NO10G01830, NO10G01830 (gene) Nannochloropsis oceanica

Overview
NameNO10G01830
Unique NameNO10G01830
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1346
Alignment locationchr10:509918..511263 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:509918..511263 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO10G01830 vs. NCBI_GenBank
Match: EWM25396.1 (Protein of unknown function DUF2993 [Nannochloropsis gaditana])

HSP 1 Score: 498.0 bits (1281), Expect = 2.500e-137
Identity = 274/371 (73.85%), Postives = 311/371 (83.83%), Query Frame = 0
Query:    7 MLLCLVLRPAVSVAFVPASXXXXSLASVAAVDRLTTSTSTLVQSSTLFQSKRRRLFAASTLPQDRQQRRGRQAEDWEQGKDEQGIQETEKRERKPILSTLVGMLASKLLRKTARRVSGLDIDVGARSNSDVLAGNLPLVKAKFNLIVLENLQISGGGRIEITGLNIRLLALLLARRLSLIRRPFEVWGQYVLTQQDVSASKLIRDMVQLLVNNVLRTLFPSLHLTFFDVSIDSVQISPLRKLAVYGTANIAESDAGMPFTLLTGVGLAGDGHIVYLDKPELVLNPQTTLPVKVPLGSIRAFDVDIGDNARIESLEIDDIRGVSVTARTLITPAPPFQVTDMGKRAAFMYDMGAFFSSFFGFTHFSDLDLNG 378
            M+LCL+L+PA+  AF  +     ++     +         +  +  + Q  R R   +STLPQDR +R+GR+   W + +      E    ERKPILST+V +LASKL+RKTARRV+GLD+DVGARSNSDVLAGNLPLVKAKF+ IVLENLQISGGGR+EITGLNIRLLALLLARRLSLIR+PFEV G+YVLTQQDVSASKLIRDMVQLLVNNVLRTLFPSLHLTFFDVSIDSV+ISP RKLAV+GTAN+AES +GMPFTLLTGVGLAGDGHIVYLD PELVLNP+  LPVKVPLGSIRAFDVDIGDNARIE LEID+ RGV+VTARTLITPAPPFQVTD+GKRAAF+YDMGAFFSSFFGFTHFSDL+L+G
Sbjct:    7 MVLCLLLQPALVEAFT-SRLSPLTIPDTVIMTSRQKPPPIMTPTKQISQHTRIRPLLSSTLPQDRPERQGRR---WRRSQIPGEAIEYSMSERKPILSTVVEVLASKLVRKTARRVTGLDVDVGARSNSDVLAGNLPLVKAKFSRIVLENLQISGGGRMEITGLNIRLLALLLARRLSLIRKPFEVCGEYVLTQQDVSASKLIRDMVQLLVNNVLRTLFPSLHLTFFDVSIDSVRISPRRKLAVHGTANVAESASGMPFTLLTGVGLAGDGHIVYLDDPELVLNPEAPLPVKVPLGSIRAFDVDIGDNARIERLEIDEARGVTVTARTLITPAPPFQVTDVGKRAAFLYDMGAFFSSFFGFTHFSDLNLDG 373          
BLAST of NO10G01830 vs. NCBI_GenBank
Match: CBJ27995.1 (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 129.0 bits (323), Expect = 3.100e-26
Identity = 82/217 (37.79%), Postives = 126/217 (58.06%), Query Frame = 0
