NO10G01910.1, NO10G01910.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G01910.1
Unique NameNO10G01910.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1767
Alignment locationchr10:530722..532966 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:530722..532966 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G01910.1 vs.
Match: EWM25402.1 (proteasome component domain protein [Nannochloropsis gaditana])

HSP 1 Score: 603.2 bits (1554), Expect = 7.200e-169
Identity = 324/435 (74.48%), Postives = 371/435 (85.29%), Query Frame = 0 
Query:   63 ARMPAHTHASMPATTAYASSEPSSLLSIVDRTAYDRLIKSIADDLPQATQQKFREEAKECTDYARARKLIELVLAQSAVIMARPVEKDIEGSYQVLISLLDRLSDPADLPVMVERLVSNLRSSANEKPGLRLKLLSNFYNLLKSGTPERFQVLLAIIEYARDTKQLEVLSDFFANLEDWKKNWRHLSEKNERQLYLLVSDTLASAGKNSEAHHFLIKYISTFSEQDTDLDLSETAALAVKGVIGAVKQPLTAL--SSSLLGLPAVKRLAADPAHKTVHELLQVFSFGKLADFLEYESKYPGVLAAQGVDREKALRDMRLLSVSLLAAEYEEIPYSAVSATLQIPHDEVESWVVQAITAKLLEAKMDQQQEVVMVTRASHRHFSRRDWSRLQEKLHLWRQNVSSLLDSLRDK---RVPAPTHQALHHHHRGSSHSN 493
            +R+P+     MPA +A  SSEPSSLLSIVDRTAYDRLIKSIAD LP++T+ +FR+EAKECTDYARARKLIEL+LAQSAVIMARP EKDIEGSYQVLISLLDRLSDP DLP+MV++++SNLR+S  +KP LRLKLL NFYNLLKSGT ERFQVLL IIEYARDTKQL++LSDFFA+LE+WKKNWRHLS ++ERQLYLLVS+TLA +GK +EA  FLIKY++TF E D  LD   T ALAVKGVIGAV++PL AL  +S LL LPAVKRLA+DPAHK VHELL++F FGKLAD  EYE + PGVL A GV REKA RDMRLLS+SLLAAEYEEIPY AVSATLQ+PH++VESWVV+AITA+LLEAKMDQ+QEVVMVTRASHRHFS ++W RLQEKLH+WRQNVSSLL SLR+K   R  A   Q    + R SSHSN
Sbjct:   19 SRLPS---VEMPADSASVSSEPSSLLSIVDRTAYDRLIKSIADALPESTRSQFRDEAKECTDYARARKLIELILAQSAVIMARPTEKDIEGSYQVLISLLDRLSDPEDLPIMVDKILSNLRASVEDKPSLRLKLLCNFYNLLKSGTSERFQVLLVIIEYARDTKQLDILSDFFADLENWKKNWRHLSAEDERQLYLLVSETLAGSGKVAEAQLFLIKYLATFRETDPGLDTPVTVALAVKGVIGAVREPLNALRSASDLLSLPAVKRLASDPAHKAVHELLEIFCFGKLADLTEYEDRNPGVLEANGVGREKAFRDMRLLSLSLLAAEYEEIPYEAVSATLQVPHEDVESWVVEAITARLLEAKMDQEQEVVMVTRASHRHFSHQNWLRLQEKLHVWRQNVSSLLVSLREKKGARTQASRVQESQQYVR-SSHSN 449
The following BLAST results are available for this feature:
BLAST of NO10G01910.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25402.17.200e-16974.48proteasome component domain protein [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G01910NO10G01910Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G01910.1NO10G01910.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G01910.1.cds1NO10G01910.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G01910.1.cds2NO10G01910.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G01910.1.cds3NO10G01910.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G01910.1.cds4NO10G01910.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G01910.1.cds5NO10G01910.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G01910.1 ID=NO10G01910.1|Name=NO10G01910.1|organism=Nannochloropsis oceanica|type=mRNA|length=1767bp
