NO10G01750.1, NO10G01750.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G01750.1
Unique NameNO10G01750.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length690
Alignment locationchr10:486675..488206 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:486675..488206 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G01750.1 vs.
Match: EWM25425.1 (hypothetical protein Naga_100005g79 [Nannochloropsis gaditana])

HSP 1 Score: 242.3 bits (617), Expect = 1.500e-60
Identity = 128/199 (64.32%), Postives = 155/199 (77.89%), Query Frame = 0 
Query:    9 TTEAGRRLRDMLQVLEKRAPYLRPNLIPKSCKPFMDLAAMCSTEAQRQAVQRVLAQQR----RKAGGAAGEEGGKEEVEGGQRLAIQVHVSVDSGACNIFAVKYLSEVEADLYCVETILNMHSRGDNDELRLRLEHFLSVNGHDSG--DIADAQEIYSLAYAIIICLSAAPFKVTVGSQGLQLPLDSTVDAGAVIEMLF 202
            TTEAGRRLRDM+QV  K+AP LRPNL+PKSCKPFMD+ AMCST +QR  VQR+L QQ+    R+A GA G+E         + L ++ +V++D G CNI+A  Y+S+VEADLY  E+ILNMHSRGDNDELR+RLE+FLSVNG+D G  D+ +AQE+YSLAYAIIICLSAAPF+ TVG +GL LPL   VDAGAVI  LF
Sbjct:    6 TTEAGRRLRDMMQVFYKKAPRLRPNLVPKSCKPFMDVMAMCSTGSQRDNVQRILEQQKSKLVRRAIGADGDED--------RHLTLKANVNLDKGTCNIYAATYVSQVEADLYSTESILNMHSRGDNDELRIRLEYFLSVNGYDGGKADMIEAQEVYSLAYAIIICLSAAPFRATVGPKGLALPLSGEVDAGAVILALF 196
The following BLAST results are available for this feature:
BLAST of NO10G01750.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25425.11.500e-6064.32hypothetical protein Naga_100005g79 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G01750NO10G01750Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G01750.1NO10G01750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G01750.1.cds1NO10G01750.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G01750.1.cds2NO10G01750.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G01750.1.cds3NO10G01750.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G01750.1.cds4NO10G01750.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G01750.1.cds5NO10G01750.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G01750.1.cds6NO10G01750.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G01750.1 ID=NO10G01750.1|Name=NO10G01750.1|organism=Nannochloropsis oceanica|type=mRNA|length=690bp
ATGGCTGCAATCACTGCCACGGTGACGACAGAAGCCGGGCGGCGCTTGCG
GGACATGCTGCAAGTGCTGGAAAAGCGGGCACCCTATTTGCGTCCGAATC
TGATCCCCAAAAGCTGCAAGCCTTTCATGGACTTGGCGGCCATGTGCAGC
ACAGAGGCACAGCGGCAGGCTGTGCAGCGTGTGCTGGCGCAGCAACGACG
GAAAGCGGGCGGAGCGGCAGGTGAAGAGGGGGGGAAGGAGGAGGTAGAGG
GGGGCCAACGGCTAGCAATACAAGTGCACGTGAGCGTGGACAGTGGCGCC
TGCAATATTTTCGCGGTCAAGTATTTGAGCGAGGTCGAGGCAGACCTCTA
CTGTGTAGAAACGATTTTGAATATGCACAGCCGCGGCGACAATGACGAGT
TGCGCCTTCGCTTGGAGCACTTTCTGTCTGTCAATGGCCACGACAGTGGC
GACATAGCCGACGCGCAGGAGATATACAGTCTAGCCTACGCCATAATCAT
ATGCCTAAGTGCTGCACCATTTAAGGTCACGGTTGGTAGCCAGGGCTTGC
AGCTACCGCTTGACAGTACAGTGGATGCGGGAGCCGTTATCGAGATGTTA
TTTGAACATGGGAAACCGTGCGAATATGCATCGATAATGCCTAAGACAAG
TGACATGAAGCAACGGAAAATGAAAAAGAATAAAAAGTGA
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protein sequence of NO10G01750.1

