NO10G01830.1, NO10G01830.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G01830.1
Unique NameNO10G01830.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1146
Alignment locationchr10:509918..511263 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:509918..511263 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G01830.1 vs.
Match: EWM25396.1 (Protein of unknown function DUF2993 [Nannochloropsis gaditana])

HSP 1 Score: 499.6 bits (1285), Expect = 8.700e-138
Identity = 277/371 (74.66%), Postives = 312/371 (84.10%), Query Frame = 0 
Query:    7 MLLCLVLRPAVSVAFVPASIPASSLASVAAVDRLTTSTSTLVQSSTLFQSKRRRLFAASTLPQDRQQRRGRQAEDWEQGKDEQGIQETEKRERKPILSTLVGMLASKLLRKTARRVSGLDIDVGARSNSDVLAGNLPLVKAKFNLIVLENLQISGGGRIEITGLNIRLLALLLARRLSLIRRPFEVWGQYVLTQQDVSASKLIRDMVQLLVNNVLRTLFPSLHLTFFDVSIDSVQISPLRKLAVYGTANIAESDAGMPFTLLTGVGLAGDGHIVYLDKPELVLNPQTTLPVKVPLGSIRAFDVDIGDNARIESLEIDDIRGVSVTARTLITPAPPFQVTDMGKRAAFMYDMGAFFSSFFGFTHFSDLDLNG 378
            M+LCL+L+PA+  AF     P +   +V    R       +  +  + Q  R R   +STLPQDR +R+GR+   W + +      E    ERKPILST+V +LASKL+RKTARRV+GLD+DVGARSNSDVLAGNLPLVKAKF+ IVLENLQISGGGR+EITGLNIRLLALLLARRLSLIR+PFEV G+YVLTQQDVSASKLIRDMVQLLVNNVLRTLFPSLHLTFFDVSIDSV+ISP RKLAV+GTAN+AES +GMPFTLLTGVGLAGDGHIVYLD PELVLNP+  LPVKVPLGSIRAFDVDIGDNARIE LEID+ RGV+VTARTLITPAPPFQVTD+GKRAAF+YDMGAFFSSFFGFTHFSDL+L+G
Sbjct:    7 MVLCLLLQPALVEAFTSRLSPLTIPDTVIMTSR-QKPPPIMTPTKQISQHTRIRPLLSSTLPQDRPERQGRR---WRRSQIPGEAIEYSMSERKPILSTVVEVLASKLVRKTARRVTGLDVDVGARSNSDVLAGNLPLVKAKFSRIVLENLQISGGGRMEITGLNIRLLALLLARRLSLIRKPFEVCGEYVLTQQDVSASKLIRDMVQLLVNNVLRTLFPSLHLTFFDVSIDSVRISPRRKLAVHGTANVAESASGMPFTLLTGVGLAGDGHIVYLDDPELVLNPEAPLPVKVPLGSIRAFDVDIGDNARIERLEIDEARGVTVTARTLITPAPPFQVTDVGKRAAFLYDMGAFFSSFFGFTHFSDLNLDG 373
The following BLAST results are available for this feature:
BLAST of NO10G01830.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25396.18.700e-13874.66Protein of unknown function DUF2993 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G01830NO10G01830Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G01830.1NO10G01830.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G01830.1.cds1NO10G01830.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G01830.1.cds2NO10G01830.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G01830.1 ID=NO10G01830.1|Name=NO10G01830.1|organism=Nannochloropsis oceanica|type=mRNA|length=1146bp
ATGCAGAAACCGCTGTGCATGTTGCTGTGTCTGGTGTTGCGGCCAGCCGT
GTCAGTGGCGTTTGTGCCCGCCTCAATACCAGCCTCATCCCTCGCTTCGG
