NO10G01950.2, NO10G01950.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G01950.2
Unique NameNO10G01950.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length791
Alignment locationchr10:542937..544022 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:542937..544022 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G01950.2 vs.
Match: EWM25397.1 (30s ribosomal protein s6 [Nannochloropsis gaditana])

HSP 1 Score: 196.4 bits (498), Expect = 5.600e-47
Identity = 96/114 (84.21%), Postives = 105/114 (92.11%), Query Frame = 0 
Query:   23 TSGGAMRGVENHGIRALSHRLRNRRAMEEEQKYHWQARYISSYFDASPKAVKEVERVLRLDENVLRFFTLRPKTQADLIRIRSGFRAAIWAEERTVETVAEKAREQKQKLFHEE 137
            ++GGAMRG ENHG+RALSHRLRNRRAMEEEQKYHW+ARYISSYFD SP  VKEVERVLRLDENVLRFFTLRPKTQADLIR R+GFRAA+W EER+VE  AE ARE+K+KLFHEE
Sbjct:  135 SNGGAMRGFENHGLRALSHRLRNRRAMEEEQKYHWRARYISSYFDVSPDTVKEVERVLRLDENVLRFFTLRPKTQADLIRTRTGFRAALWTEERSVEKTAENAREEKRKLFHEE 248
The following BLAST results are available for this feature:
BLAST of NO10G01950.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25397.15.600e-4784.2130s ribosomal protein s6 [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G01950NO10G01950Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G01950.2NO10G01950.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G01950.2.cds1NO10G01950.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G01950.2.cds2NO10G01950.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G01950.2 ID=NO10G01950.2|Name=NO10G01950.2|organism=Nannochloropsis oceanica|type=mRNA|length=791bp
ACGACAGGGTTGGTTAAGAAGTGCTGGGACAGAGCCTCCTGGCCGCTCGC
ATCATCATCGGATCATCATCCTCCCCCAAGCCAGAAGCGAAGCCACAATC
CGCAGGTTTCAAGCTTATTGGAAATTATGCCTCTTTACCAACAGCTCATT
ATTGCGCGCGATATTGCTAAGGCACCAGAGCTAACCAATCTATTAAAGCA
ATGTGCGACTACAATTCTCGGCAGTGGTAAGGTCTTGAGGGGTTCTTTGG
AGAATGGCCATGCGTTATGACGAGAGTGGCATTGAGGAAAGCGGTAGACG
GACAACTCATCATCTCAACTTTCTCTCGCACAACTTCAGGTGGCGCCATG
CGCGGAGTAGAAAATCACGGTATCAGGGCCCTCAGTCATCGGCTACGAAA
CCGCCGAGCCATGGAAGAAGAGCAGAAATACCACTGGCAAGCCCGCTATA
TCTCGTCCTACTTTGACGCGAGCCCCAAGGCGGTCAAGGAGGTGGAGCGG
GTGCTGCGGCTGGACGAGAACGTGTTGCGCTTCTTCACGCTGAGGCCAAA
GACTCAAGCCGACCTCATCCGGATACGCAGCGGATTTCGGGCAGCGATTT
GGGCAGAGGAGCGCACGGTTGAGACGGTGGCGGAGAAAGCCCGGGAGCAA
AAGCAAAAGCTTTTTCATGAGGAGTAAAAGTGGGGTGAATGAAGGGAGGG
GAGGTCGAAGCGGTGTGGACAAGTCTGCTCGAAAAATAAGCTTTAAAAAA
TGAAATCGATGCATGACAACATGATGCTTGAGAAATCTGTG
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protein sequence of NO10G01950.2

