_009827495.1 (60S ribosomal protein L44 [Aphanomyces astaci] >ETV82824.1 60S ribosomal protein L44 [Aphanomyces astaci])

HSP 1 Score: 177.6 bits (449), Expect = 2.100e-41
Identity = 86/104 (82.69%), Postives = 95/104 (91.35%), Query Frame = 0 
Query:    1 MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGYGGQTKPILHKKAKTTKKVTLRLECKDCKTKKQLVIKRTKHFELGEKKKTSGHQY 105
            MV IPKER+TFCK KKC+KHTVHKVTQYKAGKAS +AQG RRY+ KQQG+GGQTKP+ HKKAKTTKK+TLR+ECKDCK KKQL IKRTKHFELGEKKK+SGH Y
Sbjct:    1 MVNIPKERRTFCKSKKCRKHTVHKVTQYKAGKASKFAQGARRYNEKQQGFGGQTKPVFHKKAKTTKKITLRMECKDCKAKKQLPIKRTKHFELGEKKKSSGHVY 104
[Close]
BLAST of NO10G02500 vs. NCBI_GenBank
Match: AFN65682.1 (ribosomal protein L44 [Aurantiochytrium sp. KRS101])

HSP 1 Score: 175.6 bits (444), Expect = 7.900e-41
Identity = 85/104 (81.73%), Postives = 97/104 (93.27%), Query Frame = 0 
Query:    1 MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGYGGQTKPILHKKAKTTKKVTLRLECKDCKTKKQLVIKRTKHFELGEKKKTSGHQY 105
            MV +PKER+TFCKGK+C+KHTVHKVTQYKAGKASN+AQGKRRYDRKQ+GYGGQTKPI HKKAKTTKKVTLRLECK+CKTK Q+ +KR K FELG+KK+ +GHQY
Sbjct:    1 MVNVPKERRTFCKGKQCRKHTVHKVTQYKAGKASNFAQGKRRYDRKQKGYGGQTKPIFHKKAKTTKKVTLRLECKECKTKCQIGLKRCKTFELGQKKEAAGHQY 104
[Close]
BLAST of NO10G02500 vs. NCBI_GenBank
Match: XP_002998859.1 (60S ribosomal protein L44 [Phytophthora infestans T30-4] >EEY69005.1 60S ribosomal protein L44 [Phytophthora infestans T30-4])

HSP 1 Score: 174.9 bits (442), Expect = 1.300e-40
Identity = 82/104 (78.85%), Postives = 97/104 (93.27%), Query Frame = 0 
Query:    1 MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGYGGQTKPILHKKAKTTKKVTLRLECKDCKTKKQLVIKRTKHFELGEKKKTSGHQY 105
            MV +PKER+T+CKGKKC+KHTVHK+TQYKAGKAS YAQG RRY+ KQ+G+GGQTKP+ HKKAKTTKK+TLR+ECK+CK KKQL +KRTKHFELGEKKK++GHQY
Sbjct:    1 MVNMPKERRTYCKGKKCQKHTVHKITQYKAGKASKYAQGARRYNDKQKGFGGQTKPVFHKKAKTTKKITLRMECKECKVKKQLPMKRTKHFELGEKKKSAGHQY 104
The following BLAST results are available for this feature:
BLAST of NO10G02500 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25346.19.300e-5097.1260s ribosomal protein l44 [Nannochloropsis gaditan... [more]
XP_008861702.16.400e-4384.6260S ribosomal protein L44 [Aphanomyces invadans] >... [more]
OQS03635.18.400e-4384.6260S ribosomal protein L44 [Thraustotheca clavata][more]
XP_008616927.13.200e-4283.6560S ribosomal protein L44 [Saprolegnia diclina VS2... [more]
XP_009039505.19.300e-4282.69RL44_PICJA 60S ribosomal protein L44 [Aureococcus ... [more]
XP_009538087.11.600e-4180.77hypothetical protein PHYSODRAFT_289114 [Phytophtho... [more]
XP_008914558.11.600e-4180.7760S ribosomal protein L44 [Phytophthora parasitica... [more]
XP_009827495.12.100e-4182.6960S ribosomal protein L44 [Aphanomyces astaci] >ET... [more]
AFN65682.17.900e-4181.73ribosomal protein L44 [Aurantiochytrium sp. KRS101... [more]
XP_002998859.11.300e-4078.8560S ribosomal protein L44 [Phytophthora infestans ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001115NSK001115Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G02500.1NO10G02500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585979gene_3963Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100005g5gene5039Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G02500.1NO10G02500.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G02500 ID=NO10G02500|Name=NO10G02500|organism=Nannochloropsis oceanica|type=gene|length=869bp
ATGGTGTGCATCCCCAAAGAGCGCAAGACCTTTTGTAAGGGCAAGAAGTG
CAAGAAGCACACCGTCCACAAGGTCACGCAGTACAAGGCCGGCAAGGCCT
CCAACTACGCGCAGgtacgtagtcatgcttgatggagggaagtggaaaag
tatgaagggaaggtgtttgggaaagaagttgtggttgaaatcgaggacga
ttgcttccgcatttggcatggcgtctatgaagtagtagtcctgttctcgt
caaccggagcctgcctcagttgcgcacagaacaaagccgacccggtggca
gaagcctcagggcatctgagggaataagattaacgttactgatcatgggc
gtcgatgctgtcgggactggctgtacccatagttttgctcgagaggcgcg
ccaatgtattgcgcttatcttgggtctgtttgctcggtgacctcacggtg
gggaaggagaagagcatcaaggtcgaaagcgcacgagctgaagatctacg
cagtcgctcctgaagtggaagtatagcgcttagcaaaggctgggtggatt
tttttctgtgttggttttgactcgaattggctggtggtcctgagaatgaa
gacgaacaaataaaactcattacttccttttcttttgctccctctcccca
taccactaaacctaacagGGCAAGCGGCGTTATGACCGAAAGCAGCAAGG
GTACGGCGGGCAGACCAAGCCTATATTGCACAAGAAGGCCAAGACCACCA
AGAAGGTGACCCTGCGCCTCGAGTGCAAGGACTGTAAGACGAAGAAGCAG
CTTGTCATCAAGCGCACCAAGCACTTCGAGCTGGGCGAGAAGAAGAAGAC
CTCCGGTCACCAGTACTAA
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protein sequence of NO10G02500.1

>NO10G02500.1-protein ID=NO10G02500.1-protein|Name=NO10G02500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=105bp
MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGY
GGQTKPILHKKAKTTKKVTLRLECKDCKTKKQLVIKRTKHFELGEKKKTS
GHQY*
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Synonyms
Publications