NO10G01640, NO10G01640 (gene) Nannochloropsis oceanica

Overview
NameNO10G01640
Unique NameNO10G01640
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1776
Alignment locationchr10:464733..466508 +

Link to JBrowse

Properties
Property NameValue
DescriptionAnkyrin unc44
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:464733..466508 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036770Ankyrin_rpt-contain_sf
IPR020683Ankyrin_rpt-contain_dom
IPR002110Ankyrin_rpt
Homology
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BLAST of NO10G01640 vs. NCBI_GenBank
Match: EWM25377.1 (ankyrin unc44 [Nannochloropsis gaditana])

HSP 1 Score: 248.1 bits (632), Expect = 7.000e-62
Identity = 200/296 (67.57%), Postives = 221/296 (74.66%), Query Frame = 0 
Query:    1 MPQAVKALCRAARQGDVTRVDMILRQVPDVVNERNRDGRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTTEATDCGTPLMVACQYGHIECVRLLLDQAPTAAV-ISGMDESLAAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFAQSNYQCTALWWACRSDREEVVRLLLARGADFTRRDWKGRTPLDIARVKNHHGCHSALEEAHRALALYKYRLLYDAEQCLVRLPLSRTRRGTLHSRASHVPACLRERLVR 296
            MP AVKALCRAARQGDV R  +IL Q P+ +NERN DGR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  TEATDCGTPLMVA QYGH+EC R+LLDQ P AA  ++    S A++V                                       +AQSNY+CTALWWACRSDRE+VVRLLL+RGADFT RDWKGRTPL+IA  KNH GC  A++EA+RALAL+KYR L+DAEQCL+RLPLSRTR  TL +R S VPACLR RL R
Sbjct:    1 MPHAVKALCRAARQGDVARTVLILEQFPETLNERNPDGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEATDCGTPLMVASQYGHLECARVLLDQGPCAAKRVAPQAASDASSV---------------LKPPAQARAAPASRPHPPWTLDIDYAQSNYKCTALWWACRSDREDVVRLLLSRGADFTLRDWKGRTPLEIALAKNHPGCVLAVQEAYRALALFKYRTLHDAEQCLLRLPLSRTRGSTLQTRVSCVPACLRARLFR 281
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BLAST of NO10G01640 vs. NCBI_GenBank
Match: XP_005854114.1 (ankyrin [Nannochloropsis gaditana CCMP526] >EKU22249.1 ankyrin [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 73.6 bits (179), Expect = 2.400e-9
Identity = 43/106 (40.57%), Postives = 56/106 (52.83%), Query Frame = 0 
Query:  187 QSNYQCTALWWACRSDREEVVRLLLARGADFTRRDWKGRTPLDIARVKNHHGCHSALEEAHRALALYKYRLLYDAEQCLVRLPLSRTRRGTLHSRASHVPACLRER 293
            Q+   C+ LW+A    R  +VRLLL+RGADF + D  G T L +AR++ +  C   LEE  RA  LY+ R L+D    L  LP + TR      R    P  LR R
Sbjct:  154 QNKDGCSGLWFAAGHGRASMVRLLLSRGADFLQADCDGYTALHVARLRGYDDCALLLEETERAYWLYQARRLFDDTATLASLPRAGTRACFQRRRQQLTPNYLRIR 259
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BLAST of NO10G01640 vs. NCBI_GenBank
Match: EWM29414.1 (ankyrin unc44 [Nannochloropsis gaditana])

