NO10G01950, NO10G01950 (gene) Nannochloropsis oceanica

Overview
NameNO10G01950
Unique NameNO10G01950
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1086
Alignment locationchr10:542937..544022 +

Link to JBrowse

Properties
Property NameValue
Description30s ribosomal protein s6
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:542937..544022 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0019843rRNA binding
GO:0005198structural molecule activity
GO:0003723RNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR035980Ribosomal_S6_sf
IPR000529Ribosomal_S6
Homology
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BLAST of NO10G01950 vs. NCBI_GenBank
Match: EWM25397.1 (30s ribosomal protein s6 [Nannochloropsis gaditana])

HSP 1 Score: 196.4 bits (498), Expect = 5.600e-47
Identity = 96/114 (84.21%), Postives = 105/114 (92.11%), Query Frame = 0 
Query:   23 TSGGAMRGVENHGIRALSHRLRNRRAMEEEQKYHWQARYISSYFDASPKAVKEVERVLRLDENVLRFFTLRPKTQADLIRIRSGFRAAIWAEERTVETVAEKAREQKQKLFHEE 137
            ++GGAMRG ENHG+RALSHRLRNRRAMEEEQKYHW+ARYISSYFD SP  VKEVERVLRLDENVLRFFTLRPKTQADLIR R+GFRAA+W EER+VE  AE ARE+K+KLFHEE
Sbjct:  135 SNGGAMRGFENHGLRALSHRLRNRRAMEEEQKYHWRARYISSYFDVSPDTVKEVERVLRLDENVLRFFTLRPKTQADLIRTRTGFRAALWTEERSVEKTAENAREEKRKLFHEE 248
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BLAST of NO10G01950 vs. NCBI_GenBank
Match: XP_002183089.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC45307.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 72.0 bits (175), Expect = 1.600e-9
Identity = 33/79 (41.77%), Postives = 53/79 (67.09%), Query Frame = 0 
Query:   25 GGAMRGVENHGIRALSHRLRNRRAMEEEQKYHWQARYISSYFDASPKAVKEVERVLRLDENVLRFFTLRPKTQADLIRI 104
            GG +RG+ NHGIR L HR + R A  +  +Y+ + R+IS Y+D++P  +++VE+ L +DENVLR   L+ ++  D + I
Sbjct:   20 GGIVRGIHNHGIRDLPHRFQARYADSQGNRYYQKGRFISIYYDSNPTTMRQVEQTLSMDENVLRNTHLKARSVLDYVNI 98
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BLAST of NO10G01950 vs. NCBI_GenBank
Match: GAX14178.1 (hypothetical protein FisN_20Hh201 [Fistulifera solaris])

HSP 1 Score: 69.7 bits (169), Expect = 7.900e-9
Identity = 37/100 (37.00%), Postives = 55/100 (55.00%), Query Frame = 0 
Query:   25 GGAMRGVENHGIRALSHRLRNRRAMEEEQKYHWQARYISSYFDASPKAVKEVERVLRLDENVLRFFTLRPKTQADLIRIRSGFRAAIWAEERTVETVAEK 125
            GG +R V NHGIR L HR +      E  +Y+ + R+ S Y+DA+P  + +V+ +L++DE VLR   LR ++  D I +R      I    R  E  A+K
Sbjct:   34 GGIVRAVHNHGIRTLPHRFKATYPDREGNRYYSKGRFFSIYYDANPDTMSQVDTILKMDEEVLRSTHLRARSTLDFINLREDRNPYIQQVLREEEKAADK 133
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BLAST of NO10G01950 vs. NCBI_GenBank
Match: GAX28894.1 (hypothetical protein FisN_20Lh201 [Fistulifera solaris])

HSP 1 Score: 67.8 bits (164), Expect = 3.000e-8
Identity = 39/106 (36.79%), Postives = 59/106 (55.66%), Query Frame = 0 
Query:   25 GGAMRGVENHGIRALSHRLRNRRAMEEEQKYHWQARYISSYFDASPKAVKEVERVLRLDENVLRFFTLRPKTQADLIRIRSGFRAAIWAEERTVETVAEK-AREQK 130
            GG +R V NHGIR L HR +      E  +Y+ + R+ S Y+DA+P  + +V+ +L++DE VLR   LR ++  D I +R      I    R  +  A+K + EQK
Sbjct:   34 GGIVRAVHNHGIRTLPHRFKATYPDREGNRYYSKGRFFSIYYDANPDTMSQVDTILKMDEEVLRSTHLRARSTLDFINLREDRNPYIQQVLREEKQEADKGSAEQK 139
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BLAST of NO10G01950 vs. NCBI_GenBank
Match: EJK75146.1 (hypothetical protein THAOC_03141, partial [Thalassiosira oceanica])

