NO10G02420, NO10G02420 (gene) Nannochloropsis oceanica

Overview
NameNO10G02420
Unique NameNO10G02420
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2149
Alignment locationchr10:660013..662161 -

Link to JBrowse

Properties
Property NameValue
DescriptionDna topoisomerase 6 subunit a
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:660013..662161 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0005524ATP binding
GO:0003918DNA topoisomerase type II (ATP-hydrolyzing) activity
GO:0003677DNA binding
GO:0016787hydrolase activity
GO:0003677DNA binding
GO:0000166nucleotide binding
Vocabulary: Biological Process
TermDefinition
GO:0006259DNA metabolic process
GO:0006265DNA topological change
GO:0000737DNA catabolic process, endonucleolytic
GO:0016043cellular component organization
GO:0009056catabolic process
GO:0006259DNA metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005694chromosome
GO:0005622intracellular
Vocabulary: INTERPRO
TermDefinition
IPR036078Spo11/TopoVI_A_sf
IPR013049Spo11/TopoVI_A_N
IPR004085TopoVI_A
IPR002815Spo11/TopoVI_A
Homology
BLAST of NO10G02420 vs. NCBI_GenBank
Match: XP_004363895.2 (topoisomerase [Capsaspora owczarzaki ATCC 30864] >KJE92020.1 topoisomerase [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 532.3 bits (1370), Expect = 1.900e-147
Identity = 261/396 (65.91%), Postives = 321/396 (81.06%), Query Frame = 0
Query:  191 SVGSSKVDKVLEEVRLLMLRSRRYDAPNPSLAELGITTVREVSDMAPEGVLWEIEQTVLQVAGMILRGEGFSYQVPTRSATNQLYIAELDRIVLSDKVATRTFLNPREVRKTAITTRILQLVHEVLSKGIHITKRDMFYTDVKLFKDQKESDVVLDDVACMLGCTRSCLNVVASEKGLVVGRVQFEEDGDYIDCTRMGVGGKAIPPYIDKIAKIQSDAKFILLVEKEAAYMRLAEDRFYNKYPCIVITAKGQPDVATRLFLKKLKMELHIPVLGLVDSDPYGLKILSVYMTGSKNMSYDSASLTTSDIKWLGVRPSDLDKYNIPAQCRLDMTEHDMRTGRQLLQEEFIQKNPEWVKELELMLKMKKKAEIQALSAFGFQYITEDYLPRKLEKGDWI 587
            +V S     VL+EV  L    ++      +L ELGI+  REV+ M    V   IE+ V+Q A  IL G GFSY VP+R+++NQLY+ +L+RIVL   V+ R F +   VRKTAITTR+L LVHEVL+K IHITKRD+FYTDVKLF+ Q +SD VLDDVACM+GCTR+ LNVVASEKG+V+GRV F +DGD+IDCT+MGVGGKAIP  ID+I  +Q DA+F+LLVEK+AA+MRL+EDRFYN+YPCI+ITA+GQPDV+TRLFL  +K  L+IP+LGLVDSDPYGLKILSVY++GSKNMSYDSASLTTSDIKWLGVRPSDL+ YNIP +CRLDMTE D++ G+ LL+E+FI+ NP W+ ELELMLK K+KAEIQALS FGFQY+T+ YLP KL++GDWI
Sbjct:   24 AVASKDAAVVLQEVNKLAKAQQQSVKHRATLEELGISDAREVAVMDDADVAQTIERIVIQAAQSILAGTGFSYDVPSRASSNQLYVPQLERIVLKSAVSNRPFSSTATVRKTAITTRVLSLVHEVLNKRIHITKRDLFYTDVKLFEKQNDSDAVLDDVACMIGCTRTSLNVVASEKGVVIGRVTFRDDGDFIDCTKMGVGGKAIPSLIDRITDLQGDAQFVLLVEKDAAFMRLSEDRFYNQYPCIIITARGQPDVSTRLFLNMVKTRLNIPILGLVDSDPYGLKILSVYLSGSKNMSYDSASLTTSDIKWLGVRPSDLETYNIPKECRLDMTESDIKYGQDLLKEDFIKNNPAWMAELELMLKTKEKAEIQALSNFGFQYLTQTYLPLKLQQGDWI 419          