TGTGCCCTAGAATGCTTTTATCGCTGCCGACATCAAGATCTTGGTCGTCC
AGGTTTGACTCGCGACACACAAGCGCTGCGAGCGTGCATGGGCCGGGAAA
GGTGGCGCGAGGTCTTTCTGTGGTCAGAGGCGAGCGGAGGCGAGGCACAT
GCATATGCTTCTTCACATCCCTGATCACAACTCAAATTCTAATTGCCCTC
AGAGCAAAGTCTCTCTGGCGTATTGTCATGCTGCAGTTGCCAGCTTGGGC
TCAACTCCCCCTCTCCGTGTTTGTTCATCACGAATACACACACTCACACA
TACATGCACAGAGGGAAATAGCCTCCTCTCCCAGGCTAGAATGCCTGCTC
ATACACATGCCAGCATGCCAGCCACCACGGCCTACGCCTCTTCGGAGCCC
TCCAGCCTCTTGTCTATTGTAGATCGGACCGCCTATGACCGCCTTATCAA
GTCTATCGCAGACGATCTGCCCCAAGCGACGCAGCAAAAGTTCCGAGAGG
AGGCCAAGGAGTGCACAGATTACGCGAGGGCACGAAAGCTGATTGAGTTG
GTGCTGGCGCAAAGCGCTGTTATCATGGCCCGGCCAGTGGAGAAGGACAT
CGAGGGCTCCTACCAGGTGCTGATCTCCTTGCTAGACCGACTGTCGGACC
CGGCAGACCTTCCCGTCATGGTCGAGCGACTCGTGAGCAACCTCCGCTCC
TCCGCAAACGAGAAACCCGGTCTTCGATTGAAGCTCCTCTCCAATTTCTA
CAACCTCCTTAAGTCTGGCACACCCGAACGCTTCCAGGTCCTTTTGGCTA
TCATTGAATATGCACGCGACACCAAGCAGCTGGAGGTACTTTCGGACTTT
TTCGCGAATCTTGAGGACTGGAAGAAGAATTGGCGGCACCTCTCAGAGAA
GAACGAGCGACAGCTCTACCTGCTAGTGTCGGACACTCTGGCGAGCGCCG
GCAAGAACTCGGAGGCCCACCACTTCCTCATCAAGTACATTTCCACCTTC
TCGGAGCAAGACACCGACCTTGATCTTTCCGAGACGGCGGCACTGGCGGT
CAAGGGCGTGATTGGAGCCGTCAAGCAGCCTTTGACGGCATTGAGTTCCA
GTCTTCTGGGTTTGCCCGCGGTGAAGCGTTTGGCGGCTGACCCGGCACAC
AAAACCGTGCATGAGTTGCTACAGGTTTTCAGCTTTGGAAAGCTCGCTGA
TTTTTTGGAGTATGAGAGCAAGTACCCGGGCGTTCTGGCGGCGCAGGGCG
TGGACCGCGAGAAGGCCTTGCGGGACATGCGTCTTCTGTCTGTGAGCTTG
CTGGCGGCCGAGTACGAAGAGATCCCGTACTCGGCGGTATCGGCCACGTT
GCAAATCCCGCACGACGAAGTGGAGAGCTGGGTAGTGCAAGCCATCACTG
CCAAGTTGCTGGAGGCCAAAATGGACCAGCAGCAGGAGGTAGTGATGGTC
ACGCGGGCGTCGCACCGGCATTTCTCCCGCCGGGACTGGTCCAGGCTCCA
GGAGAAACTTCACTTGTGGCGTCAGAACGTCAGCAGCCTTCTTGACTCCC
TCCGTGATAAGAGGGTGCCCGCTCCCACCCACCAGGCACTGCACCATCAT
CACCGCGGCTCCTCCCATTCTAATTAGAGGTCAAAGAGGGAGTATGACCA
AATGGAAGAGAGGTTGTGTCTTGCGAAGCGACGACGATGAATGTAGGTGG
ATCCCTTTTTTTGCAGTTGTTATTAGATGGAAAGAAGGAAAGAAATAAGT
AAGTCGTATAACAAGCA
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protein sequence of NO10G01910.1

>NO10G01910.1-protein ID=NO10G01910.1-protein|Name=NO10G01910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=493bp
MHMLLHIPDHNSNSNCPQSKVSLAYCHAAVASLGSTPPLRVCSSRIHTLT
HTCTEGNSLLSQARMPAHTHASMPATTAYASSEPSSLLSIVDRTAYDRLI
