NO10G01750, NO10G01750 (gene) Nannochloropsis oceanica

Overview
NameNO10G01750
Unique NameNO10G01750
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1532
Alignment locationchr10:486675..488206 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:486675..488206 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO10G01750 vs. NCBI_GenBank
Match: EWM25425.1 (hypothetical protein Naga_100005g79 [Nannochloropsis gaditana])

HSP 1 Score: 232.3 bits (591), Expect = 1.600e-57
Identity = 120/195 (61.54%), Postives = 145/195 (74.36%), Query Frame = 0 
Query:    9 TTEAGRRLRDMLQVLEKRAPYLRPNLIPKSCKPFMDLAAMCSTEAQRQAVQRVLAXXXXXXXXXXXXXXXXXXVEGGQRLAIQVHVSVDSGACNIFAVKYLSEVEADLYCVETILNMHSRGDNDELRLRLEHFLSVNGHDSG--DIADAQEIYSLAYAIIICLSAAPFKVTVGSQGLQLPLDSTVDAGAVIEMLF 202
            TTEAGRRLRDM+QV  K+AP LRPNL+PKSCKPFMD+ AMCST +QR  VQR+L                    +  + L ++ +V++D G CNI+A  Y+S+VEADLY  E+ILNMHSRGDNDELR+RLE+FLSVNG+D G  D+ +AQE+YSLAYAIIICLSAAPF+ TVG +GL LPL   VDAGAVI  LF
Sbjct:    6 TTEAGRRLRDMMQVFYKKAPRLRPNLVPKSCKPFMDVMAMCSTGSQRDNVQRILEQQKSKLVRRAIGADG----DEDRHLTLKANVNLDKGTCNIYAATYVSQVEADLYSTESILNMHSRGDNDELRIRLEYFLSVNGYDGGKADMIEAQEVYSLAYAIIICLSAAPFRATVGPKGLALPLSGEVDAGAVILALF 196
The following BLAST results are available for this feature:
BLAST of NO10G01750 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25425.11.600e-5761.54hypothetical protein Naga_100005g79 [Nannochlorops... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001046NSK001046Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G01750.1NO10G01750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|422887gene_4039Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100005g79gene5106Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G01750.1NO10G01750.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G01750 ID=NO10G01750|Name=NO10G01750|organism=Nannochloropsis oceanica|type=gene|length=1532bp
ATGGCTGCAATCACTGCCACGGTGACGACAGAAGCCGGGCGGCGCTTGCG
GGACATGCTGCAAGTGCTGGAAAAGgtaagaacacaacgataaagaggga
ggtttgaggagaagaggaatatcccgcggggttgggaggtctaggggatg
tttgggaaggtggaggacgggcacatgtgtcagagcctcacaaacctcgc
aatggctcaagtgcataagacctaagtaaccggcttacggggatgttctt
ctctgcacggtacagtatcggcctgtttctgcatgcctcataaaaagccc
tccccgacggtagactcaatagagcaaacaaggcaagatagggctaaggg
tagcccacatgttcgacctcgccattctcacacgctttcccacacctcca
tcattagCGGGCACCCTATTTGCGTCCGAATCTGATCCCCAAAAGCTGCA
AGCCTTTCATGGACTTGGCGGCCATGTGCAGCACAGAGGCACAGCGGCAG
GCTGTGCAGCGTGTGCTGGCGCAGCAACGACGGAAAGCGgtaggtcctga
ttatattggattttaagatataaagaggggtatctcataagtgctattcg
atcgccggacttacttagGGCGGAGCGGCAGGTGAAGAGGGGGGGAAGGA
GGAGGTAGAGGGGGGCCAACGGCTAGCAATACAAGTGCACGTGAGCGTGG
ACAGTGGCGCCTGCAATATTTTCGCGGTCAAGgtaatgattgagtcttac
atgagaggagaagttccggtctttgcgttccctcttggagcgtttaatac
accatccttaacgactcgcgatccccctccaatttctccgacagTATTTG
AGCGAGGTCGAGGCAGACCTCTACTGTGTAGAAACGATTTTGAATATGCA
CAGCCGCGGCGACAATGACGAGgtaagcgatggcttttgcccaatgacga
tgttgcgctcttttatcgcacttttcgttcctcaagtgagaacacttctc
gggtcaaatgttttttttaatgcaacggatcctcgttcccaaagcaccct
ttccgttccattcctcaagcaccttttccagctctccagactcattgcga
tcatagtcaaattctcatggcataaatactctttcttatgacagTTGCGC
CTTCGCTTGGAGCACTTTCTGTCTGTCAATGGCCACGACAGTGGCGACAT
AGCCGACGCGCAGGAGATATACAGTCTAGCCTACGCCATAATCATATGCC
TAAGgtgagttttctggatgtagtcttcttcttgtcagactcatttcgat
tatgccgaaagcaacctgatgtgcaatttcaatcacaacctctttatgca
gTGCTGCACCATTTAAGGTCACGGTTGGTAGCCAGGGCTTGCAGCTACCG
CTTGACAGTACAGTGGATGCGGGAGCCGTTATCGAGATGTTATTTGAACA
TGGGAAACCGTGCGAATATGCATCGATAATGCCTAAGACAAGTGACATGA
AGCAACGGAAAATGAAAAAGAATAAAAAGTGA
back to top

protein sequence of NO10G01750.1

>NO10G01750.1-protein ID=NO10G01750.1-protein|Name=NO10G01750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=230bp
MAAITATVTTEAGRRLRDMLQVLEKRAPYLRPNLIPKSCKPFMDLAAMCS
TEAQRQAVQRVLAQQRRKAGGAAGEEGGKEEVEGGQRLAIQVHVSVDSGA
CNIFAVKYLSEVEADLYCVETILNMHSRGDNDELRLRLEHFLSVNGHDSG
DIADAQEIYSLAYAIIICLSAAPFKVTVGSQGLQLPLDSTVDAGAVIEML
FEHGKPCEYASIMPKTSDMKQRKMKKNKK*
back to top
Synonyms
Publications