NO10G01910, NO10G01910 (gene) Nannochloropsis oceanica

Overview
NameNO10G01910
Unique NameNO10G01910
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2245
Alignment locationchr10:530722..532966 +

Link to JBrowse

Properties
Property NameValue
DescriptionEukaryotic translation initiation factor 3 subunit M
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:530722..532966 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036390WH_DNA-bd_sf
IPR000717PCI_dom
Vocabulary: Biological Process
TermDefinition
GO:0016043cellular component organization
Vocabulary: Molecular Function
TermDefinition
GO:0008135translation factor activity, RNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Homology
BLAST of NO10G01910 vs. NCBI_GenBank
Match: EWM25402.1 (proteasome component domain protein [Nannochloropsis gaditana])

HSP 1 Score: 603.2 bits (1554), Expect = 7.200e-169
Identity = 324/435 (74.48%), Postives = 371/435 (85.29%), Query Frame = 0
Query:   63 ARMPAHTHASMPATTAYASSEPSSLLSIVDRTAYDRLIKSIADDLPQATQQKFREEAKECTDYARARKLIELVLAQSAVIMARPVEKDIEGSYQVLISLLDRLSDPADLPVMVERLVSNLRSSANEKPGLRLKLLSNFYNLLKSGTPERFQVLLAIIEYARDTKQLEVLSDFFANLEDWKKNWRHLSEKNERQLYLLVSDTLASAGKNSEAHHFLIKYISTFSEQDTDLDLSETAALAVKGVIGAVKQPLTAL--SSSLLGLPAVKRLAADPAHKTVHELLQVFSFGKLADFLEYESKYPGVLAAQGVDREKALRDMRLLSVSLLAAEYEEIPYSAVSATLQIPHDEVESWVVQAITAKLLEAKMDQQQEVVMVTRASHRHFSRRDWSRLQEKLHLWRQNVSSLLDSLRDK---RVPAPTHQALHHHHRGSSHSN 493
            +R+P+     MPA +A  SSEPSSLLSIVDRTAYDRLIKSIAD LP++T+ +FR+EAKECTDYARARKLIEL+LAQSAVIMARP EKDIEGSYQVLISLLDRLSDP DLP+MV++++SNLR+S  +KP LRLKLL NFYNLLKSGT ERFQVLL IIEYARDTKQL++LSDFFA+LE+WKKNWRHLS ++ERQLYLLVS+TLA +GK +EA  FLIKY++TF E D  LD   T ALAVKGVIGAV++PL AL  +S LL LPAVKRLA+DPAHK VHELL++F FGKLAD  EYE + PGVL A GV REKA RDMRLLS+SLLAAEYEEIPY AVSATLQ+PH++VESWVV+AITA+LLEAKMDQ+QEVVMVTRASHRHFS ++W RLQEKLH+WRQNVSSLL SLR+K   R  A   Q    + R SSHSN
Sbjct:   19 SRLPS---VEMPADSASVSSEPSSLLSIVDRTAYDRLIKSIADALPESTRSQFRDEAKECTDYARARKLIELILAQSAVIMARPTEKDIEGSYQVLISLLDRLSDPEDLPIMVDKILSNLRASVEDKPSLRLKLLCNFYNLLKSGTSERFQVLLVIIEYARDTKQLDILSDFFADLENWKKNWRHLSAEDERQLYLLVSETLAGSGKVAEAQLFLIKYLATFRETDPGLDTPVTVALAVKGVIGAVREPLNALRSASDLLSLPAVKRLASDPAHKAVHELLEIFCFGKLADLTEYEDRNPGVLEANGVGREKAFRDMRLLSLSLLAAEYEEIPYEAVSATLQVPHEDVESWVVEAITARLLEAKMDQEQEVVMVTRASHRHFSHQNWLRLQEKLHVWRQNVSSLLVSLREKKGARTQASRVQESQQYVR-SSHSN 449          
BLAST of NO10G01910 vs. NCBI_GenBank
Match: CBJ27541.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 265.8 bits (678), Expect = 2.700e-67
Identity = 154/376 (40.96%), Postives = 230/376 (61.17%), Query Frame = 0
