NO10G01640.1, NO10G01640.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G01640.1
Unique NameNO10G01640.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1776
Alignment locationchr10:464733..466508 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:464733..466508 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G01640.1 vs.
Match: EWM25377.1 (ankyrin unc44 [Nannochloropsis gaditana])

HSP 1 Score: 395.6 bits (1015), Expect = 2.700e-106
Identity = 296/658 (44.98%), Postives = 364/658 (55.32%), Query Frame = 0 
Query:    1 MPQAVKALCRAARQGDVTRVDMILRQVPDVVNERNRDGRSALIVAVRHGQAGVVEHLLRHGAEVNGASHRSGATPVWHCAWKGEQAILRLLLENGGDPTTEATDCGTPLMVACQYGHIECVRLLLDQAPTAAVISGMDESLAAAVPAAASTARGPASPTTTTTTAAVESSSSPPSPSPLPVDIDFAQSNYQCTALWWACRSDREEVVRLLLARGADFTRRDWKGRTPLDIARVKNHHGCHSALEEAHRALALYKYRLLYDAEQCLVRLPLSRTRRGTLHSRASHVPACLRERLVR---------------------QQHLQQQQQQVRQWQQGKEGEN-----EG-------------FEGEGMKEGGKKVVFDAMLGGGEAGYLPCVNVKPLRKEE-----EDYKDDEERERGGKKGCEGRGRKRRQKRGRTGGEENGGSGRLRLEPGKKRKRNMGVNHPHLDHMHHHKG-GSAAAGNLRGFGGGRGGRGGEGSG--ENSLSAVLSSADFT----SSSSSCSSSQDESSTPVLD----------------HLPMTRRRGSPMYFKRQQQQQQQKQQQQDDEEFEDENVVLEVDKGQAQKQPLLSSSVKVTTAARVELKQQQRQQQRSFDEEATVMVSRFVLNDLPEELFVELMCLMR 592
            MP AVKALCRAARQGDV R  +IL Q P+ +NERN DGR+ALIVAVRHGQ  +VE LLR GA+VN ASHRSGATPVWHCAWKGE+AILRLLL++G DP+TEATDCGTPLMVA QYGH+EC R+LLDQ P AA             P AAS A     P      A     +S P P P  +DID+AQSNY+CTALWWACRSDRE+VVRLLL+RGADFT RDWKGRTPL+IA  KNH GC  A++EA+RALAL+KYR L+DAEQCL+RLPLSRTR  TL +R S VPACLR RL R                      QH+Q +  +  Q   GKE +      EG               GE  +E  + +++    GGG     P V+VK LR++       +  +D+E   G +   +  GR   ++               R E GKKR R   V+  H    HH  G  S          G      G  S    +S  A  SS  FT    SSSSSCSSS   SS+ V D                  P+ R+RG     KRQQ  Q ++ +++                            + + TA   E + ++ + +R+F EE T+MVS+FVL D+PE+LF+ELM LMR
Sbjct:    1 MPHAVKALCRAARQGDVARTVLILEQFPETLNERNPDGRTALIVAVRHGQLAIVELLLRRGAKVNRASHRSGATPVWHCAWKGEEAILRLLLKHGADPSTEATDCGTPLMVASQYGHLECARVLLDQGPCAA---------KRVAPQAASDASSVLKPPAQARAA----PASRPHP-PWTLDIDYAQSNYKCTALWWACRSDREDVVRLLLSRGADFTLRDWKGRTPLEIALAKNHPGCVLAVQEAYRALALFKYRTLHDAEQCLLRLPLSRTRGSTLQTRVSCVPACLRARLFRPPRRTQYEDLEQREQQELQLFMQHMQHRPPRPEQPPTGKEEDQPQKAVEGQVETRRDSDPKGVDRGEHPQEKKEGIIWGGAGGGGGGSGFPWVDVKALRQDRRIVGGRELVEDQESGLGRRSYSDAEGRDSMERM----------PSSKRPERGKKRSRR-AVDGQHQARGHHAYGLTSDEVARFEENLGEHNVAIGNSSALLVSSHPAPYSSCPFTSSPSSSSSSCSSSSSSSSSSVHDVSSSSLEDATPSDLAYRNPIVRKRGVSWKEKRQQGLQSRRGKRK--------------------------RGLSIPTA---ESRVERGRHERAFVEEITIMVSKFVLEDMPEQLFIELMALMR 604
The following BLAST results are available for this feature:
BLAST of NO10G01640.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25377.12.700e-10644.98ankyrin unc44 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G01640NO10G01640Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G01640.1NO10G01640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G01640.1.cds1NO10G01640.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G01640.1 ID=NO10G01640.1|Name=NO10G01640.1|organism=Nannochloropsis oceanica|type=mRNA|length=1776bp