Query:  152 IVLENLQISGGGRIEITGLNIRLLALLLARRLSLIRRPFEVWGQYVLTQQDVSASKLIRDMVQLLVNNVLRTLFPSLHLTFFDVSIDSVQISPLR-KLAVYGTANIAESDAGMPFTLLTGVGLAGDGHIVYLDKPELVLNPQTTLPVKVPLGSIRAFDVDIGDNARIESLEIDDIRG-VSVTARTLITPAPPFQVTDMGKRAAFMYDMGAFFSSFFG 367
            +++E L+ISGG R+ IT L+++++ LL  +R    ++PFE+ G YVLT +D+S S ++R +V  ++N+ LR L           SI   Q+   R +L + G   +A   A +PFT  T +G+ G GH+VYL   E V        + +PL  +  FDVD+G+ ARIES+ I  + G V++ AR +I+P PP  V  + KRAAF +D+    S  FG
Sbjct:  288 MLVEGLEISGGARMNITNLDLKVMTLLW-KRFGSFKKPFEIEGSYVLTSEDLSTSSMVRRLVTNMMNSTLRKLETLATEPLRKSSITITQVLAKRSRLVIEG--EMAYDSAKVPFTYRTSIGVKGKGHVVYLKDAE-VFWENVGGSLSLPLLPLETFDVDMGEGARIESIRI--VNGQVALKARVVISPFPPLLVASLRKRAAFRFDVAERLSVTFG 498          
BLAST of NO10G01830 vs. NCBI_GenBank
Match: CEL94518.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 119.0 bits (297), Expect = 3.200e-23
Identity = 88/272 (32.35%), Postives = 139/272 (51.10%), Query Frame = 0
Query:  104 STLVGMLASKLLRKTARRVSGLDIDVGARSNSDVLAGNLPLVKAKFNLIVLENLQISGGGRIEITGLNIRLLALLLARRLSLIRRPFEVWGQYVLTQQDVSASKLIRDMVQLLVNNVLRTL--------FPSLHLTFFDVSIDSVQISPLRKLAVYGTANIAESDAGMPFTLLTGVGLAGDGHIVYLDKPELVLNPQTTLPVKVPLGSIRAFDVDIGDNARIESLEIDDIRGVSVTARTLITPAPPFQVT--DMGKRAAFMYDMGAFFSSFF 366
            S LV  +A  ++++  R   GL I +      ++L G  PLV+ +F  +  + L ISGG  +EI  L IR  +LLL RR + +R PFE +G Y LT +D+  S  I  +++ L N +L  +         P L L    V+I+ V +   R L + G A+    +   PF + TGVG+  +GH+VYL    + L   T   V V +  + ++ +D+GDN  I++L +   + +++ AR  ++   PFQV       RAAF  D+    S FF
Sbjct:  250 SRLVQWIAVNIMQRCCRSAKGLTIQIDLLRRRNLLRGIFPLVRIRFRKLAFQALSISGGAEVEIRELAIRWGSLLL-RRQTFLRGPFETFGTYTLTSEDLEDSPFINRLLRQLANKLLSKMEGTWDGRNIPKLML----VTIEHVTVKDGR-LCITGIAHTV-LNTMTPFRIRTGVGVTSNGHVVYLRDTVVTLGVGTPWEVAVNV-RLESWTLDMGDNVEIDTLVLAKNK-ITLVARCQLSSVEPFQVVPPQSSDRAAFSIDLARLLSKFF 512          
BLAST of NO10G01830 vs. NCBI_GenBank
Match: CBN76600.1 (hypothetical protein Esi_0000_0316 [Ectocarpus siliculosus])