Query:   98 RLIKSIADDLPQATQQKFREEAKECTDYARARKLIELVLAQSAVIMARPVEKDIEGSYQVLISLLDRLSDP-ADLPVMVERLVSNLRSSANEKPGLRLKLLSNFYNLLKSGTPERFQVLLAIIEYARDTKQLEVLSDFFANLEDWKKNWRHLSEKNERQLYLLVSDTLASAGKNSEAHHFLIKYISTFSEQDTDLDLSETAALAVKGVIGAVKQPLTALSS--SLLGLPAVKRLAADPAHKTVHELLQVFSFGKLADFLEYESKYPGVLAAQGVDREKALRDMRLLSVSLLAAEYEEIPYSAVSATLQIP-HDEVESWVVQAITAKLLEAKMDQQQEVVMVTRASHRHFSRRDWSRLQEKLHLWRQNVSSLLDSLR 470
            +L++++A  +P   Q +F +        A A  LI  VL Q  VI+      D+EG + +L SLL +  +P A +P +   + + +    +++  LRLKL++N YN+L   T  + +VLL +I YA++ K + +LS FFA ++DW K W  LS  ++R+LYLL+SDTL S GK  E+  FL+KY++T+ +  T  +L+E  A AV+G IGAVK P+ + +   +LLG+ AV +L ADP +  VHELL +FS  KL +++ +  K    LA   +D +  +  MRLLS+  LA E+EEIPY  V+ TLQ+   DEVE WV+QAI   L+EAKMDQ Q VV++ R ++R F    W  LQ KL  W  NV +LL +++
Sbjct:   19 KLVEAVAKAMPSG-QAQFSKACTALITNANAPDLIRKVLEQRNVILEMSKTDDVEGCFGILFSLLFKTDNPKAAVPALSMEIATKVLEKVDDRAPLRLKLVTNLYNMLPVRTAGQLEVLLLVIRYAKEAKLVAMLSSFFAGVDDWIKGW-ELSVADQRRLYLLISDTLGSEGKAVESQKFLMKYLATY-DGATTAELAEVKAAAVRGCIGAVKSPIVSFTEQHNLLGMAAVTQLKADPKYSAVHELLHIFSVEKLGEYMAFHEKNAKTLADNKIDHDSCVSSMRLLSLCSLATEHEEIPYQVVADTLQVSGDDEVEDWVLQAIQTGLMEAKMDQMQRVVVIRRCTNRVFGPAQWKTLQMKLGTWSANVQTLLSAIQ 391          
BLAST of NO10G01910 vs. NCBI_GenBank
Match: XP_006408436.1 (eukaryotic translation initiation factor 3 subunit M [Eutrema salsugineum] >ESQ49889.1 hypothetical protein EUTSA_v10020815mg [Eutrema salsugineum])

HSP 1 Score: 203.4 bits (516), Expect = 1.700e-48
Identity = 136/410 (33.17%), Postives = 230/410 (56.10%), Query Frame = 0
Query:   76 TTAYASSEPSSLLSIVDRTAYDRLIKSIADDLPQATQQKFREEAKECTDYARARKLIE---LVLAQSAVIMARPVEKDIEGSYQVLISLLDRLSDPADLPVMVERLVSNLRSSANEKPGLRLKLLSNFYNLLKSGTPERFQVLLAIIEYARDTKQLEVLSDFFANLEDWKKNWRHLSEKNERQLYLLVSDTL-ASAGKNSEAHHFLIKYISTFSEQDTDLDLSETAALAVKGVIGAVKQPLTALSSSLLGLPAVKRLAADPAHKTVHELLQVFSFGKLADFLEYESKYPGVLAAQGVDREKALRDMRLLS-VSLLAAEYEEIPYSAVSATLQIPHDEVESWVVQAITAKLLEAKMDQQQEVVMVTRASHRHFSRRDWSRLQEKLHLWRQNVSSLLDSLRDKRVPAPTHQA 481
            TT   +SE    L++V  T+      + AD  P+A + +     +E  +   A K +E   L++  + ++ ++  EKD+E +Y ++ SL+   ++  D+  MV+ + S +    N+K  LRLK+L N YNLL      RFQV +  +  A D K +E +   F  ++++ K W ++  K++R+L+L +++ L  +     E+  FL KY++TFS  D  + L E   +AV+ V   VK   +     LL LPAV +L  D  ++ V++LL++F   +L  F+E+++   G L + G+  E  +  MRLLS V L + E  +IPY+ +  TLQ+  +EVE W+V+AITAKL++ KMDQ  +VV+V+R S R F  + W  L+ KL  WR N+++++ ++   +V     QA
Sbjct:    2 TTIVPTSEEDPFLAVVRSTSQ----LAWADAGPEAAEPEITRLCREAEESIVAGKWLELASLMVTSAELVSSKIPEKDLECTYTIICSLVKNANNLEDVLEMVKVISSKVVQQPNDKASLRLKILFNLYNLL-DHPYARFQVYMKALTLAVDGKVIEYIVPSFKKIDNFLKEW-NIDSKDQRELFLAIANVLRENKSLVKESLKFLTKYLATFSNDDAQV-LDEAKEVAVRAVTEFVKAS-SIFQCDLLDLPAVAQLEKDTKYEPVYQLLKIFLTQRLNAFMEFKNANSGFLESYGLVDEDCVTKMRLLSLVDLASDESGKIPYTLIKDTLQVNEEEVELWIVKAITAKLIDCKMDQMNQVVIVSRCSEREFGSKQWQSLRTKLATWRDNIANIISTIEANKVTEEGSQA 403          