BLAST of NO10G02420 vs. NCBI_GenBank
Match: XP_009602544.1 (PREDICTED: DNA topoisomerase 6 subunit A [Nicotiana tomentosiformis] >XP_016469099.1 PREDICTED: DNA topoisomerase 6 subunit A-like [Nicotiana tabacum])

HSP 1 Score: 532.3 bits (1370), Expect = 1.900e-147
Identity = 256/388 (65.98%), Postives = 323/388 (83.25%), Query Frame = 0
Query:  200 VLEEVRLLMLRSRRYDAPNPSLAELGI-TTVREVSDMAPEGVLWEIEQTVLQVAGMILRGEGFSYQVPTRSATNQLYIAELDRIVLSDKVATRTFLNPREVRKTAITTRILQLVHEVLSKGIHITKRDMFYTDVKLFKDQKESDVVLDDVACMLGCTRSCLNVVASEKGLVVGRVQFEEDGDYIDCTRMGVGGKAIPPYIDKIAKIQSDAKFILLVEKEAAYMRLAEDRFYNKYPCIVITAKGQPDVATRLFLKKLKMELHIPVLGLVDSDPYGLKILSVYMTGSKNMSYDSASLTTSDIKWLGVRPSDLDKYNIPAQCRLDMTEHDMRTGRQLLQEEFIQKNPEWVKELELMLKMKKKAEIQALSAFGFQYITEDYLPRKLEKGDWI 587
            +L+ ++ L   S    +   +LA++G+ TT REV+D+  + V + I   +L +A  IL GEGFS+ VP+RS+ NQLY+ ELDRI+L DK + R F N   VRKT ITTRILQL+H++ +K IH+TKRD+FYTDVKLF+DQ +SD VLDDV+C+LGCTRS LNVVA+EKG+VVGR+ F +DGD IDCT+MG+GGKAIPP ID++  +QSDA FILLVEK+AAYMRLAEDRFYN++PCI++TAKGQPDVATRLFL+K+KMEL++PVL LVDSDPYGLKILSVY  GSKNMSYDSA+LTT DIKWLG+RPSDLDKY IP QCRL MTE D++TG+ LL+E+F++KNP WV+EL LM+K K+KAEIQALS+FGFQY++E YLP KL++ DW+
Sbjct:   33 ILQTLKNLKASSAASSSKTLTLADVGLSTTCREVTDLPIDEVQYNIGSVMLNLARSILAGEGFSFNVPSRSSANQLYVPELDRIILKDKSSVRAFSNVSTVRKTTITTRILQLIHQLCTKNIHVTKRDLFYTDVKLFQDQTQSDAVLDDVSCILGCTRSSLNVVAAEKGVVVGRLIFSDDGDMIDCTKMGMGGKAIPPNIDRVGDMQSDALFILLVEKDAAYMRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELNLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPDQCRLPMTEQDIKTGKDLLEEDFVKKNPAWVEELNLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQEQDWV 420          
BLAST of NO10G02420 vs. NCBI_GenBank
Match: XP_002294481.1 (topoisomerase [Thalassiosira pseudonana CCMP1335] >EED88315.1 topoisomerase [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 530.0 bits (1364), Expect = 9.200e-147
Identity = 255/347 (73.49%), Postives = 306/347 (88.18%), Query Frame = 0
Query:  240 VLWEIEQTVLQVAGMILRGEGFSYQVPTRSATNQLYIAELDRIVLSDKVATRTFLNPREVRKTAITTRILQLVHEVLSKGIHITKRDMFYTDVKLFKDQKESDVVLDDVACMLGCTRSCLNVVASEKGLVVGRVQFEEDGDYIDCTRMGVGGKAIPPYIDKIAKIQSDAKFILLVEKEAAYMRLAEDRFYNKYPCIVITAKGQPDVATRLFLKKLKMELHIPVLGLVDSDPYGLKILSVYMTGSKNMSYDSASLTTSDIKWLGVRPSDLDKYNIPAQCRLDMTEHDMRTGRQLLQEEFIQKNPEWVKELELMLKMKKKAEIQALSAFGFQYITEDYLPRKLEKGDWI 587
            V+  IE   +++A  +L  +GF  ++P+RSA+NQ+Y+ ELDRIVL DK  TR+FLN +E RK+AITTR+LQL+H VL K IHITKRD+FYTDVKLF DQ ESD VLDDVA M+GCTRS L+VVAS+KGLVVGR+ F EDGD+IDCT+MGVGGKAIPPYIDKI  IQSDA+FILLVEKEAAYMR+AEDRFY +YPCIVITAKGQPDVATR+FL ++  EL IPVL LVDSDPYGLKILSVYM+GSKNMSYDSASLTT DIKWLG+RPSDL++Y++P QCRL+MTE+D++TG++LLQE FI KNP+W+KEL++M+K K+KAEIQALS+FGFQYITE YLPRKL++GDWI