>NO10G01750.1-protein ID=NO10G01750.1-protein|Name=NO10G01750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=230bp
MAAITATVTTEAGRRLRDMLQVLEKRAPYLRPNLIPKSCKPFMDLAAMCS
TEAQRQAVQRVLAQQRRKAGGAAGEEGGKEEVEGGQRLAIQVHVSVDSGA
CNIFAVKYLSEVEADLYCVETILNMHSRGDNDELRLRLEHFLSVNGHDSG
DIADAQEIYSLAYAIIICLSAAPFKVTVGSQGLQLPLDSTVDAGAVIEML
FEHGKPCEYASIMPKTSDMKQRKMKKNKK*
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mRNA from alignment at chr10:486675..488206+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G01750.1 ID=NO10G01750.1|Name=NO10G01750.1|organism=Nannochloropsis oceanica|type=mRNA|length=1532bp|location=Sequence derived from alignment at chr10:486675..488206+ (Nannochloropsis oceanica)
ATGGCTGCAATCACTGCCACGGTGACGACAGAAGCCGGGCGGCGCTTGCG
GGACATGCTGCAAGTGCTGGAAAAGGTAAGAACACAACGATAAAGAGGGA
GGTTTGAGGAGAAGAGGAATATCCCGCGGGGTTGGGAGGTCTAGGGGATG
TTTGGGAAGGTGGAGGACGGGCACATGTGTCAGAGCCTCACAAACCTCGC
AATGGCTCAAGTGCATAAGACCTAAGTAACCGGCTTACGGGGATGTTCTT
CTCTGCACGGTACAGTATCGGCCTGTTTCTGCATGCCTCATAAAAAGCCC
TCCCCGACGGTAGACTCAATAGAGCAAACAAGGCAAGATAGGGCTAAGGG
TAGCCCACATGTTCGACCTCGCCATTCTCACACGCTTTCCCACACCTCCA
TCATTAGCGGGCACCCTATTTGCGTCCGAATCTGATCCCCAAAAGCTGCA
AGCCTTTCATGGACTTGGCGGCCATGTGCAGCACAGAGGCACAGCGGCAG
GCTGTGCAGCGTGTGCTGGCGCAGCAACGACGGAAAGCGGTAGGTCCTGA
TTATATTGGATTTTAAGATATAAAGAGGGGTATCTCATAAGTGCTATTCG
ATCGCCGGACTTACTTAGGGCGGAGCGGCAGGTGAAGAGGGGGGGAAGGA
GGAGGTAGAGGGGGGCCAACGGCTAGCAATACAAGTGCACGTGAGCGTGG
ACAGTGGCGCCTGCAATATTTTCGCGGTCAAGGTAATGATTGAGTCTTAC
ATGAGAGGAGAAGTTCCGGTCTTTGCGTTCCCTCTTGGAGCGTTTAATAC
ACCATCCTTAACGACTCGCGATCCCCCTCCAATTTCTCCGACAGTATTTG
AGCGAGGTCGAGGCAGACCTCTACTGTGTAGAAACGATTTTGAATATGCA
CAGCCGCGGCGACAATGACGAGGTAAGCGATGGCTTTTGCCCAATGACGA
TGTTGCGCTCTTTTATCGCACTTTTCGTTCCTCAAGTGAGAACACTTCTC
GGGTCAAATGTTTTTTTTAATGCAACGGATCCTCGTTCCCAAAGCACCCT
TTCCGTTCCATTCCTCAAGCACCTTTTCCAGCTCTCCAGACTCATTGCGA
TCATAGTCAAATTCTCATGGCATAAATACTCTTTCTTATGACAGTTGCGC
CTTCGCTTGGAGCACTTTCTGTCTGTCAATGGCCACGACAGTGGCGACAT
AGCCGACGCGCAGGAGATATACAGTCTAGCCTACGCCATAATCATATGCC
TAAGGTGAGTTTTCTGGATGTAGTCTTCTTCTTGTCAGACTCATTTCGAT
TATGCCGAAAGCAACCTGATGTGCAATTTCAATCACAACCTCTTTATGCA
GTGCTGCACCATTTAAGGTCACGGTTGGTAGCCAGGGCTTGCAGCTACCG
CTTGACAGTACAGTGGATGCGGGAGCCGTTATCGAGATGTTATTTGAACA
TGGGAAACCGTGCGAATATGCATCGATAATGCCTAAGACAAGTGACATGA
AGCAACGGAAAATGAAAAAGAATAAAAAGTGA
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Coding sequence (CDS) from alignment at chr10:486675..488206+

>NO10G01750.1 ID=NO10G01750.1|Name=NO10G01750.1|organism=Nannochloropsis oceanica|type=CDS|length=690bp|location=Sequence derived from alignment at chr10:486675..488206+ (Nannochloropsis oceanica)
ATGGCTGCAATCACTGCCACGGTGACGACAGAAGCCGGGCGGCGCTTGCG
GGACATGCTGCAAGTGCTGGAAAAGCGGGCACCCTATTTGCGTCCGAATC
TGATCCCCAAAAGCTGCAAGCCTTTCATGGACTTGGCGGCCATGTGCAGC
ACAGAGGCACAGCGGCAGGCTGTGCAGCGTGTGCTGGCGCAGCAACGACG
GAAAGCGGGCGGAGCGGCAGGTGAAGAGGGGGGGAAGGAGGAGGTAGAGG
GGGGCCAACGGCTAGCAATACAAGTGCACGTGAGCGTGGACAGTGGCGCC
TGCAATATTTTCGCGGTCAAGTATTTGAGCGAGGTCGAGGCAGACCTCTA
CTGTGTAGAAACGATTTTGAATATGCACAGCCGCGGCGACAATGACGAGT
TGCGCCTTCGCTTGGAGCACTTTCTGTCTGTCAATGGCCACGACAGTGGC
GACATAGCCGACGCGCAGGAGATATACAGTCTAGCCTACGCCATAATCAT
ATGCCTAAGTGCTGCACCATTTAAGGTCACGGTTGGTAGCCAGGGCTTGC
AGCTACCGCTTGACAGTACAGTGGATGCGGGAGCCGTTATCGAGATGTTA
TTTGAACATGGGAAACCGTGCGAATATGCATCGATAATGCCTAAGACAAG
TGACATGAAGCAACGGAAAATGAAAAAGAATAAAAAGTGA
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Synonyms
Publications