BLAST of NO10G01910 vs. NCBI_GenBank
Match: XP_002882213.1 (eukaryotic translation initiation factor 3 subunit M [Arabidopsis lyrata subsp. lyrata] >EFH58472.1 proteasome family protein [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 203.0 bits (515), Expect = 2.200e-48
Identity = 132/410 (32.20%), Postives = 231/410 (56.34%), Query Frame = 0
Query:   76 TTAYASSEPSSLLSIVDRTAYDRLIKSIADDLPQATQQKFREEAKECTDYARARKLIE---LVLAQSAVIMARPVEKDIEGSYQVLISLLDRLSDPADLPVMVERLVSNLRSSANEKPGLRLKLLSNFYNLLKSGTPERFQVLLAIIEYARDTKQLEVLSDFFANLEDWKKNWRHLSEKNERQLYLLVSDTL-ASAGKNSEAHHFLIKYISTFSEQDTDLDLSETAALAVKGVIGAVKQPLTALSSSLLGLPAVKRLAADPAHKTVHELLQVFSFGKLADFLEYESKYPGVLAAQGVDREKALRDMRLLS-VSLLAAEYEEIPYSAVSATLQIPHDEVESWVVQAITAKLLEAKMDQQQEVVMVTRASHRHFSRRDWSRLQEKLHLWRQNVSSLLDSLRDKRVPAPTHQA 481
            TT   +SE    L++V  T+      + AD  P+A + +     +E  +     K +E   L++  + ++ ++  EKD+E +Y ++ S++ ++  P D+  +V+ + S +    ++K  LRLK+L N YNL+      RFQV +  +  A D K  E +   F  ++++ K W ++  K++R+L+L +++ L  +    +E+  FL KY++TFS +DT + L E    AV+ VI  VK   T     LL LPAV +L  D  +  V++LL++F   +L  + E+++  P  L + G+  E  +  MRLLS V L + E  +IPY+++   LQ+  ++VE W+V+AITAKL++ KMDQ  +VV+V+R+S R F  + W  L+ KL  W+ N+S+++ ++   +V     QA
Sbjct:    2 TTIVPTSEEDPFLAVVRFTSQ----LAWADAGPEAAEPEITRLCREAEESIVKEKWLELSTLMVTSAELVSSKISEKDLECTYTIICSIVKKVESPEDVLAIVKAIASEVAQQPSDKASLRLKILFNLYNLV-DHPYARFQVYMKALTLAVDGKVTEYIVSSFKKIDNFLKEW-NIDIKDQRELFLAIANVLKENKSLVNESLKFLTKYLATFSNEDTQV-LDEAKEEAVRAVIEFVKAS-TIFQCDLLDLPAVAQLEKDAKYAPVYQLLKIFLTQRLNAYTEFQNANPEFLQSYGLADEDCVSKMRLLSLVDLASDESGKIPYASIKDALQVNEEDVELWIVKAITAKLIDCKMDQMNQVVIVSRSSEREFGTKQWQSLRTKLATWKDNISNIITTIESNKVTEEGSQA 403          
BLAST of NO10G01910 vs. NCBI_GenBank
Match: XP_007215464.1 (eukaryotic translation initiation factor 3 subunit M [Prunus persica] >ONI18991.1 hypothetical protein PRUPE_3G252000 [Prunus persica])

HSP 1 Score: 203.0 bits (515), Expect = 2.200e-48
Identity = 142/411 (34.55%), Postives = 228/411 (55.47%), Query Frame = 0
Query:   76 TTAYASSEPSSLLSIVDRTAYDRLIKSIADDLPQATQ---QKFREEAKECTDYARARKLIELVLAQSAVIMARPVEKDIEGSYQVLISLLDRLSDPADLPVMVERLVSNLRSSANEKPGLRLKLLSNFYNLLKSGTPERFQVLLAIIEYARDTKQLEVLSDFFANLEDWKKNWRHLSEKNERQLYLLVSDTLAS-AGKNSEAHHFLIKYISTFSEQDTDLDLSETAALAVKGVIGAVKQPLTALSSSLLGLPAVKRLAADPAHKTVHELLQVFSFGKLADFLEYESKYPGVLAAQGVDREKALRDMRLLS-VSLLAAEYEEIPYSAVSATLQIPHDEVESWVVQAITAKLLEAKMDQQQEVVMVTRASHRHFSRRDWSRLQEKLHLWRQNVSSLLDSLRDKRVPAPTHQAL 482
            TT   +SE    LS+V  T+      S AD  P+  +    +   EA+EC   AR   L+ L+L  + VI+++  EKD+E  + V+ +++ +   P +   M + + + +    ++KP LRLK+L N YNLL++    RF V L+ +  A + K  E +   F  +E + K W ++   ++RQL+L +S+ L        E+  FL KY++TFS +D  + LSE    AV+ ++  VK P       LL +PAV +L  D  H   ++LL++F   +L  +LE+++    +L   G+  E  +  MRL+S V L + E   IPYS +  TLQI  D VE WVV+AITAKL++ KMDQ  +VV+V+R + R F ++ W  L+ KL  WR NV++++ ++R  R+     QA+