Sbjct:    6 VMEGIENVAVKIAKQVLAKQGFQLEIPSRSASNQVYVPELDRIVLGDKTGTRSFLNVKESRKSAITTRVLQLLHAVLLKRIHITKRDLFYTDVKLFVDQSESDGVLDDVATMIGCTRSNLHVVASDKGLVVGRISFFEDGDFIDCTKMGVGGKAIPPYIDKIENIQSDAEFILLVEKEAAYMRMAEDRFYQRYPCIVITAKGQPDVATRMFLSRITSELQIPVLALVDSDPYGLKILSVYMSGSKNMSYDSASLTTPDIKWLGLRPSDLNRYDLPDQCRLNMTENDIKTGKELLQEAFIMKNPKWMKELQIMVKTKQKAEIQALSSFGFQYITEVYLPRKLKEGDWI 352          
BLAST of NO10G02420 vs. NCBI_GenBank
Match: XP_002947507.1 (hypothetical protein VOLCADRAFT_103453 [Volvox carteri f. nagariensis] >EFJ51555.1 hypothetical protein VOLCADRAFT_103453 [Volvox carteri f. nagariensis])

HSP 1 Score: 529.6 bits (1363), Expect = 1.200e-146
Identity = 263/390 (67.44%), Postives = 314/390 (80.51%), Query Frame = 0
Query:  198 DKVLEEVRLLMLRSRRYDAPNPSLAELGIT-TVREVSDMAPEGVLWEIEQTVLQVAGMILRGEGFSYQVPTRSATNQLYIAELDRIVLSDKVATRTFLNPREVRKTAITTRILQLVHEVLSKGIHITKRDMFYTDVKLFKDQKESDVVLDDVACMLGCTRSCLNVVASEKGLVVGRVQFEEDGDYIDCTRMGVGGKAIPPYIDKIAKIQSDAKFILLVEKEAAYMRLAEDRFYNKYPCIVITAKGQPDVATRLFLKKLKMELHIPVLGLVDSDPYGLKILSVYMTGSKNMSYDSASLTTSDIKWLGVRPSDLDKYNIPAQCRLDMTEHDMRTGRQLLQEEFIQKNPEWVKELELMLKMKKKAEIQALSAFGFQYITEDYLPRKLEKGDWI 587
            + VL++V+ L    +  +    +L EL +    REV D   + VL EIE  +  VA  I+ GEGFS+ +P+R+  NQ+Y+ ELDRIVL D V+ R F N    RK AIT RIL LVHE++ K IH+TKRD+FYTDVKLF+DQ +SD VLDD+ACMLGCTRS LNVVASEKG+VVGR+ F EDGD+IDC RMGVGGKAIPP IDK++ I SDA FILLVEK+AA+MRLAEDRFYN YPCI++TAKGQPDVATRLFLK+LK  L IPVL LVDSDPYGLKILSVYM GS NMSYDS++LTT DIKWLGVRPSDLD++NIP QCRL MTE D++TGR+LL+E+FI+ NPEWVKELELML  K KAEIQALS+FGFQY+T+ YLP KL++GDW+
Sbjct:   23 EDVLKKVKALAAELKGNNEIEKTLGELKLPYNCREVVDKDTDEVLAEIETAIYAVAASIMDGEGFSFDIPSRAKGNQMYVPELDRIVLRDTVSKRPFANTATCRKAAITARILSLVHELVGKRIHVTKRDLFYTDVKLFEDQSQSDAVLDDLACMLGCTRSSLNVVASEKGVVVGRLSFREDGDFIDCQRMGVGGKAIPPNIDKVSDISSDAAFILLVEKDAAFMRLAEDRFYNTYPCIILTAKGQPDVATRLFLKRLKSTLKIPVLALVDSDPYGLKILSVYMKGSMNMSYDSSNLTTPDIKWLGVRPSDLDRFNIPQQCRLPMTEEDIKTGRRLLEEDFIRANPEWVKELELMLATKVKAEIQALSSFGFQYLTQVYLPLKLQEGDWV 412          
BLAST of NO10G02420 vs. NCBI_GenBank
Match: XP_005846746.1 (hypothetical protein CHLNCDRAFT_31596 [Chlorella variabilis] >EFN54644.1 hypothetical protein CHLNCDRAFT_31596 [Chlorella variabilis])

HSP 1 Score: 528.5 bits (1360), Expect = 2.700e-146
Identity = 266/402 (66.17%), Postives = 319/402 (79.35%), Query Frame = 0