TTGCAGCCGTCGACCGGCTAACTACGTCGACGTCCACATTGGTGCAAAGT
TCAACGCTTTTCCAGTCCAAAAGGAGAAGACTATTCGCTGCCAGTACATT
GCCACAAGATCGCCAACAGCGGCGGGGTCGGCAGGCGGAGGACTGGGAGC
AGGGGAAGGACGAGCAAGGGATTCAGGAGACGGAGAAACGCGAACGAAAG
CCGATCTTGTCTACATTGGTAGGAATGCTGGCTTCCAAGCTGCTCCGTAA
GACAGCACGACGGGTGTCAGGCCTGGATATTGATGTGGGCGCCCGCTCCA
ACTCGGATGTGCTGGCAGGGAATTTGCCGCTTGTCAAGGCCAAGTTCAAC
CTCATCGTCCTCGAGAACCTACAAATTAGTGGCGGAGGCCGCATTGAGAT
TACCGGTCTCAATATCCGGCTATTGGCCCTGCTTCTCGCCCGGCGCCTGT
CATTGATCCGCCGCCCCTTCGAAGTGTGGGGGCAGTACGTCCTGACGCAG
CAAGACGTCTCCGCCTCCAAGCTCATCCGCGACATGGTCCAACTCCTCGT
CAACAACGTCCTACGCACCCTCTTTCCCTCCCTGCACCTTACCTTCTTCG
ATGTGTCTATCGACTCGGTGCAGATATCCCCTTTGCGAAAGCTGGCCGTG
TATGGCACCGCCAACATCGCCGAGTCGGACGCCGGCATGCCCTTCACCCT
TCTGACCGGGGTGGGCCTGGCGGGCGACGGCCACATCGTCTACCTGGACA
AACCCGAGCTGGTATTGAATCCTCAGACGACTTTGCCAGTTAAGGTTCCG
CTGGGATCCATCCGGGCCTTTGACGTGGACATTGGCGACAACGCGCGGAT
TGAGAGCCTGGAGATTGATGATATTCGTGGGGTCTCAGTCACGGCTCGCA
CACTTATTACGCCTGCCCCACCCTTTCAAGTCACAGACATGGGAAAGCGA
GCTGCATTCATGTACGATATGGGCGCTTTCTTTAGCAGTTTCTTTGGGTT
TACCCATTTTTCTGATTTGGACTTGAATGGAGAAAGCAAGAGATGA
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protein sequence of NO10G01830.1

>NO10G01830.1-protein ID=NO10G01830.1-protein|Name=NO10G01830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=382bp
MQKPLCMLLCLVLRPAVSVAFVPASIPASSLASVAAVDRLTTSTSTLVQS
STLFQSKRRRLFAASTLPQDRQQRRGRQAEDWEQGKDEQGIQETEKRERK
PILSTLVGMLASKLLRKTARRVSGLDIDVGARSNSDVLAGNLPLVKAKFN
LIVLENLQISGGGRIEITGLNIRLLALLLARRLSLIRRPFEVWGQYVLTQ
QDVSASKLIRDMVQLLVNNVLRTLFPSLHLTFFDVSIDSVQISPLRKLAV
YGTANIAESDAGMPFTLLTGVGLAGDGHIVYLDKPELVLNPQTTLPVKVP
LGSIRAFDVDIGDNARIESLEIDDIRGVSVTARTLITPAPPFQVTDMGKR
AAFMYDMGAFFSSFFGFTHFSDLDLNGESKR*
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mRNA from alignment at chr10:509918..511263+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G01830.1 ID=NO10G01830.1|Name=NO10G01830.1|organism=Nannochloropsis oceanica|type=mRNA|length=1346bp|location=Sequence derived from alignment at chr10:509918..511263+ (Nannochloropsis oceanica)
ATGCAGAAACCGCTGTGCATGTTGCTGTGTCTGGTGTTGCGGCCAGCCGT
GTCAGTGGCGTTTGTGCCCGCCTCAATACCAGCCTCATCCCTCGCTTCGG
TTGCAGCCGTCGACCGGCTAACTACGTCGACGTCCACATTGGTGCAAAGT
TCAACGCTTTTCCAGTCCAAAAGGAGAAGACTATTCGCTGCCAGTACATT
GCCACAAGATCGCCAACAGCGGCGGGGTCGGCAGGCGGAGGACTGGGAGC
AGGGGAAGGACGAGCAAGGGATTCAGGAGACGGAGAAACGCGAACGAAAG
CCGATCTTGTCTACATTGGTAGGAATGCTGGCTTCCAAGCTGCTCCGTAA
GACAGCACGACGGGTGTCAGGCCTGGATATTGATGTGGGCGCCCGCTCCA
ACTCGGATGTGCTGGCAGGGAATTTGCCGCTTGTCAAGGTACGAAAGATT