Sbjct:    2 TTILPTSEEDPALSVVRFTSE----LSWADAGPEVAEPQVSRLCTEAQECMVMARWFDLVSLMLTSADVILSKVSEKDLECIFTVICNVVTKSESPDEALEMAKLISAKITQQPSDKPALRLKILFNLYNLLEN-PYSRFFVYLSALNLAINGKVTEHVIPSFKKIESFLKEW-NIGVSDQRQLFLTISNVLREHKSLAKESFKFLSKYLATFSGEDAYI-LSEAKEEAVRTIVEFVKAP-DLFQCDLLDMPAVGQLEKDAKHALAYQLLKIFLTQRLDAYLEFQTANSTLLKGYGLVHEDCITKMRLISLVDLGSDESGRIPYSLIRDTLQINDDVVELWVVKAITAKLMDCKMDQMNQVVIVSRCTERVFGQQQWLTLRSKLATWRGNVANVISTIRANRIAEDGSQAV 404          
BLAST of NO10G01910 vs. NCBI_GenBank
Match: NP_186869.2 (Proteasome component (PCI) domain protein [Arabidopsis thaliana] >AAL32800.1 Unknown protein [Arabidopsis thaliana] >AAM13342.1 unknown protein [Arabidopsis thaliana] >AEE73778.1 Proteasome component (PCI) domain protein [Arabidopsis thaliana] >OAP05364.1 hypothetical protein AXX17_AT3G01390 [Arabidopsis thaliana])

HSP 1 Score: 202.6 bits (514), Expect = 2.800e-48
Identity = 133/410 (32.44%), Postives = 229/410 (55.85%), Query Frame = 0
Query:   76 TTAYASSEPSSLLSIVDRTAYDRLIKSIADDLPQATQQKFREEAKECTDYARARKLIE---LVLAQSAVIMARPVEKDIEGSYQVLISLLDRLSDPADLPVMVERLVSNLRSSANEKPGLRLKLLSNFYNLLKSGTPERFQVLLAIIEYARDTKQLEVLSDFFANLEDWKKNWRHLSEKNERQLYLLVSDTL-ASAGKNSEAHHFLIKYISTFSEQDTDLDLSETAALAVKGVIGAVKQPLTALSSSLLGLPAVKRLAADPAHKTVHELLQVFSFGKLADFLEYESKYPGVLAAQGVDREKALRDMRLLS-VSLLAAEYEEIPYSAVSATLQIPHDEVESWVVQAITAKLLEAKMDQQQEVVMVTRASHRHFSRRDWSRLQEKLHLWRQNVSSLLDSLRDKRVPAPTHQA 481
            TT   +SE +  L++V  T+      + AD  P+A + +     +E  +   A K +E   L++  + ++ ++  EKD+E +Y ++ S++     P  +  MV+ + S +    ++K  LRLK+L N YNL+      RFQV +  +  A D K  E +   F  ++++ K W ++  K++R+L+L +++ L  +    +E+  FL KY++TFS +D  + L E    AV+ VI  VK   +     LL LPAV +L  D  +  V++LL++F   +L  + E+++   G L + G+  E  +  MRLLS V L + E  +IPY+++  TLQ+   +VE W+V+AITAKL+E KMDQ  +V++V+R+S R F  + W  L+ KL  W+ N+SS++ ++   +V     QA
Sbjct:    2 TTIVPTSEENPFLAVVRFTSQ----LAWADAGPEAAEPEITRLCREAEESMVAEKWLELSSLMVTSAELVSSKISEKDLECTYTIICSIVKNAKSPEQVLEMVKAIASKVAQQPSDKASLRLKILFNLYNLV-DHPYARFQVYMKALTLAVDGKVTEYIVSSFKKIDNFLKEW-NIDIKDQRELFLAIANVLKENKSLVNESLKFLTKYLATFSNEDAQV-LDEAKEEAVRAVIEFVKAS-SIFQCDLLDLPAVAQLEKDAKYAPVYQLLKIFLTQRLNAYTEFQNANSGFLQSYGLSNEDCVTKMRLLSLVDLASDESGKIPYTSIKDTLQVNEQDVELWIVKAITAKLIECKMDQMNQVLIVSRSSEREFGTKQWQSLRTKLATWKDNISSIITTIESNKVTEEGSQA 403          
BLAST of NO10G01910 vs. NCBI_GenBank
Match: XP_008379439.1 (PREDICTED: eukaryotic translation initiation factor 3 subunit M-like [Malus domestica])

HSP 1 Score: 202.6 bits (514), Expect = 2.800e-48
Identity = 139/412 (33.74%), Postives = 231/412 (56.07%), Query Frame = 0