Query:  189 LTSVGSSK---VDKVLEEVRLLMLRSRRYDAPNPSLAELGIT-TVREVSDMAPEGVLWEIEQTVLQVAGMILRGEGFSYQVPTRSATNQLYIAELDRIVLSDKVATRTFLNPREVRKTAITTRILQLVHEVLSKGIHITKRDMFYTDVKLFKDQKESDVVLDDVACMLGCTRSCLNVVASEKGLVVGRVQFEEDGDYIDCTRMGVGGKAIPPYIDKIAKIQSDAKFILLVEKEAAYMRLAEDRFYNKYPCIVITAKGQPDVATRLFLKKLKMELHIPVLGLVDSDPYGLKILSVYMTGSKNMSYDSASLTTSDIKWLGVRPSDLDKYNIPAQCRLDMTEHDMRTGRQLLQEEFIQKNPEWVKELELMLKMKKKAEIQALSAFGFQYITEDYLPRKLEKGDWI 587
            LT++   K   VD++L +V+ L  R +       +LAEL +    REV D     VL EIE  +L VA  +LRGEGF+Y +P+RS  NQLY+ ELDRIVL D  + R F N    RK  ITTRILQLVHE+ +K IH+TKRD+FYTDVKLF+DQ  SD +LDD+ACMLGCTRS L+VVASEKG+VVGR+ F EDGD IDC RMGVGGKAIPP IDK+  I SDA FILLVEK+AA+MRLAEDRFYN YPCI+ITAKGQPDVATRLFL+KLK  L IPVL LVDSDPYGLKILSVYM GS NMSYDS++LTT DIKWLGVRPSDLD+++IP QCRL MT+ D++TG++LL+E+F++ NPEWVKELE+M+  K KAEIQALS+FGFQY+++ YLP KL++GDWI
Sbjct:   15 LTALNKKKLKSVDEILGKVKWLAERVKGEPEVQKTLAELNLPHACREVVDKDAGAVLDEIETAILFVAASVLRGEGFTYTLPSRSKANQLYVPELDRIVLKDSQSHRAFANTSTCRKAVITTRILQLVHELCTKRIHVTKRDLFYTDVKLFEDQSNSDAILDDLACMLGCTRSSLHVVASEKGVVVGRLTFREDGDPIDCRRMGVGGKAIPPNIDKVDAITSDAMFILLVEKDAAFMRLAEDRFYNTYPCIIITAKGQPDVATRLFLRKLKQVLRIPVLALVDSDPYGLKILSVYMKGSMNMSYDSSNLTTPDIKWLGVRPSDLDRFSIPQQCRLPMTDEDIKTGKKLLEEDFVKANPEWVKELEIMVTTKVKAEIQALSSFGFQYLSQQYLPLKLQEGDWI 416          
BLAST of NO10G02420 vs. NCBI_GenBank
Match: XP_011400762.1 (DNA topoisomerase 6 subunit A [Auxenochlorella protothecoides] >KFM27775.1 DNA topoisomerase 6 subunit A [Auxenochlorella protothecoides])

HSP 1 Score: 528.5 bits (1360), Expect = 2.700e-146
Identity = 257/368 (69.84%), Postives = 307/368 (83.42%), Query Frame = 0
Query:  220 SLAELGIT-TVREVSDMAPEGVLWEIEQTVLQVAGMILRGEGFSYQVPTRSATNQLYIAELDRIVLSDKVATRTFLNPREVRKTAITTRILQLVHEVLSKGIHITKRDMFYTDVKLFKDQKESDVVLDDVACMLGCTRSCLNVVASEKGLVVGRVQFEEDGDYIDCTRMGVGGKAIPPYIDKIAKIQSDAKFILLVEKEAAYMRLAEDRFYNKYPCIVITAKGQPDVATRLFLKKLKMELHIPVLGLVDSDPYGLKILSVYMTGSKNMSYDSASLTTSDIKWLGVRPSDLDKYNIPAQCRLDMTEHDMRTGRQLLQEEFIQKNPEWVKELELMLKMKKKAEIQALSAFGFQYITEDYLPRKLEKGDWI 587
            +L++LG+    REV D A   VL EIEQ++LQ+A  IL G GF Y +P RS  NQLY+ ELDRIVL    + R F +    RK AITTRILQLVHE+ +K IH+TKRD+FYTDVKLF+DQ  SD VLDDVAC+LGCTRS LNV+ASEKG+VVGR+ F EDGD IDC+RMGVGGKAIPP +DK+  IQSDAKFILLVEK+AA+MRLAEDRFYN YPCI+ITAKGQPDVATRLFL+KLK++L IPVL LVD+DPYGLKIL+VYM GS NMSYDS++LTT DIKWLGVRPSDLD+++IP QCRL MTE D++TGR+LL+E+F++ NP+WV+EL+LM   K KAEIQALS+FGFQY+T  YLP KL++GDWI
Sbjct:  540 TLSDLGLPHACREVVDKAEVSVLSEIEQSILQIAVSILEGAGFQYAIPNRSKGNQLYVPELDRIVLKSSTSQRAFASTATCRKAAITTRILQLVHELCTKRIHVTKRDLFYTDVKLFEDQGHSDAVLDDVACLLGCTRSSLNVIASEKGVVVGRLTFREDGDVIDCSRMGVGGKAIPPNVDKVTAIQSDAKFILLVEKDAAFMRLAEDRFYNTYPCIIITAKGQPDVATRLFLRKLKLDLKIPVLALVDADPYGLKILAVYMKGSMNMSYDSSNLTTPDIKWLGVRPSDLDRFSIPEQCRLPMTEEDIKTGRKLLEEDFVKANPDWVRELQLMQTSKVKAEIQALSSFGFQYLTHQYLPLKLQEGDWI 907          
BLAST of NO10G02420 vs. NCBI_GenBank