TGTGTATGGATTGGTACGGGTGACTGATGATGGCGATATAAGGGATATGA
AGGGATAATGGTGTAATTCTCGCGTTTTGATAACAAATATAAAATAAATG
AAGACACGTGCTTCATTTTTCTTTTTGTCAATCCATATTTCCTCTTGGCC
AAATTTCATCTCTTCCTTTCCTTTCTCCTTCCTCTCAGGCCAAGTTCAAC
CTCATCGTCCTCGAGAACCTACAAATTAGTGGCGGAGGCCGCATTGAGAT
TACCGGTCTCAATATCCGGCTATTGGCCCTGCTTCTCGCCCGGCGCCTGT
CATTGATCCGCCGCCCCTTCGAAGTGTGGGGGCAGTACGTCCTGACGCAG
CAAGACGTCTCCGCCTCCAAGCTCATCCGCGACATGGTCCAACTCCTCGT
CAACAACGTCCTACGCACCCTCTTTCCCTCCCTGCACCTTACCTTCTTCG
ATGTGTCTATCGACTCGGTGCAGATATCCCCTTTGCGAAAGCTGGCCGTG
TATGGCACCGCCAACATCGCCGAGTCGGACGCCGGCATGCCCTTCACCCT
TCTGACCGGGGTGGGCCTGGCGGGCGACGGCCACATCGTCTACCTGGACA
AACCCGAGCTGGTATTGAATCCTCAGACGACTTTGCCAGTTAAGGTTCCG
CTGGGATCCATCCGGGCCTTTGACGTGGACATTGGCGACAACGCGCGGAT
TGAGAGCCTGGAGATTGATGATATTCGTGGGGTCTCAGTCACGGCTCGCA
CACTTATTACGCCTGCCCCACCCTTTCAAGTCACAGACATGGGAAAGCGA
GCTGCATTCATGTACGATATGGGCGCTTTCTTTAGCAGTTTCTTTGGGTT
TACCCATTTTTCTGATTTGGACTTGAATGGAGAAAGCAAGAGATGA
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Coding sequence (CDS) from alignment at chr10:509918..511263+

>NO10G01830.1 ID=NO10G01830.1|Name=NO10G01830.1|organism=Nannochloropsis oceanica|type=CDS|length=1146bp|location=Sequence derived from alignment at chr10:509918..511263+ (Nannochloropsis oceanica)
ATGCAGAAACCGCTGTGCATGTTGCTGTGTCTGGTGTTGCGGCCAGCCGT
GTCAGTGGCGTTTGTGCCCGCCTCAATACCAGCCTCATCCCTCGCTTCGG
TTGCAGCCGTCGACCGGCTAACTACGTCGACGTCCACATTGGTGCAAAGT
TCAACGCTTTTCCAGTCCAAAAGGAGAAGACTATTCGCTGCCAGTACATT
GCCACAAGATCGCCAACAGCGGCGGGGTCGGCAGGCGGAGGACTGGGAGC
AGGGGAAGGACGAGCAAGGGATTCAGGAGACGGAGAAACGCGAACGAAAG
CCGATCTTGTCTACATTGGTAGGAATGCTGGCTTCCAAGCTGCTCCGTAA
GACAGCACGACGGGTGTCAGGCCTGGATATTGATGTGGGCGCCCGCTCCA
ACTCGGATGTGCTGGCAGGGAATTTGCCGCTTGTCAAGGCCAAGTTCAAC
CTCATCGTCCTCGAGAACCTACAAATTAGTGGCGGAGGCCGCATTGAGAT
TACCGGTCTCAATATCCGGCTATTGGCCCTGCTTCTCGCCCGGCGCCTGT
CATTGATCCGCCGCCCCTTCGAAGTGTGGGGGCAGTACGTCCTGACGCAG
CAAGACGTCTCCGCCTCCAAGCTCATCCGCGACATGGTCCAACTCCTCGT
CAACAACGTCCTACGCACCCTCTTTCCCTCCCTGCACCTTACCTTCTTCG
ATGTGTCTATCGACTCGGTGCAGATATCCCCTTTGCGAAAGCTGGCCGTG
TATGGCACCGCCAACATCGCCGAGTCGGACGCCGGCATGCCCTTCACCCT
TCTGACCGGGGTGGGCCTGGCGGGCGACGGCCACATCGTCTACCTGGACA
AACCCGAGCTGGTATTGAATCCTCAGACGACTTTGCCAGTTAAGGTTCCG
CTGGGATCCATCCGGGCCTTTGACGTGGACATTGGCGACAACGCGCGGAT
TGAGAGCCTGGAGATTGATGATATTCGTGGGGTCTCAGTCACGGCTCGCA
CACTTATTACGCCTGCCCCACCCTTTCAAGTCACAGACATGGGAAAGCGA
GCTGCATTCATGTACGATATGGGCGCTTTCTTTAGCAGTTTCTTTGGGTT
TACCCATTTTTCTGATTTGGACTTGAATGGAGAAAGCAAGAGATGA
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Synonyms
Publications