Query:   76 TTAYASSEPSSLLSIVDRT---AYDRLIKSIADDLPQATQQKFREEAKECTDYARARKLIELVLAQSAVIMARPVEKDIEGSYQVLISLLDRLSDPADLPVMVERLVSNLRSSANEKPGLRLKLLSNFYNLLKSGTPERFQVLLAIIEYARDTKQLEVLSDFFANLEDWKKNWRHLSEKNERQLYLLVSDTLASAGKN--SEAHHFLIKYISTFSEQDTDLDLSETAALAVKGVIGAVKQPLTALSSSLLGLPAVKRLAADPAHKTVHELLQVFSFGKLADFLEYESKYPGVLAAQGVDREKALRDMRLLSVSLLAA-EYEEIPYSAVSATLQIPHDEVESWVVQAITAKLLEAKMDQQQEVVMVTRASHRHFSRRDWSRLQEKLHLWRQNVSSLLDSLRDKRVPAPTHQAL 482
            TT   +SE    L++V  T   A+      +A+  PQ T  +   EA+EC +  R+  L+ L+L  + VI+++  EKD+E  + V+ +++ +   P +   M + + S +    ++KP LR+K+L N YNLL++    RF V L+ +  A + K  E +   F  +E + K W ++   ++RQL+L +++ L    KN   E+  FL KY++TFS +D    LSE    AV+ ++  VK P       LL +PAV++L  D  H   ++LL++F   +L  +LE+++    +L + G+  E  +  MRL+S+  L   E  +IPY  +  TL+I  DEVE WVV+AITAKL++ KMDQ  +VV+V+R + R F    W  L+ KL  WR N+++++ ++R  R+     QA+
Sbjct:    2 TTVVQTSEEDPALAVVRFTSELAWADAGHEVAE--PQVT--RLCAEAQECVEMGRSFDLVSLMLTSAEVILSKVSEKDLECIFTVICNVVTKSESPDEALEMAKLISSKITQKPSDKPALRVKILFNLYNLLEN-PYSRFLVYLSALNLAINGKVAEHVIPSFKKVESFLKEW-NIGISDQRQLFLAIANVL-KEHKNLAKESFKFLTKYLATFSGEDAH-TLSEAKEEAVRTIVEFVKAP-DMFQCDLLNMPAVEQLEKDTKHALAYQLLKIFLTQRLDAYLEFQAANSDLLKSYGLGHEDCITKMRLISLMDLGXDESGQIPYGVIRDTLKINDDEVELWVVKAITAKLMDCKMDQMNQVVIVSRCTLRVFGEEQWLTLRTKLATWRGNIANVISTIRANRIADDGSQAV 404          
BLAST of NO10G01910 vs. NCBI_GenBank
Match: XP_009365897.1 (PREDICTED: eukaryotic translation initiation factor 3 subunit M-like isoform X2 [Pyrus x bretschneideri])

HSP 1 Score: 202.6 bits (514), Expect = 2.800e-48
Identity = 143/412 (34.71%), Postives = 229/412 (55.58%), Query Frame = 0
Query:   76 TTAYASSEPSSLLSIVDRT---AYDRLIKSIADDLPQATQQKFREEAKECTDYARARKLIELVLAQSAVIMARPVEKDIEGSYQVLISLLDRLSDPADLPVMVERLVSNLRSSANEKPGLRLKLLSNFYNLLKSGTPERFQVLLAIIEYARDTKQLEVLSDFFANLEDWKKNWRHLSEKNERQLYLLVSDTLASAGKN--SEAHHFLIKYISTFSEQDTDLDLSETAALAVKGVIGAVKQPLTALSSSLLGLPAVKRLAADPAHKTVHELLQVFSFGKLADFLEYESKYPGVLAAQGVDREKALRDMRLLS-VSLLAAEYEEIPYSAVSATLQIPHDEVESWVVQAITAKLLEAKMDQQQEVVMVTRASHRHFSRRDWSRLQEKLHLWRQNVSSLLDSLRDKRVPAPTHQAL 482
            TT   +SE    L++V  T   A+      +A+  PQ T  +  +EA+EC    R   L+ L+L  + VI+++  EKD+E    V+ +++ +   P +   M + + S +    ++KP LRLK+L N YNLL++    RF V L+ +  A + K  E +   F  +E + K W ++   ++RQL+L +++ L    KN   E+  FL KY++TFS +D    LSE    AV+ ++  VK P       LL +PAV++L  D  H   ++LL++F   +L  +LE+++    +L + G+  E  +  MRL+S + L + E   IPY  +  TLQI  DEVE WVV+AITAKL++ KMDQ  +VV+V+R S R F    W  L+ KL  WR NV++++ ++R  R+     QA+
Sbjct:    2 TTVVQTSEEDPALAVVRFTSELAWADAGHEVAE--PQVT--RLCDEAQECVVMGRWFDLVSLMLTSAEVILSKVSEKDLECVLTVICNVVTKSESPDEALEMAKLISSKITQKPSDKPALRLKILFNLYNLLEN-PYSRFLVYLSALNLAINGKAAEHVIPSFKKVESFLKEW-NIGISDQRQLFLAIANVL-KEHKNLAKESFKFLTKYLATFSGEDAH-TLSEAKEEAVRTIVEFVKAP-GMFQCDLLNMPAVEQLEKDAKHALAYQLLKIFLTQRLDAYLEFQAANSDLLKSYGLGHEDCITKMRLISLMDLGSGESGRIPYGVIRDTLQINDDEVELWVVKAITAKLMDCKMDQMNQVVVVSRCSLRIFGEEQWLTLRTKLASWRGNVANVIGTIRANRIADDGSQAV 404          