Match: KMZ61007.1 (Type II DNA topoisomerase VI subunit A 2 [Zostera marina])

HSP 1 Score: 528.5 bits (1360), Expect = 2.700e-146
Identity = 251/368 (68.21%), Postives = 315/368 (85.60%), Query Frame = 0
Query:  220 SLAELGI-TTVREVSDMAPEGVLWEIEQTVLQVAGMILRGEGFSYQVPTRSATNQLYIAELDRIVLSDKVATRTFLNPREVRKTAITTRILQLVHEVLSKGIHITKRDMFYTDVKLFKDQKESDVVLDDVACMLGCTRSCLNVVASEKGLVVGRVQFEEDGDYIDCTRMGVGGKAIPPYIDKIAKIQSDAKFILLVEKEAAYMRLAEDRFYNKYPCIVITAKGQPDVATRLFLKKLKMELHIPVLGLVDSDPYGLKILSVYMTGSKNMSYDSASLTTSDIKWLGVRPSDLDKYNIPAQCRLDMTEHDMRTGRQLLQEEFIQKNPEWVKELELMLKMKKKAEIQALSAFGFQYITEDYLPRKLEKGDWI 587
            +L +L + +T REVSD+ PE V   IE T+L  A  IL GEGFS+ VP+RSATNQ+Y+ ELDRIVL DK + R+F +   VRKTA+TT++L L+H++  K IH+TKRD+FYTDVKLF+DQ +SD VLDDV+CMLGCTRS LNVVASEKG+V+GR+ F +DGD IDCT+MGVGGKAIPP ID++A ++SDA FILLVEK+AA+MRLAEDRFYN++PC+++TAKGQPDVATRLF+KK+K EL +PVL LVDSDPYGLKILSVYM GSKNMSYDS++LTT DIKWLG+RPSDLDKY IP QCRL MTE D++TG+ LL+E+FI++N  WV+ELE+M+K K+KAEIQALS+FGFQY++E YLP K+++ DW+
Sbjct:   64 TLTDLNLASTCREVSDVDPESVKESIECTILAAAKSILAGEGFSFSVPSRSATNQMYVPELDRIVLRDKSSLRSFSSLSTVRKTAVTTKVLSLIHQLCMKNIHVTKRDLFYTDVKLFQDQNQSDSVLDDVSCMLGCTRSSLNVVASEKGVVIGRIVFTDDGDRIDCTKMGVGGKAIPPNIDRVANMESDALFILLVEKDAAFMRLAEDRFYNRFPCVIVTAKGQPDVATRLFMKKMKTELKLPVLALVDSDPYGLKILSVYMCGSKNMSYDSSNLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDIKTGKDLLEEDFIKRNAGWVEELEIMVKTKQKAEIQALSSFGFQYLSEVYLPLKIQQQDWL 431          
BLAST of NO10G02420 vs. NCBI_GenBank
Match: KOO53533.1 (DNA topoisomerase 6 subunit a-like protein [Chrysochromulina sp. CCMP291])

HSP 1 Score: 527.7 bits (1358), Expect = 4.600e-146
Identity = 259/391 (66.24%), Postives = 316/391 (80.82%), Query Frame = 0
Query:  197 VDKVLEEVRLLMLRSRRYDAPNPSLAELGITTV-REVSDMAPEGVLWEIEQTVLQVAGMILRGEGFSYQVPTRSATNQLYIAELDRIVLSDKVATRTFLNPREVRKTAITTRILQLVHEVLSKGIHITKRDMFYTDVKLFKDQKESDVVLDDVACMLGCTRSCLNVVASEKGLVVGRVQFEEDGDYIDCTRMGVGGKAIPPYIDKIAKIQSDAKFILLVEKEAAYMRLAEDRFYNKYPCIVITAKGQPDVATRLFLKKLKMELHIPVLGLVDSDPYGLKILSVYMTGSKNMSYDSASLTTSDIKWLGVRPSDLDKYNIPAQCRLDMTEHDMRTGRQLLQEEFIQKNPEWVKELELMLKMKKKAEIQALSAFGFQYITEDYLPRKLEKGDWI 587
            VD VL+ V+ L        A   +LA++G++ V +EV  M    V   IE+  +  A  I+RGEGFSY +P R+A+N LY+ ELDR+VL DK+  R F N    RKTAITTR+LQLV E+  +GIH+TKRD+FYTDVKLFK Q ESD VLDD ACM+GCTRS LNVVASEKG+VVGR+ FE+DGD IDCT+MGVGGKAIPP ID++  I+ DA+FILL+EK+AA+MRLAEDRFYN YPC+++T KGQPDVATRLFL K++  L+IPVLGL D+DPYGLKILSVYM GSKNMSYD+ +LTT DIKWLGVRPSDLDKY IP QCRL+MTEHD++ G+QLL EEFI+ NPEW KELELM++ K KAEIQALS+FGFQY++++YLPRKL++GDWI