HSP 1 Score: 73.6 bits (179), Expect = 2.400e-9
Identity = 43/106 (40.57%), Postives = 56/106 (52.83%), Query Frame = 0 
Query:  187 QSNYQCTALWWACRSDREEVVRLLLARGADFTRRDWKGRTPLDIARVKNHHGCHSALEEAHRALALYKYRLLYDAEQCLVRLPLSRTRRGTLHSRASHVPACLRER 293
            Q+   C+ LW+A    R  +VRLLL+RGADF + D  G T L +AR++ +  C   LEE  RA  LY+ R L+D    L  LP + TR      R    P  LR R
Sbjct:  154 QNKDGCSGLWFAAGHGRASMVRLLLSRGADFLQADCDGYTALHVARLRGYDDCALLLEETERAYWLYQARRLFDDTATLASLPRAGTRACFQRRRQQLTPNYLRIR 259
The following BLAST results are available for this feature:
BLAST of NO10G01640 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM25377.17.000e-6267.57ankyrin unc44 [Nannochloropsis gaditana][more]
XP_005854114.12.400e-940.57ankyrin [Nannochloropsis gaditana CCMP526] >EKU222... [more]
EWM29414.12.400e-940.57ankyrin unc44 [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001035NSK001035Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G01640.1NO10G01640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|670249gene_4051Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100005g88gene5115Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G01640.1NO10G01640.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G01640 ID=NO10G01640|Name=NO10G01640|organism=Nannochloropsis oceanica|type=gene|length=1776bp
ATGCCTCAAGCAGTCAAGGCTTTGTGCCGAGCGGCACGCCAAGGCGACGT
GACCCGGGTGGATATGATTTTGCGGCAGGTCCCCGATGTGGTGAACGAAC
GAAATCGCGACGGCCGCTCGGCGCTCATCGTGGCAGTGCGACACGGGCAA
GCCGGCGTAGTTGAGCACTTGCTCAGGCATGGAGCGGAGGTAAATGGTGC
GTCACACCGCTCGGGTGCCACGCCGGTATGGCATTGTGCGTGGAAGGGGG
AACAGGCCATTTTGCGCCTCCTGTTGGAGAACGGTGGGGATCCGACAACG
GAAGCGACAGATTGCGGCACTCCTTTGATGGTGGCTTGTCAGTATGGCCA
TATCGAATGCGTGCGCCTCTTACTGGATCAGGCGCCGACTGCGGCTGTGA
TCAGTGGAATGGATGAAAGTCTTGCCGCTGCTGTTCCTGCTGCTGCTTCT
ACTGCCCGTGGCCCTGCCTCTCCAACCACTACCACCACAACAGCCGCTGT
TGAATCTTCTTCGAGTCCTCCTTCGCCCTCACCACTTCCCGTCGACATTG
ACTTTGCTCAGAGCAATTATCAATGCACTGCCTTGTGGTGGGCATGTCGT
TCGGATCGGGAGGAGGTGGTCCGTCTCTTGCTTGCGCGGGGGGCAGACTT
CACGAGAAGAGATTGGAAGGGTCGTACACCATTGGATATCGCCCGTGTGA
AAAACCATCACGGCTGCCATTCTGCTTTGGAAGAGGCCCATCGTGCTCTG
GCTCTATACAAATATCGGCTCTTGTATGATGCCGAGCAGTGTCTCGTGCG
GTTGCCCCTGTCCCGCACCCGTCGAGGGACATTGCACAGCCGCGCCTCGC
ACGTCCCTGCTTGCTTGCGTGAACGCTTGGTCCGCCAGCAGCACTTGCAG
CAACAGCAACAACAAGTGCGGCAATGGCAGCAGGGGAAAGAGGGTGAGAA
TGAGGGGTTTGAGGGGGAGGGAATGAAAGAGGGAGGGAAGAAAGTAGTAT
TTGATGCGATGTTAGGAGGAGGGGAAGCGGGGTATCTTCCTTGTGTGAAT
GTCAAACCTTTGAGAAAGGAGGAAGAGGATTACAAGGATGATGAGGAGAG
AGAGAGGGGGGGCAAGAAGGGGTGCGAAGGGAGGGGGCGGAAACGGCGAC
AGAAGAGAGGGAGGACGGGAGGGGAAGAAAATGGTGGTTCTGGGCGGCTT
CGATTGGAGCCTGGGAAAAAGCGCAAGCGCAACATGGGTGTGAACCATCC
TCATTTGGACCACATGCACCACCACAAGGGGGGATCAGCGGCAGCAGGAA
ACTTACGGGGCTTCGGTGGTGGTAGAGGGGGTCGCGGAGGAGAAGGCTCG
GGCGAGAACTCCCTATCAGCAGTGCTCTCCTCCGCTGATTTCACCTCCTC
CTCTTCCTCTTGCTCTTCTTCCCAAGACGAAAGCTCGACGCCTGTCCTTG
ATCACTTGCCTATGACCCGTCGTAGGGGCTCACCGATGTATTTCAAGAGG
CAGCAGCAGCAGCAACAACAAAAACAACAGCAGCAAGATGACGAAGAGTT
TGAGGACGAGAATGTTGTGCTGGAAGTTGACAAAGGCCAAGCGCAGAAGC
AGCCCTTGTTGTCCTCCTCGGTCAAAGTAACGACTGCAGCGAGAGTAGAA
CTCAAGCAGCAGCAGCGGCAGCAGCAGCGATCCTTCGACGAGGAAGCTAC
TGTTATGGTATCGCGATTCGTTTTGAATGATTTGCCCGAGGAATTGTTTG
TGGAGCTGATGTGTCTGATGCGATGA
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protein sequence of NO10G01640.1

>NO10G01640.1-protein ID=NO10G01640.1-protein|Name=NO10G01640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=592bp
MPQAVKALCRAARQGDVTRVDMILRQVPDVVNERNRDGRSALIVAVRHGQ
AGVVEHLLRHGAEVNGASHRSGATPVWHCAWKGEQAILRLLLENGGDPTT
EATDCGTPLMVACQYGHIECVRLLLDQAPTAAVISGMDESLAAAVPAAAS
TARGPASPTTTTTTAAVESSSSPPSPSPLPVDIDFAQSNYQCTALWWACR
SDREEVVRLLLARGADFTRRDWKGRTPLDIARVKNHHGCHSALEEAHRAL
ALYKYRLLYDAEQCLVRLPLSRTRRGTLHSRASHVPACLRERLVRQQHLQ
QQQQQVRQWQQGKEGENEGFEGEGMKEGGKKVVFDAMLGGGEAGYLPCVN
VKPLRKEEEDYKDDEERERGGKKGCEGRGRKRRQKRGRTGGEENGGSGRL
RLEPGKKRKRNMGVNHPHLDHMHHHKGGSAAAGNLRGFGGGRGGRGGEGS
GENSLSAVLSSADFTSSSSSCSSSQDESSTPVLDHLPMTRRRGSPMYFKR
QQQQQQQKQQQQDDEEFEDENVVLEVDKGQAQKQPLLSSSVKVTTAARVE
LKQQQRQQQRSFDEEATVMVSRFVLNDLPEELFVELMCLMR*
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Synonyms
Publications