BLAST of NO10G01910 vs. NCBI_GenBank
Match: XP_010463617.1 (PREDICTED: eukaryotic translation initiation factor 3 subunit M-like [Camelina sativa])

HSP 1 Score: 202.2 bits (513), Expect = 3.700e-48
Identity = 136/410 (33.17%), Postives = 229/410 (55.85%), Query Frame = 0
Query:   76 TTAYASSEPSSLLSIVDRTAYDRLIKSIADDLPQATQQKFR---EEAKECTDYARARKLIELVLAQSAVIMARPVEKDIEGSYQVLISLLDRLSDPADLPVMVERLVSNLRSSANEKPGLRLKLLSNFYNLLKSGTPERFQVLLAIIEYARDTKQLEVLSDFFANLEDWKKNWRHLSEKNERQLYLLVSDTL-ASAGKNSEAHHFLIKYISTFSEQDTDLDLSETAALAVKGVIGAVKQPLTALSSSLLGLPAVKRLAADPAHKTVHELLQVFSFGKLADFLEYESKYPGVLAAQGVDREKALRDMRLLS-VSLLAAEYEEIPYSAVSATLQIPHDEVESWVVQAITAKLLEAKMDQQQEVVMVTRASHRHFSRRDWSRLQEKLHLWRQNVSSLLDSLRDKRVPAPTHQA 481
            TT   +SE    L++V  T+      + AD  P+A + +     +EA+E     ++ +L  L++  + ++ ++  EKD+E +Y ++ SL+  +  P +L  MV+ + S +    ++K  LRLK+L N YNLL      RFQV +  +  A D K  E +   F  ++++ K W ++  K++R+L+L +++ L  +     E+  FL KY++TFS +D    L E    AV+ VI  VK   +     LL LPAV +L  D  +  V++LL++F   +L  + E+++     L + G+  E  L  MRLLS V L + E  +IPY+++  TL++  +EVE W+V+AITAKL++ KMDQ  +VV+V+R S R F  + W  L+ KL  WR N+S+++ ++   +V     QA
Sbjct:    2 TTIVPTSEEDPFLAVVRFTSQ----LAWADAGPEAAEPEINRLCKEAEESIGAGKSLELATLMVTSAELVSSKISEKDLECTYTIICSLVKNVKSPEELLEMVKVISSKVAQQPSDKASLRLKILFNLYNLL-DHPYARFQVYMKALTLAVDGKVTEYIVSSFKKIDNFLKEW-NIDIKDQRELFLAIANVLKENKSLVKESLTFLTKYLATFSNEDAQ-GLDEAKEEAVRAVIEFVKAS-SIFQCDLLDLPAVAQLEKDAKYAPVYQLLKIFLTQRLNAYTEFQNANSDFLQSHGLVDEDCLTKMRLLSLVDLASDESGKIPYASIKDTLEVNEEEVELWIVRAITAKLIDCKMDQMNQVVIVSRCSEREFGTKQWQSLRTKLATWRDNISNIITTIESNKVTEEGSQA 403          
BLAST of NO10G01910 vs. NCBI_GenBank
Match: XP_008230907.1 (PREDICTED: eukaryotic translation initiation factor 3 subunit M-like [Prunus mume])

HSP 1 Score: 201.4 bits (511), Expect = 6.300e-48
Identity = 141/411 (34.31%), Postives = 228/411 (55.47%), Query Frame = 0
Query:   76 TTAYASSEPSSLLSIVDRTAYDRLIKSIADDLPQATQ---QKFREEAKECTDYARARKLIELVLAQSAVIMARPVEKDIEGSYQVLISLLDRLSDPADLPVMVERLVSNLRSSANEKPGLRLKLLSNFYNLLKSGTPERFQVLLAIIEYARDTKQLEVLSDFFANLEDWKKNWRHLSEKNERQLYLLVSDTLAS-AGKNSEAHHFLIKYISTFSEQDTDLDLSETAALAVKGVIGAVKQPLTALSSSLLGLPAVKRLAADPAHKTVHELLQVFSFGKLADFLEYESKYPGVLAAQGVDREKALRDMRLLS-VSLLAAEYEEIPYSAVSATLQIPHDEVESWVVQAITAKLLEAKMDQQQEVVMVTRASHRHFSRRDWSRLQEKLHLWRQNVSSLLDSLRDKRVPAPTHQAL 482
            TT   +SE    LS+V  T+      S AD  P+  +    +   EA+EC   AR   L+ L+L  + VI+++  EKD+E  + V+ +++ +   P +   M + + + +    ++KP LRLK+L N YNLL++    RF V L+ +  A + K  E +   F  +E + K W ++   +ERQL+L +S+ L        E+  FL KY++TFS +D  + LSE    AV+ ++  VK P       LL +PAV +L  D  H   ++LL++F   +L  +LE+++    +L   G+  E  +  MRL+S V L + E   IPY+ +  TLQI  + VE WVV+AITAKL++ KMDQ  +VV+V+R + R F ++ W  L+ KL  WR NV++++ ++R  R+     QA+