Sbjct:   20 VDAVLKNVKKLRTTMGDQAAGKQTLADVGVSGVTKEVIAMDRHLVTRAIERIAMDAALTIMRGEGFSYTMPVRTASNMLYVPELDRLVLKDKMLERVFANASAARKTAITTRVLQLVLELCGRGIHVTKRDLFYTDVKLFKQQTESDDVLDDAACMIGCTRSSLNVVASEKGIVVGRIIFEDDGDTIDCTKMGVGGKAIPPSIDRVTSIRGDAQFILLIEKDAAFMRLAEDRFYNTYPCVIMTGKGQPDVATRLFLNKVRATLNIPVLGLFDADPYGLKILSVYMKGSKNMSYDAINLTTPDIKWLGVRPSDLDKYQIPKQCRLEMTEHDIKEGKQLLTEEFIKSNPEWHKELELMVRSKVKAEIQALSSFGFQYLSKEYLPRKLKEGDWI 410          
BLAST of NO10G02420 vs. NCBI_GenBank
Match: PIA38748.1 (hypothetical protein AQUCO_02700152v1 [Aquilegia coerulea])

HSP 1 Score: 527.3 bits (1357), Expect = 6.000e-146
Identity = 253/360 (70.28%), Postives = 306/360 (85.00%), Query Frame = 0
Query:  227 TTVREVSDMAPEGVLWEIEQTVLQVAGMILRGEGFSYQVPTRSATNQLYIAELDRIVLSDKVATRTFLNPREVRKTAITTRILQLVHEVLSKGIHITKRDMFYTDVKLFKDQKESDVVLDDVACMLGCTRSCLNVVASEKGLVVGRVQFEEDGDYIDCTRMGVGGKAIPPYIDKIAKIQSDAKFILLVEKEAAYMRLAEDRFYNKYPCIVITAKGQPDVATRLFLKKLKMELHIPVLGLVDSDPYGLKILSVYMTGSKNMSYDSASLTTSDIKWLGVRPSDLDKYNIPAQCRLDMTEHDMRTGRQLLQEEFIQKNPEWVKELELMLKMKKKAEIQALSAFGFQYITEDYLPRKLEKGDWI 587
            +T REV+D+    V  EIEQ V ++   IL G GFS  VPTR   NQLY+ ELDRIVL DKV+TR + N   VRKTAITTRILQLVH++ +KGIH+TKRD+FYTDVKLF+DQ +SDVVLDD++CMLGCTRS LNV+ASEKG+VVGR+ F ++GD IDCT+MG+GGKAIPP ID++  +QSDA FILLVEK+AAYMRLAEDRFYN++PCI+ITAKGQPDVATRLFL+K+K+EL +PVL LVDSDPYGLKILSVY  GSKNMSYDS +LTT DIKWLGVRPSDLDKY IP QCRL MTE D++TG+ +L+E+F++KNP WV+EL LM++ K+KAEIQALS FGFQY++E YLP KL++ DW+
Sbjct:   70 STCREVTDLDLTSVQKEIEQIVFRITRSILSGSGFSLDVPTRGNANQLYVPELDRIVLKDKVSTRQYANVSTVRKTAITTRILQLVHQLCTKGIHVTKRDLFYTDVKLFQDQGQSDVVLDDISCMLGCTRSSLNVIASEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQSDALFILLVEKDAAYMRLAEDRFYNRFPCIIITAKGQPDVATRLFLRKMKLELKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSGNLTTPDIKWLGVRPSDLDKYKIPEQCRLPMTEQDIKTGKDMLEEDFVKKNPGWVEELSLMVRTKQKAEIQALSTFGFQYLSEVYLPLKLQQQDWL 429          
BLAST of NO10G02420 vs. NCBI_GenBank
Match: XP_002987030.1 (DNA topoisomerase 6 subunit A [Selaginella moellendorffii] >EFJ11873.1 hypothetical protein SELMODRAFT_125304 [Selaginella moellendorffii])

HSP 1 Score: 526.6 bits (1355), Expect = 1.000e-145
Identity = 257/368 (69.84%), Postives = 315/368 (85.60%), Query Frame = 0
Query:  220 SLAELGI-TTVREVSDMAPEGVLWEIEQTVLQVAGMILRGEGFSYQVPTRSATNQLYIAELDRIVLSDKVATRTFLNPREVRKTAITTRILQLVHEVLSKGIHITKRDMFYTDVKLFKDQKESDVVLDDVACMLGCTRSCLNVVASEKGLVVGRVQFEEDGDYIDCTRMGVGGKAIPPYIDKIAKIQSDAKFILLVEKEAAYMRLAEDRFYNKYPCIVITAKGQPDVATRLFLKKLKMELHIPVLGLVDSDPYGLKILSVYMTGSKNMSYDSASLTTSDIKWLGVRPSDLDKYNIPAQCRLDMTEHDMRTGRQLLQEEFIQKNPEWVKELELMLKMKKKAEIQALSAFGFQYITEDYLPRKLEKGDWI 587