KSIADDLPQATQQKFREEAKECTDYARARKLIELVLAQSAVIMARPVEKD
IEGSYQVLISLLDRLSDPADLPVMVERLVSNLRSSANEKPGLRLKLLSNF
YNLLKSGTPERFQVLLAIIEYARDTKQLEVLSDFFANLEDWKKNWRHLSE
KNERQLYLLVSDTLASAGKNSEAHHFLIKYISTFSEQDTDLDLSETAALA
VKGVIGAVKQPLTALSSSLLGLPAVKRLAADPAHKTVHELLQVFSFGKLA
DFLEYESKYPGVLAAQGVDREKALRDMRLLSVSLLAAEYEEIPYSAVSAT
LQIPHDEVESWVVQAITAKLLEAKMDQQQEVVMVTRASHRHFSRRDWSRL
QEKLHLWRQNVSSLLDSLRDKRVPAPTHQALHHHHRGSSHSN*
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mRNA from alignment at chr10:530722..532966+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G01910.1 ID=NO10G01910.1|Name=NO10G01910.1|organism=Nannochloropsis oceanica|type=mRNA|length=2245bp|location=Sequence derived from alignment at chr10:530722..532966+ (Nannochloropsis oceanica)
TGTGCCCTAGAATGCTTTTATCGCTGCCGACATCAAGATCTTGGTCGTCC
AGGTTTGACTCGCGACACACAAGCGCTGCGAGCGTGCATGGGCCGGGAAA
GGTGGCGCGAGGTCTTTCTGTGGTCAGAGGCGAGCGGAGGCGAGGCACAT
GCATATGCTTCTTCACATCCCTGATCACAACTCAAATTCTAATTGCCCTC
AGAGCAAAGTCTCTCTGGCGTATTGTCATGCTGCAGTTGCCAGCTTGGGC
TCAACTCCCCCTCTCCGTGTTTGTTCATCACGAATACACACACTCACACA
TACATGCACAGAGGGAAATAGCCTCCTCTCCCAGGCTAGAATGCCTGCTC
ATACACATGCCAGCATGCCAGCCACCACGGCCTACGCCTCTTCGGAGCCC
TCCAGCCTCTTGTCTATTGTAGATCGGACCGCCTATGACCGCCTTATCAA
GTCTATCGCAGACGATCTGCCCCAAGCGACGCAGCAAAAGTTCCGAGGTA
GGGAAGGAGTCAATATGGACGATGATAGTAGATGAGAGCTGGATAGGCTA
GGCTAAGCTGCATCCATGCTGCGTACACACATTTTGCCACCCACTCACAC
GTACACAAAAAGAGGAGGCCAAGGAGTGCACAGATTACGCGAGGGCACGA
AAGCTGATTGAGTTGGTGCTGGCGCAAAGCGCTGTTATCATGGCCCGGCC
AGTGGAGAAGGACATCGAGGGCTCCTACCAGGTAAGAAGACGGACGACTA
AGCCCCTGCTTCTACTCAAGTAAAGAGCGGAATGCGTTTACAGCTTCCCC
CTGGATTATCACCTTACCATTGTCCTCGCATGTACACAGGTGCTGATCTC
CTTGCTAGACCGACTGTCGGACCCGGCAGACCTTCCCGTCATGGTCGAGC
GACTCGTGAGCAACCTCCGCTCCTCCGCAAACGAGAAACCCGGTCTTCGG
TAAGACATTGTCGATAACTTCTGCTCAATGTCAATTGCTTCTCATTTCTC
CTTTCTCTGTTACTACGCATTTTCTTCCAACCCCATTTCGTCTTCCTCCT
CATCCTCCCCTTCACGTCTACAGATTGAAGCTCCTCTCCAATTTCTACAA
CCTCCTTAAGTCTGGCACACCCGAACGCTTCCAGGTCCTTTTGGCTATCA
TTGAATATGCACGCGACACCAAGCAGGTGCGTTTGTGGTCGAGACAATGG
GTGAAAGACTAGAAGGATGTACACGGCCTCACAGAAAAATGCATGGTTCT
TGCTTTTCTCTTACATTTTAACGCTTCATTCCTCTCGCATTTACTTCGCG
CCCACAGCTGGAGGTACTTTCGGACTTTTTCGCGAATCTTGAGGACTGGA
AGAAGAATTGGCGGCACCTCTCAGAGAAGAACGAGCGACAGCTCTACCTG
CTAGTGTCGGACACTCTGGCGAGCGCCGGCAAGAACTCGGAGGCCCACCA
CTTCCTCATCAAGTACATTTCCACCTTCTCGGAGCAAGACACCGACCTTG
ATCTTTCCGAGACGGCGGCACTGGCGGTCAAGGGCGTGATTGGAGCCGTC
AAGCAGCCTTTGACGGCATTGAGTTCCAGTCTTCTGGGTTTGCCCGCGGT
GAAGCGTTTGGCGGCTGACCCGGCACACAAAACCGTGCATGAGTTGCTAC
AGGTTTTCAGCTTTGGAAAGCTCGCTGATTTTTTGGAGTATGAGAGCAAG