Sbjct:    2 TTILPTSEEDPALSVVRFTSE----LSWADAGPEVAEPQVSRLCTEAQECMVMARWFDLVSLMLTSADVILSKVSEKDLECIFTVICNVVTKSESPDEALEMAKLISAKITQQPSDKPALRLKILFNLYNLLEN-PYSRFFVYLSALNLAINGKVTEHVIPSFKKIESFLKEW-NIGVSDERQLFLTISNVLREHKSLAKESFKFLSKYLATFSGEDAYI-LSEAKEEAVRTIVEFVKAP-DLFQCDLLDMPAVGQLEKDAKHALAYQLLKIFLTQRLDAYLEFQAANSTLLKGYGLVHEDCITKMRLISLVDLGSDESGRIPYNLIRDTLQINDEGVELWVVKAITAKLMDCKMDQMNQVVIVSRCTERVFGQQQWLTLRSKLATWRGNVANVISTIRANRIAEDGSQAV 404          
The following BLAST results are available for this feature:
BLAST of NO10G01910 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25402.17.200e-16974.48proteasome component domain protein [Nannochlorops... [more]
CBJ27541.12.700e-6740.96conserved unknown protein [Ectocarpus siliculosus][more]
XP_006408436.11.700e-4833.17eukaryotic translation initiation factor 3 subunit... [more]
XP_002882213.12.200e-4832.20eukaryotic translation initiation factor 3 subunit... [more]
XP_007215464.12.200e-4834.55eukaryotic translation initiation factor 3 subunit... [more]
NP_186869.22.800e-4832.44Proteasome component (PCI) domain protein [Arabido... [more]
XP_008379439.12.800e-4833.74PREDICTED: eukaryotic translation initiation facto... [more]
XP_009365897.12.800e-4834.71PREDICTED: eukaryotic translation initiation facto... [more]
XP_010463617.13.700e-4833.17PREDICTED: eukaryotic translation initiation facto... [more]
XP_008230907.16.300e-4834.31PREDICTED: eukaryotic translation initiation facto... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL054nonsL054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR012ngnoR012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001069NSK001069Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G01910.1NO10G01910.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|565237gene_4022Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100005g55gene5086Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G01910.1NO10G01910.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G01910 ID=NO10G01910|Name=NO10G01910|organism=Nannochloropsis oceanica|type=gene|length=2245bp
TGTGCCCTAGAATGCTTTTATCGCTGCCGACATCAAGATCTTGGTCGTCC
AGGTTTGACTCGCGACACACAAGCGCTGCGAGCGTGCATGGGCCGGGAAA
GGTGGCGCGAGGTCTTTCTGTGGTCAGAGGCGAGCGGAGGCGAGGCACAT
GCATATGCTTCTTCACATCCCTGATCACAACTCAAATTCTAATTGCCCTC
AGAGCAAAGTCTCTCTGGCGTATTGTCATGCTGCAGTTGCCAGCTTGGGC
TCAACTCCCCCTCTCCGTGTTTGTTCATCACGAATACACACACTCACACA
TACATGCACAGAGGGAAATAGCCTCCTCTCCCAGGCTAGAATGCCTGCTC
ATACACATGCCAGCATGCCAGCCACCACGGCCTACGCCTCTTCGGAGCCC