            SL++L +  + REV+++    V  EIE+ VL V   IL+G+G +Y VP+R++ NQLY+ ELDRIVL DK + R F +   V+KTAITTRIL+LVH++ SK IH+TKRD+FYTDVKLF +Q +SD VLDDV+CMLGCTR+ LNVVASEKG+VVGR+ F EDGD IDCT+MGVGGKAIPP IDKI  ++SDA FILLVEK+AA+MRLAEDRFYN++PC+++TAKGQPDVATRLFL+K+KMEL +PVLGLVDSDPYGLKILSVYM+GSKNMSYDSASLTT DIKWLGVRPSDLDKY IP QCRL M+E D++TGR LL+E+FI+K+P W +ELELM+K K+KAEIQALS+FGFQY++E YLP KL++ DWI
Sbjct:   48 SLSDLALEESCREVAELGSGEVKEEIEKLVLSVTKSILQGQGLAYTVPSRTSANQLYVEELDRIVLKDKTSIRPFASSSTVKKTAITTRILELVHQLCSKQIHVTKRDLFYTDVKLFTEQAQSDTVLDDVSCMLGCTRTSLNVVASEKGVVVGRLVFVEDGDRIDCTKMGVGGKAIPPNIDKIQDMESDALFILLVEKDAAFMRLAEDRFYNRFPCVIVTAKGQPDVATRLFLRKMKMELRLPVLGLVDSDPYGLKILSVYMSGSKNMSYDSASLTTPDIKWLGVRPSDLDKYRIPQQCRLPMSELDVKTGRDLLEEDFIKKDPRWYQELELMVKNKEKAEIQALSSFGFQYLSEVYLPMKLQERDWI 415          
The following BLAST results are available for this feature:
BLAST of NO10G02420 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_004363895.21.900e-14765.91topoisomerase [Capsaspora owczarzaki ATCC 30864] >... [more]
XP_009602544.11.900e-14765.98PREDICTED: DNA topoisomerase 6 subunit A [Nicotian... [more]
XP_002294481.19.200e-14773.49topoisomerase [Thalassiosira pseudonana CCMP1335] ... [more]
XP_002947507.11.200e-14667.44hypothetical protein VOLCADRAFT_103453 [Volvox car... [more]
XP_005846746.12.700e-14666.17hypothetical protein CHLNCDRAFT_31596 [Chlorella v... [more]
XP_011400762.12.700e-14669.84DNA topoisomerase 6 subunit A [Auxenochlorella pro... [more]
KMZ61007.12.700e-14668.21Type II DNA topoisomerase VI subunit A 2 [Zostera ... [more]
KOO53533.14.600e-14666.24DNA topoisomerase 6 subunit a-like protein [Chryso... [more]
PIA38748.16.000e-14670.28hypothetical protein AQUCO_02700152v1 [Aquilegia c... [more]
XP_002987030.11.000e-14569.84DNA topoisomerase 6 subunit A [Selaginella moellen... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001110NSK001110Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G02420.1NO10G02420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585993gene_3971Nannochloropsis oceanica (N. oceanica CCMP1779)gene
TOP6Agene5044Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G02420.1NO10G02420.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G02420 ID=NO10G02420|Name=NO10G02420|organism=Nannochloropsis oceanica|type=gene|length=2149bp
ACAGAATCTGCATCTTCGTCTATCCTGCTAGCCGAGCAATTGAAGCCATG
CTGCGCCGCCGTGTTCAAGATGACATCAGCAGCTCCGAAGAAGAAGAGGA
GGAGGAGGAGGTTGACGAGAAGGAGGAGGATGATGTCGATGTAGACGAGA
AGGAGGACGACAGTGATTTTGAGCCAGTCAGCGATGGAAGGGGTAAGTTC
AAGGCCAATAGTAAGCCCAAAGCCAAGGCAATCCCGAAGAGGCCTTCAAC
GGCCAGCGCGCGGTCGAAGAAGAATTTGAGTGCCGCAGCCTCCGCAGCGA
CCAAAAAGAAGAGCGCGGGCGGCGGTGGTGGAGGAGGATTGGGAGGAAGA
GGAGAAGGCGGAGGAGGCACAAAATCAACTGGAGGCAAGAAGGCTGGTGC
