NO10G02500.1, NO10G02500.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G02500.1
Unique NameNO10G02500.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length315
Alignment locationchr10:672828..673696 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:672828..673696 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO10G02500.1 vs.
Match: EWM25346.1 (60s ribosomal protein l44 [Nannochloropsis gaditana])

HSP 1 Score: 205.3 bits (521), Expect = 9.300e-50
Identity = 101/104 (97.12%), Postives = 103/104 (99.04%), Query Frame = 0 
Query:    1 MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGYGGQTKPILHKKAKTTKKVTLRLECKDCKTKKQLVIKRTKHFELGEKKKTSGHQY 105
            MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGYGGQTKPILHKKAKTTKKVTLRLECK+CKTKKQLVIKRTKHFELGEKKK +GHQY
Sbjct:    1 MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGYGGQTKPILHKKAKTTKKVTLRLECKECKTKKQLVIKRTKHFELGEKKKATGHQY 104
The following BLAST results are available for this feature:
BLAST of NO10G02500.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25346.19.300e-5097.1260s ribosomal protein l44 [Nannochloropsis gaditan... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G02500NO10G02500Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G02500.1NO10G02500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G02500.1.cds1NO10G02500.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G02500.1.cds2NO10G02500.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G02500.1 ID=NO10G02500.1|Name=NO10G02500.1|organism=Nannochloropsis oceanica|type=mRNA|length=315bp
ATGGTGTGCATCCCCAAAGAGCGCAAGACCTTTTGTAAGGGCAAGAAGTG
CAAGAAGCACACCGTCCACAAGGTCACGCAGTACAAGGCCGGCAAGGCCT
CCAACTACGCGCAGGGCAAGCGGCGTTATGACCGAAAGCAGCAAGGGTAC
GGCGGGCAGACCAAGCCTATATTGCACAAGAAGGCCAAGACCACCAAGAA
GGTGACCCTGCGCCTCGAGTGCAAGGACTGTAAGACGAAGAAGCAGCTTG
TCATCAAGCGCACCAAGCACTTCGAGCTGGGCGAGAAGAAGAAGACCTCC
GGTCACCAGTACTAA
back to top

protein sequence of NO10G02500.1

>NO10G02500.1-protein ID=NO10G02500.1-protein|Name=NO10G02500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=105bp
MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGY
GGQTKPILHKKAKTTKKVTLRLECKDCKTKKQLVIKRTKHFELGEKKKTS
GHQY*
back to top

mRNA from alignment at chr10:672828..673696+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G02500.1 ID=NO10G02500.1|Name=NO10G02500.1|organism=Nannochloropsis oceanica|type=mRNA|length=869bp|location=Sequence derived from alignment at chr10:672828..673696+ (Nannochloropsis oceanica)
ATGGTGTGCATCCCCAAAGAGCGCAAGACCTTTTGTAAGGGCAAGAAGTG
CAAGAAGCACACCGTCCACAAGGTCACGCAGTACAAGGCCGGCAAGGCCT
CCAACTACGCGCAGGTACGTAGTCATGCTTGATGGAGGGAAGTGGAAAAG
TATGAAGGGAAGGTGTTTGGGAAAGAAGTTGTGGTTGAAATCGAGGACGA
TTGCTTCCGCATTTGGCATGGCGTCTATGAAGTAGTAGTCCTGTTCTCGT
CAACCGGAGCCTGCCTCAGTTGCGCACAGAACAAAGCCGACCCGGTGGCA
GAAGCCTCAGGGCATCTGAGGGAATAAGATTAACGTTACTGATCATGGGC
GTCGATGCTGTCGGGACTGGCTGTACCCATAGTTTTGCTCGAGAGGCGCG
CCAATGTATTGCGCTTATCTTGGGTCTGTTTGCTCGGTGACCTCACGGTG
GGGAAGGAGAAGAGCATCAAGGTCGAAAGCGCACGAGCTGAAGATCTACG
CAGTCGCTCCTGAAGTGGAAGTATAGCGCTTAGCAAAGGCTGGGTGGATT
TTTTTCTGTGTTGGTTTTGACTCGAATTGGCTGGTGGTCCTGAGAATGAA
GACGAACAAATAAAACTCATTACTTCCTTTTCTTTTGCTCCCTCTCCCCA
TACCACTAAACCTAACAGGGCAAGCGGCGTTATGACCGAAAGCAGCAAGG
GTACGGCGGGCAGACCAAGCCTATATTGCACAAGAAGGCCAAGACCACCA
AGAAGGTGACCCTGCGCCTCGAGTGCAAGGACTGTAAGACGAAGAAGCAG
CTTGTCATCAAGCGCACCAAGCACTTCGAGCTGGGCGAGAAGAAGAAGAC
CTCCGGTCACCAGTACTAA
back to top

Coding sequence (CDS) from alignment at chr10:672828..673696+

>NO10G02500.1 ID=NO10G02500.1|Name=NO10G02500.1|organism=Nannochloropsis oceanica|type=CDS|length=315bp|location=Sequence derived from alignment at chr10:672828..673696+ (Nannochloropsis oceanica)
ATGGTGTGCATCCCCAAAGAGCGCAAGACCTTTTGTAAGGGCAAGAAGTG
CAAGAAGCACACCGTCCACAAGGTCACGCAGTACAAGGCCGGCAAGGCCT
CCAACTACGCGCAGGGCAAGCGGCGTTATGACCGAAAGCAGCAAGGGTAC
GGCGGGCAGACCAAGCCTATATTGCACAAGAAGGCCAAGACCACCAAGAA
GGTGACCCTGCGCCTCGAGTGCAAGGACTGTAAGACGAAGAAGCAGCTTG
TCATCAAGCGCACCAAGCACTTCGAGCTGGGCGAGAAGAAGAAGACCTCC
GGTCACCAGTACTAA
back to top
Synonyms
Publications