TCCAGCCTCTTGTCTATTGTAGATCGGACCGCCTATGACCGCCTTATCAA
GTCTATCGCAGACGATCTGCCCCAAGCGACGCAGCAAAAGTTCCGAGgta
gggaaggagtcaatatggacgatgatagtagatgagagctggataggcta
ggctaagctgcatccatgctgcgtacacacattttgccacccactcacac
gtacacaaaaagAGGAGGCCAAGGAGTGCACAGATTACGCGAGGGCACGA
AAGCTGATTGAGTTGGTGCTGGCGCAAAGCGCTGTTATCATGGCCCGGCC
AGTGGAGAAGGACATCGAGGGCTCCTACCAGgtaagaagacggacgacta
agcccctgcttctactcaagtaaagagcggaatgcgtttacagcttcccc
ctggattatcaccttaccattgtcctcgcatgtacacagGTGCTGATCTC
CTTGCTAGACCGACTGTCGGACCCGGCAGACCTTCCCGTCATGGTCGAGC
GACTCGTGAGCAACCTCCGCTCCTCCGCAAACGAGAAACCCGGTCTTCGg
taagacattgtcgataacttctgctcaatgtcaattgcttctcatttctc
ctttctctgttactacgcattttcttccaaccccatttcgtcttcctcct
catcctccccttcacgtctacagATTGAAGCTCCTCTCCAATTTCTACAA
CCTCCTTAAGTCTGGCACACCCGAACGCTTCCAGGTCCTTTTGGCTATCA
TTGAATATGCACGCGACACCAAGCAGgtgcgtttgtggtcgagacaatgg
gtgaaagactagaaggatgtacacggcctcacagaaaaatgcatggttct
tgcttttctcttacattttaacgcttcattcctctcgcatttacttcgcg
cccacagCTGGAGGTACTTTCGGACTTTTTCGCGAATCTTGAGGACTGGA
AGAAGAATTGGCGGCACCTCTCAGAGAAGAACGAGCGACAGCTCTACCTG
CTAGTGTCGGACACTCTGGCGAGCGCCGGCAAGAACTCGGAGGCCCACCA
CTTCCTCATCAAGTACATTTCCACCTTCTCGGAGCAAGACACCGACCTTG
ATCTTTCCGAGACGGCGGCACTGGCGGTCAAGGGCGTGATTGGAGCCGTC
AAGCAGCCTTTGACGGCATTGAGTTCCAGTCTTCTGGGTTTGCCCGCGGT
GAAGCGTTTGGCGGCTGACCCGGCACACAAAACCGTGCATGAGTTGCTAC
AGGTTTTCAGCTTTGGAAAGCTCGCTGATTTTTTGGAGTATGAGAGCAAG
TACCCGGGCGTTCTGGCGGCGCAGGGCGTGGACCGCGAGAAGGCCTTGCG
GGACATGCGTCTTCTGTCTGTGAGCTTGCTGGCGGCCGAGTACGAAGAGA
TCCCGTACTCGGCGGTATCGGCCACGTTGCAAATCCCGCACGACGAAGTG
GAGAGCTGGGTAGTGCAAGCCATCACTGCCAAGTTGCTGGAGGCCAAAAT
GGACCAGCAGCAGGAGGTAGTGATGGTCACGCGGGCGTCGCACCGGCATT
TCTCCCGCCGGGACTGGTCCAGGCTCCAGGAGAAACTTCACTTGTGGCGT
CAGAACGTCAGCAGCCTTCTTGACTCCCTCCGTGATAAGAGGGTGCCCGC
TCCCACCCACCAGGCACTGCACCATCATCACCGCGGCTCCTCCCATTCTA
ATTAGAGGTCAAAGAGGGAGTATGACCAAATGGAAGAGAGGTTGTGTCTT
GCGAAGCGACGACGATGAATGTAGGTGGATCCCTTTTTTTGCAGTTGTTA
TTAGATGGAAAGAAGGAAAGAAATAAGTAAGTCGTATAACAAGCA
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protein sequence of NO10G01910.1

>NO10G01910.1-protein ID=NO10G01910.1-protein|Name=NO10G01910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=493bp
MHMLLHIPDHNSNSNCPQSKVSLAYCHAAVASLGSTPPLRVCSSRIHTLT
HTCTEGNSLLSQARMPAHTHASMPATTAYASSEPSSLLSIVDRTAYDRLI
KSIADDLPQATQQKFREEAKECTDYARARKLIELVLAQSAVIMARPVEKD
IEGSYQVLISLLDRLSDPADLPVMVERLVSNLRSSANEKPGLRLKLLSNF
YNLLKSGTPERFQVLLAIIEYARDTKQLEVLSDFFANLEDWKKNWRHLSE
KNERQLYLLVSDTLASAGKNSEAHHFLIKYISTFSEQDTDLDLSETAALA
VKGVIGAVKQPLTALSSSLLGLPAVKRLAADPAHKTVHELLQVFSFGKLA
DFLEYESKYPGVLAAQGVDREKALRDMRLLSVSLLAAEYEEIPYSAVSAT
LQIPHDEVESWVVQAITAKLLEAKMDQQQEVVMVTRASHRHFSRRDWSRL
QEKLHLWRQNVSSLLDSLRDKRVPAPTHQALHHHHRGSSHSN*
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Synonyms
Publications