TGCTGCGGTGGCGGGGCGCAAGCGACGCAAGGTAGATAATGACAACGACG
ACGATGAGGAGGAGGAAGAGGAGGAAGAGGAGGAAGAAGAAGAGGAAGAG
GACGAGGAGAACAGCGAGGAGGAAAGGGAAGGAGGCGGCAGAGGCCATCG
CAGGAGCTGGGGCAAGGGGAAAACCGCTGCAAAAGAGAAAGGGAAAGGGA
AAGCCAAGTCCCTGACGAGCGTGGGCAGTAGCAAGGTGGACAAGGTCCTG
GAGGAGGTGCGGCTGCTGATGCTCCGTTCCCGGCGTTATGACGCGCCTAA
CCCTTCCCTGGCTGAATTGGGAATAACGACTGTGCGAGAGGTATCGGACA
TGGCGCCGGAGGGTGTGTTGTGGGAGATTGAGCAGACGGTATTGCAGGTG
GCAGGGATGATTTTGAGGGGAGAGGGCTTTAGCTATCAGGTCCCCACGAG
GTCGGCGACGAATCAGTTGTACATAGCGGAATTGGATCGGATTGTGTTGA
GTGACAAGGTGGCGACGCGAACATTTCTCAATCCGAGGGAGGTGAGGAAG
ACAGCGATTACCACGCGAATCTTGCAGTTGGTGCATGAGGTTTTGAGTAA
GGGGATTCATATCACGAAGCGCGATATGTTTTATACGGACGTGAAGCTGT
TTAAAGACCAGAAGGAGAGTGATGTGGTGCTTGATGATGTTGCTTGTATG
CTGGGCTGCACCCGGTCGTGTTTGAATGTGGTGGCGTCAGAGAAAGGGTT
GGTGGTTGGGCGAGTGCAGTTTGAGGAGGACGGCGATTATATCGATTGTA
CGAGGATGGGGGTGGGGGGAAAGGCCATCCCGCCTTACATTGACAAGATT
GCTAAGATACAGAGTGACGCCAAGTTCATCCTTTTGGTGGAAAAAGAGGC
CGCGTACATGCGCCTGGCGGAGGACAGATTCTATAACAAGTACCCATGTA
TCGTAATCACGGCCAAGGGACAGCCGGACGTGGCCACGCGCTTGTTTCTC
AAGAAGCTAAAGATGGAGTTGCACATCCCGGTCTTGGGGCTCGTGGATTC
CGACCCTTACGGCCTCAAAATCCTAAGCGTGTACATGACCGGCTCGAAAA
ATATGAGCTACGATTCCGCGTCGCTCACCACCTCGGACATCAAGTGGTTA
GGGGTCCGGCCGTCAGACCTGGATAAATATAACATTCCCGCACAATGCCG
ACTAGATATGACGGAGCACGACATGCGGACGGGCCGGCAGCTGCTGCAGG
AAGAATTCATCCAGAAGAACCCGGAGTGGGTGAAGGAATTGGAACTTATG
CTCAAGATGAAGAAAAAGGCGGAGATCCAGGCACTGTCGGCGTTTGGCTT
TCAGTACATTACCGAGGACTATTTGCCGCGCAAGCTCGAAAAGGGCGATT
GGATTTAAGGCCTTGCTTCCCGCCCTCCTCCCCCTCGCCTTTACTGATGT
GTGTATATTTCTCTGACAGGACAGAGATGACGGAGCCGAGACGCGACCAA
GTGGGGGACAAACAGATAAAGAAGTGGAAACATGAATGAGAAGGAGAAAG
GCTGGCTGAGCATGACACGGATATGCTGAAAAACAAAAGATATACATATG
AAAACAAAGGATGAAACAGCGTGATTGACCAAGGAAAAAAAATTTGGCAA
GCAAGGTTATACCACAATGATAACAGACGATGTCTTAAGGGGAAGCAGCA
TTAAAAAAAAGAACTGAAAAGAAAACCCGGGCATAAAGCTCTGTCAGTC
back to top

protein sequence of NO10G02420.1

>NO10G02420.1-protein ID=NO10G02420.1-protein|Name=NO10G02420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=587bp
MLRRRVQDDISSSEEEEEEEEVDEKEEDDVDVDEKEDDSDFEPVSDGRGK
FKANSKPKAKAIPKRPSTASARSKKNLSAAASAATKKKSAGGGGGGGLGG
RGEGGGGTKSTGGKKAGAAAVAGRKRRKVDNDNDDDEEEEEEEEEEEEEE
EDEENSEEEREGGGRGHRRSWGKGKTAAKEKGKGKAKSLTSVGSSKVDKV
LEEVRLLMLRSRRYDAPNPSLAELGITTVREVSDMAPEGVLWEIEQTVLQ
VAGMILRGEGFSYQVPTRSATNQLYIAELDRIVLSDKVATRTFLNPREVR
KTAITTRILQLVHEVLSKGIHITKRDMFYTDVKLFKDQKESDVVLDDVAC
MLGCTRSCLNVVASEKGLVVGRVQFEEDGDYIDCTRMGVGGKAIPPYIDK
IAKIQSDAKFILLVEKEAAYMRLAEDRFYNKYPCIVITAKGQPDVATRLF
LKKLKMELHIPVLGLVDSDPYGLKILSVYMTGSKNMSYDSASLTTSDIKW
LGVRPSDLDKYNIPAQCRLDMTEHDMRTGRQLLQEEFIQKNPEWVKELEL
MLKMKKKAEIQALSAFGFQYITEDYLPRKLEKGDWI*
back to top
Synonyms
Publications