HSP 1 Score: 65.5 bits (158), Expect = 1.500e-7
Identity = 34/95 (35.79%), Postives = 58/95 (61.05%), Query Frame = 0 
Query:   24 SGGAMRGVENHGIRALSHRLRNRRAMEEEQKYHWQARYISSYFDASPKAVKEVERVLRLDENVLRFFTLRPKTQ----ADLIRIRSGFRAAIWAE 115
            +GG +R ++NHGIR L HR +++ A  E  +Y+ + R+IS ++D++P   K+VE +L L+E +LR   LR   +     DL+  R+ +   I +E
Sbjct:   71 NGGIVRSIQNHGIRQLPHRFKSKYADREGNRYYEKGRFISVFYDSNPVTAKQVETILNLNEEILRNTHLRASNRFNEVNDLLESRNPYIQDILSE 165
The following BLAST results are available for this feature:
BLAST of NO10G01950 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 5
Match NameE-valueIdentityDescription
EWM25397.15.600e-4784.2130s ribosomal protein s6 [Nannochloropsis gaditana... [more]
XP_002183089.11.600e-941.77predicted protein [Phaeodactylum tricornutum CCAP ... [more]
GAX14178.17.900e-937.00hypothetical protein FisN_20Hh201 [Fistulifera sol... [more]
GAX28894.13.000e-836.79hypothetical protein FisN_20Lh201 [Fistulifera sol... [more]
EJK75146.11.500e-735.79hypothetical protein THAOC_03141, partial [Thalass... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL054nonsL054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR012ngnoR012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001064NSK001064Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G01950.1NO10G01950.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO10G01950.2NO10G01950.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586166gene_4018Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100005g59gene5090Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G01950.1NO10G01950.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO10G01950.2NO10G01950.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G01950 ID=NO10G01950|Name=NO10G01950|organism=Nannochloropsis oceanica|type=gene|length=1086bp
ACGACAGGGTTGGTTAAGAAGTGCTGGGACAGAGCCTCCTGGCCGCTCGC
ATCATCATCGGATCATCATCCTCCCCCAAGCCAGAAGCGAAGCCACAATC
CGCAGGTTTCAAGCTTATTGGAAATTATGCCTCTTTACCAACAGgtaagc
atgttcacacagaagttttcatgtaagcgctggtggtccctcattttggt
ccttccctcaacgatgaatgtctcacatccccccccccttcctctctccc
ccccctcccaacttttcttttgggaaacttcagCTCATTATTGCGCGCGA
TATTGCTAAGGCACCAGAGCTAACCAATCTATTAAAGCAATGTGCGACTA
CAATTCTCGGCAGTGgtaaggtcttgaggggttctttggagaatggccat
gcgttatgacgagagtggcattgaggaaagcggtagacggacaactcatc
atctcaactttctctcgcacaacttcagGTGGCGCCATGCGCGGAGTAGA
AAATCACGGTATCAGGGCCCTCAGTCATCGGCTACGAAAgtatgtgtgct
gggaagggaatgtagtgatgcctatattgtatgtgagcattgatgtctcg
cattgaacttcccccttaaaaaatactagcgcctgccctcttctcgcccc
accggaaaatcacgcatgttccactctcgatcccctcttacacagCCGCC
GAGCCATGGAAGAAGAGCAGAAATACCACTGGCAAGCCCGCTATATCTCG
TCCTACTTTGACGCGAGCCCCAAGGCGGTCAAGGAGGTGGAGCGGGTGCT
GCGGCTGGACGAGAACGTGTTGCGCTTCTTCACGCTGAGGCCAAAGACTC
AAGCCGACCTCATCCGGATACGCAGCGGATTTCGGGCAGCGATTTGGGCA
GAGGAGCGCACGGTTGAGACGGTGGCGGAGAAAGCCCGGGAGCAAAAGCA
AAAGCTTTTTCATGAGGAGTAAAAGTGGGGTGAATGAAGGGAGGGGAGGT
CGAAGCGGTGTGGACAAGTCTGCTCGAAAAATAAGCTTTAAAAAATGAAA
TCGATGCATGACAACATGATGCTTGAGAAATCTGTG
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protein sequence of NO10G01950.1

>NO10G01950.1-protein ID=NO10G01950.1-protein|Name=NO10G01950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=146bp
MPLYQQLIIARDIAKAPELTNLLKQCATTILGSGGAMRGVENHGIRALSH
RLRNRRAMEEEQKYHWQARYISSYFDASPKAVKEVERVLRLDENVLRFFT
LRPKTQADLIRIRSGFRAAIWAEERTVETVAEKAREQKQKLFHEE*
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protein sequence of NO10G01950.2

>NO10G01950.2-protein ID=NO10G01950.2-protein|Name=NO10G01950.2|organism=Nannochloropsis oceanica|type=polypeptide|length=137bp
MTRVALRKAVDGQLIISTFSRTTSGGAMRGVENHGIRALSHRLRNRRAME
EEQKYHWQARYISSYFDASPKAVKEVERVLRLDENVLRFFTLRPKTQADL
IRIRSGFRAAIWAEERTVETVAEKAREQKQKLFHEE*
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Synonyms
Publications