HSP 1 Score: 85.9 bits (211), Expect = 3.000e-13
Identity = 84/315 (26.67%), Postives = 130/315 (41.27%), Query Frame = 0
Query:   99 RKPILSTLVGMLASKLLRKTARRVSGLDIDVGARSNSDVLAGNLPLVKAKFNLIVLENLQISGGGRIEITGLNIRLLALLLA--RRLSLIRRPFEVWGQYVLTQQDVSASKLIRDMVQLLVNNVLRTLFPSLHLTFF-----------------------------------------------DVSIDSVQISPLRKLAVYGTANIAESDAGMPFTLLTGVGLAGDGHIVYLDKPELVLNPQTTLPVKVPLGSIRAFDVDIGDNARIESLEIDDIRGV-SVTARTLITPAPPFQVTDMG-KRAAFMYDMGAFFS 363
            R+P  S        + +  TA+  + L+++V AR+N D + G    +   F   + E++Q+SGG   E+ G+++  L LL    RRL  +RRP E  G+   T  DV+ S  IR + Q +VN+ LR                                                           VS+  V++    KLA+ G      +   +PF     +  + DGH++Y  K   V        V +P+  +++F +D+GD ARIE L I   RGV S+  R ++T  P F V   G KR    YD+    S
Sbjct:   17 RRPFTSHAARWFIKRRILSTAKASAALNVEVEARNNRDAMRGRWESISIDFAKTIFEDIQVSGGA-FELLGVDVLTLGLLPGPWRRLRRLRRPCEAIGRSTFTDVDVAYSPAIRRLAQRVVNHALRPRAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEPSVSVLGVRVHG-NKLAIEGEMTNGGTFLRVPFRYHFSLSASADGHVLYF-KGSSVYWGTPGGHVPLPMMPLQSFKIDLGDRARIEHLRIS--RGVLSLGGRFILTNTPGFTVALPGLKRGDINYDLAESLS 326          
The following BLAST results are available for this feature:
BLAST of NO10G01830 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
EWM25396.12.500e-13773.85Protein of unknown function DUF2993 [Nannochlorops... [more]
CBJ27995.13.100e-2637.79expressed unknown protein [Ectocarpus siliculosus][more]
CEL94518.13.200e-2332.35unnamed protein product [Vitrella brassicaformis C... [more]
CBN76600.13.000e-1326.67hypothetical protein Esi_0000_0316 [Ectocarpus sil... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001053NSK001053Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G01830.1NO10G01830.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|422797gene_4032Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100005g72gene5100Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G01830.1NO10G01830.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G01830 ID=NO10G01830|Name=NO10G01830|organism=Nannochloropsis oceanica|type=gene|length=1346bp
ATGCAGAAACCGCTGTGCATGTTGCTGTGTCTGGTGTTGCGGCCAGCCGT
GTCAGTGGCGTTTGTGCCCGCCTCAATACCAGCCTCATCCCTCGCTTCGG
TTGCAGCCGTCGACCGGCTAACTACGTCGACGTCCACATTGGTGCAAAGT
TCAACGCTTTTCCAGTCCAAAAGGAGAAGACTATTCGCTGCCAGTACATT
GCCACAAGATCGCCAACAGCGGCGGGGTCGGCAGGCGGAGGACTGGGAGC
AGGGGAAGGACGAGCAAGGGATTCAGGAGACGGAGAAACGCGAACGAAAG
CCGATCTTGTCTACATTGGTAGGAATGCTGGCTTCCAAGCTGCTCCGTAA
GACAGCACGACGGGTGTCAGGCCTGGATATTGATGTGGGCGCCCGCTCCA
ACTCGGATGTGCTGGCAGGGAATTTGCCGCTTGTCAAGgtacgaaagatt
tgtgtatggattggtacgggtgactgatgatggcgatataagggatatga
agggataatggtgtaattctcgcgttttgataacaaatataaaataaatg
aagacacgtgcttcatttttctttttgtcaatccatatttcctcttggcc
aaatttcatctcttcctttcctttctccttcctctcagGCCAAGTTCAAC
CTCATCGTCCTCGAGAACCTACAAATTAGTGGCGGAGGCCGCATTGAGAT
TACCGGTCTCAATATCCGGCTATTGGCCCTGCTTCTCGCCCGGCGCCTGT
CATTGATCCGCCGCCCCTTCGAAGTGTGGGGGCAGTACGTCCTGACGCAG
CAAGACGTCTCCGCCTCCAAGCTCATCCGCGACATGGTCCAACTCCTCGT
CAACAACGTCCTACGCACCCTCTTTCCCTCCCTGCACCTTACCTTCTTCG
ATGTGTCTATCGACTCGGTGCAGATATCCCCTTTGCGAAAGCTGGCCGTG
TATGGCACCGCCAACATCGCCGAGTCGGACGCCGGCATGCCCTTCACCCT
TCTGACCGGGGTGGGCCTGGCGGGCGACGGCCACATCGTCTACCTGGACA
AACCCGAGCTGGTATTGAATCCTCAGACGACTTTGCCAGTTAAGGTTCCG
CTGGGATCCATCCGGGCCTTTGACGTGGACATTGGCGACAACGCGCGGAT
TGAGAGCCTGGAGATTGATGATATTCGTGGGGTCTCAGTCACGGCTCGCA
CACTTATTACGCCTGCCCCACCCTTTCAAGTCACAGACATGGGAAAGCGA
GCTGCATTCATGTACGATATGGGCGCTTTCTTTAGCAGTTTCTTTGGGTT
TACCCATTTTTCTGATTTGGACTTGAATGGAGAAAGCAAGAGATGA
back to top

protein sequence of NO10G01830.1

>NO10G01830.1-protein ID=NO10G01830.1-protein|Name=NO10G01830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=382bp
MQKPLCMLLCLVLRPAVSVAFVPASIPASSLASVAAVDRLTTSTSTLVQS
STLFQSKRRRLFAASTLPQDRQQRRGRQAEDWEQGKDEQGIQETEKRERK
PILSTLVGMLASKLLRKTARRVSGLDIDVGARSNSDVLAGNLPLVKAKFN
LIVLENLQISGGGRIEITGLNIRLLALLLARRLSLIRRPFEVWGQYVLTQ
QDVSASKLIRDMVQLLVNNVLRTLFPSLHLTFFDVSIDSVQISPLRKLAV
YGTANIAESDAGMPFTLLTGVGLAGDGHIVYLDKPELVLNPQTTLPVKVP
LGSIRAFDVDIGDNARIESLEIDDIRGVSVTARTLITPAPPFQVTDMGKR
AAFMYDMGAFFSSFFGFTHFSDLDLNGESKR*
back to top
Synonyms
Publications