>NO10G01950.2-protein ID=NO10G01950.2-protein|Name=NO10G01950.2|organism=Nannochloropsis oceanica|type=polypeptide|length=137bp
MTRVALRKAVDGQLIISTFSRTTSGGAMRGVENHGIRALSHRLRNRRAME
EEQKYHWQARYISSYFDASPKAVKEVERVLRLDENVLRFFTLRPKTQADL
IRIRSGFRAAIWAEERTVETVAEKAREQKQKLFHEE*
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mRNA from alignment at chr10:542937..544022+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G01950.2 ID=NO10G01950.2|Name=NO10G01950.2|organism=Nannochloropsis oceanica|type=mRNA|length=1086bp|location=Sequence derived from alignment at chr10:542937..544022+ (Nannochloropsis oceanica)
ACGACAGGGTTGGTTAAGAAGTGCTGGGACAGAGCCTCCTGGCCGCTCGC
ATCATCATCGGATCATCATCCTCCCCCAAGCCAGAAGCGAAGCCACAATC
CGCAGGTTTCAAGCTTATTGGAAATTATGCCTCTTTACCAACAGGTAAGC
ATGTTCACACAGAAGTTTTCATGTAAGCGCTGGTGGTCCCTCATTTTGGT
CCTTCCCTCAACGATGAATGTCTCACATCCCCCCCCCCTTCCTCTCTCCC
CCCCCTCCCAACTTTTCTTTTGGGAAACTTCAGCTCATTATTGCGCGCGA
TATTGCTAAGGCACCAGAGCTAACCAATCTATTAAAGCAATGTGCGACTA
CAATTCTCGGCAGTGGTAAGGTCTTGAGGGGTTCTTTGGAGAATGGCCAT
GCGTTATGACGAGAGTGGCATTGAGGAAAGCGGTAGACGGACAACTCATC
ATCTCAACTTTCTCTCGCACAACTTCAGGTGGCGCCATGCGCGGAGTAGA
AAATCACGGTATCAGGGCCCTCAGTCATCGGCTACGAAAGTATGTGTGCT
GGGAAGGGAATGTAGTGATGCCTATATTGTATGTGAGCATTGATGTCTCG
CATTGAACTTCCCCCTTAAAAAATACTAGCGCCTGCCCTCTTCTCGCCCC
ACCGGAAAATCACGCATGTTCCACTCTCGATCCCCTCTTACACAGCCGCC
GAGCCATGGAAGAAGAGCAGAAATACCACTGGCAAGCCCGCTATATCTCG
TCCTACTTTGACGCGAGCCCCAAGGCGGTCAAGGAGGTGGAGCGGGTGCT
GCGGCTGGACGAGAACGTGTTGCGCTTCTTCACGCTGAGGCCAAAGACTC
AAGCCGACCTCATCCGGATACGCAGCGGATTTCGGGCAGCGATTTGGGCA
GAGGAGCGCACGGTTGAGACGGTGGCGGAGAAAGCCCGGGAGCAAAAGCA
AAAGCTTTTTCATGAGGAGTAAAAGTGGGGTGAATGAAGGGAGGGGAGGT
CGAAGCGGTGTGGACAAGTCTGCTCGAAAAATAAGCTTTAAAAAATGAAA
TCGATGCATGACAACATGATGCTTGAGAAATCTGTG
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Coding sequence (CDS) from alignment at chr10:542937..544022+

>NO10G01950.2 ID=NO10G01950.2|Name=NO10G01950.2|organism=Nannochloropsis oceanica|type=CDS|length=411bp|location=Sequence derived from alignment at chr10:542937..544022+ (Nannochloropsis oceanica)
ATGACGAGAGTGGCATTGAGGAAAGCGGTAGACGGACAACTCATCATCTC
AACTTTCTCTCGCACAACTTCAGGTGGCGCCATGCGCGGAGTAGAAAATC
ACGGTATCAGGGCCCTCAGTCATCGGCTACGAAACCGCCGAGCCATGGAA
GAAGAGCAGAAATACCACTGGCAAGCCCGCTATATCTCGTCCTACTTTGA
CGCGAGCCCCAAGGCGGTCAAGGAGGTGGAGCGGGTGCTGCGGCTGGACG
AGAACGTGTTGCGCTTCTTCACGCTGAGGCCAAAGACTCAAGCCGACCTC
ATCCGGATACGCAGCGGATTTCGGGCAGCGATTTGGGCAGAGGAGCGCAC
GGTTGAGACGGTGGCGGAGAAAGCCCGGGAGCAAAAGCAAAAGCTTTTTC
ATGAGGAGTAA
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Synonyms
Publications