TACCCGGGCGTTCTGGCGGCGCAGGGCGTGGACCGCGAGAAGGCCTTGCG
GGACATGCGTCTTCTGTCTGTGAGCTTGCTGGCGGCCGAGTACGAAGAGA
TCCCGTACTCGGCGGTATCGGCCACGTTGCAAATCCCGCACGACGAAGTG
GAGAGCTGGGTAGTGCAAGCCATCACTGCCAAGTTGCTGGAGGCCAAAAT
GGACCAGCAGCAGGAGGTAGTGATGGTCACGCGGGCGTCGCACCGGCATT
TCTCCCGCCGGGACTGGTCCAGGCTCCAGGAGAAACTTCACTTGTGGCGT
CAGAACGTCAGCAGCCTTCTTGACTCCCTCCGTGATAAGAGGGTGCCCGC
TCCCACCCACCAGGCACTGCACCATCATCACCGCGGCTCCTCCCATTCTA
ATTAGAGGTCAAAGAGGGAGTATGACCAAATGGAAGAGAGGTTGTGTCTT
GCGAAGCGACGACGATGAATGTAGGTGGATCCCTTTTTTTGCAGTTGTTA
TTAGATGGAAAGAAGGAAAGAAATAAGTAAGTCGTATAACAAGCA
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Coding sequence (CDS) from alignment at chr10:530722..532966+

>NO10G01910.1 ID=NO10G01910.1|Name=NO10G01910.1|organism=Nannochloropsis oceanica|type=CDS|length=1479bp|location=Sequence derived from alignment at chr10:530722..532966+ (Nannochloropsis oceanica)
ATGCATATGCTTCTTCACATCCCTGATCACAACTCAAATTCTAATTGCCC
TCAGAGCAAAGTCTCTCTGGCGTATTGTCATGCTGCAGTTGCCAGCTTGG
GCTCAACTCCCCCTCTCCGTGTTTGTTCATCACGAATACACACACTCACA
CATACATGCACAGAGGGAAATAGCCTCCTCTCCCAGGCTAGAATGCCTGC
TCATACACATGCCAGCATGCCAGCCACCACGGCCTACGCCTCTTCGGAGC
CCTCCAGCCTCTTGTCTATTGTAGATCGGACCGCCTATGACCGCCTTATC
AAGTCTATCGCAGACGATCTGCCCCAAGCGACGCAGCAAAAGTTCCGAGA
GGAGGCCAAGGAGTGCACAGATTACGCGAGGGCACGAAAGCTGATTGAGT
TGGTGCTGGCGCAAAGCGCTGTTATCATGGCCCGGCCAGTGGAGAAGGAC
ATCGAGGGCTCCTACCAGGTGCTGATCTCCTTGCTAGACCGACTGTCGGA
CCCGGCAGACCTTCCCGTCATGGTCGAGCGACTCGTGAGCAACCTCCGCT
CCTCCGCAAACGAGAAACCCGGTCTTCGATTGAAGCTCCTCTCCAATTTC
TACAACCTCCTTAAGTCTGGCACACCCGAACGCTTCCAGGTCCTTTTGGC
TATCATTGAATATGCACGCGACACCAAGCAGCTGGAGGTACTTTCGGACT
TTTTCGCGAATCTTGAGGACTGGAAGAAGAATTGGCGGCACCTCTCAGAG
AAGAACGAGCGACAGCTCTACCTGCTAGTGTCGGACACTCTGGCGAGCGC
CGGCAAGAACTCGGAGGCCCACCACTTCCTCATCAAGTACATTTCCACCT
TCTCGGAGCAAGACACCGACCTTGATCTTTCCGAGACGGCGGCACTGGCG
GTCAAGGGCGTGATTGGAGCCGTCAAGCAGCCTTTGACGGCATTGAGTTC
CAGTCTTCTGGGTTTGCCCGCGGTGAAGCGTTTGGCGGCTGACCCGGCAC
ACAAAACCGTGCATGAGTTGCTACAGGTTTTCAGCTTTGGAAAGCTCGCT
GATTTTTTGGAGTATGAGAGCAAGTACCCGGGCGTTCTGGCGGCGCAGGG
CGTGGACCGCGAGAAGGCCTTGCGGGACATGCGTCTTCTGTCTGTGAGCT
TGCTGGCGGCCGAGTACGAAGAGATCCCGTACTCGGCGGTATCGGCCACG
TTGCAAATCCCGCACGACGAAGTGGAGAGCTGGGTAGTGCAAGCCATCAC
TGCCAAGTTGCTGGAGGCCAAAATGGACCAGCAGCAGGAGGTAGTGATGG
TCACGCGGGCGTCGCACCGGCATTTCTCCCGCCGGGACTGGTCCAGGCTC
CAGGAGAAACTTCACTTGTGGCGTCAGAACGTCAGCAGCCTTCTTGACTC
CCTCCGTGATAAGAGGGTGCCCGCTCCCACCCACCAGGCACTGCACCATC
ATCACCGCGGCTCCTCCCATTCTAATTAG
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Synonyms
Publications