ATGCCTCAAGCAGTCAAGGCTTTGTGCCGAGCGGCACGCCAAGGCGACGT
GACCCGGGTGGATATGATTTTGCGGCAGGTCCCCGATGTGGTGAACGAAC
GAAATCGCGACGGCCGCTCGGCGCTCATCGTGGCAGTGCGACACGGGCAA
GCCGGCGTAGTTGAGCACTTGCTCAGGCATGGAGCGGAGGTAAATGGTGC
GTCACACCGCTCGGGTGCCACGCCGGTATGGCATTGTGCGTGGAAGGGGG
AACAGGCCATTTTGCGCCTCCTGTTGGAGAACGGTGGGGATCCGACAACG
GAAGCGACAGATTGCGGCACTCCTTTGATGGTGGCTTGTCAGTATGGCCA
TATCGAATGCGTGCGCCTCTTACTGGATCAGGCGCCGACTGCGGCTGTGA
TCAGTGGAATGGATGAAAGTCTTGCCGCTGCTGTTCCTGCTGCTGCTTCT
ACTGCCCGTGGCCCTGCCTCTCCAACCACTACCACCACAACAGCCGCTGT
TGAATCTTCTTCGAGTCCTCCTTCGCCCTCACCACTTCCCGTCGACATTG
ACTTTGCTCAGAGCAATTATCAATGCACTGCCTTGTGGTGGGCATGTCGT
TCGGATCGGGAGGAGGTGGTCCGTCTCTTGCTTGCGCGGGGGGCAGACTT
CACGAGAAGAGATTGGAAGGGTCGTACACCATTGGATATCGCCCGTGTGA
AAAACCATCACGGCTGCCATTCTGCTTTGGAAGAGGCCCATCGTGCTCTG
GCTCTATACAAATATCGGCTCTTGTATGATGCCGAGCAGTGTCTCGTGCG
GTTGCCCCTGTCCCGCACCCGTCGAGGGACATTGCACAGCCGCGCCTCGC
ACGTCCCTGCTTGCTTGCGTGAACGCTTGGTCCGCCAGCAGCACTTGCAG
CAACAGCAACAACAAGTGCGGCAATGGCAGCAGGGGAAAGAGGGTGAGAA
TGAGGGGTTTGAGGGGGAGGGAATGAAAGAGGGAGGGAAGAAAGTAGTAT
TTGATGCGATGTTAGGAGGAGGGGAAGCGGGGTATCTTCCTTGTGTGAAT
GTCAAACCTTTGAGAAAGGAGGAAGAGGATTACAAGGATGATGAGGAGAG
AGAGAGGGGGGGCAAGAAGGGGTGCGAAGGGAGGGGGCGGAAACGGCGAC
AGAAGAGAGGGAGGACGGGAGGGGAAGAAAATGGTGGTTCTGGGCGGCTT
CGATTGGAGCCTGGGAAAAAGCGCAAGCGCAACATGGGTGTGAACCATCC
TCATTTGGACCACATGCACCACCACAAGGGGGGATCAGCGGCAGCAGGAA
ACTTACGGGGCTTCGGTGGTGGTAGAGGGGGTCGCGGAGGAGAAGGCTCG
GGCGAGAACTCCCTATCAGCAGTGCTCTCCTCCGCTGATTTCACCTCCTC
CTCTTCCTCTTGCTCTTCTTCCCAAGACGAAAGCTCGACGCCTGTCCTTG
ATCACTTGCCTATGACCCGTCGTAGGGGCTCACCGATGTATTTCAAGAGG
CAGCAGCAGCAGCAACAACAAAAACAACAGCAGCAAGATGACGAAGAGTT
TGAGGACGAGAATGTTGTGCTGGAAGTTGACAAAGGCCAAGCGCAGAAGC
AGCCCTTGTTGTCCTCCTCGGTCAAAGTAACGACTGCAGCGAGAGTAGAA
CTCAAGCAGCAGCAGCGGCAGCAGCAGCGATCCTTCGACGAGGAAGCTAC
TGTTATGGTATCGCGATTCGTTTTGAATGATTTGCCCGAGGAATTGTTTG
TGGAGCTGATGTGTCTGATGCGATGA
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protein sequence of NO10G01640.1

>NO10G01640.1-protein ID=NO10G01640.1-protein|Name=NO10G01640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=592bp
MPQAVKALCRAARQGDVTRVDMILRQVPDVVNERNRDGRSALIVAVRHGQ
AGVVEHLLRHGAEVNGASHRSGATPVWHCAWKGEQAILRLLLENGGDPTT
EATDCGTPLMVACQYGHIECVRLLLDQAPTAAVISGMDESLAAAVPAAAS
TARGPASPTTTTTTAAVESSSSPPSPSPLPVDIDFAQSNYQCTALWWACR
SDREEVVRLLLARGADFTRRDWKGRTPLDIARVKNHHGCHSALEEAHRAL
ALYKYRLLYDAEQCLVRLPLSRTRRGTLHSRASHVPACLRERLVRQQHLQ
QQQQQVRQWQQGKEGENEGFEGEGMKEGGKKVVFDAMLGGGEAGYLPCVN
VKPLRKEEEDYKDDEERERGGKKGCEGRGRKRRQKRGRTGGEENGGSGRL
RLEPGKKRKRNMGVNHPHLDHMHHHKGGSAAAGNLRGFGGGRGGRGGEGS
GENSLSAVLSSADFTSSSSSCSSSQDESSTPVLDHLPMTRRRGSPMYFKR
QQQQQQQKQQQQDDEEFEDENVVLEVDKGQAQKQPLLSSSVKVTTAARVE
LKQQQRQQQRSFDEEATVMVSRFVLNDLPEELFVELMCLMR*
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mRNA from alignment at chr10:464733..466508+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G01640.1 ID=NO10G01640.1|Name=NO10G01640.1|organism=Nannochloropsis oceanica|type=mRNA|length=1776bp|location=Sequence derived from alignment at chr10:464733..466508+ (Nannochloropsis oceanica)
ATGCCTCAAGCAGTCAAGGCTTTGTGCCGAGCGGCACGCCAAGGCGACGT
GACCCGGGTGGATATGATTTTGCGGCAGGTCCCCGATGTGGTGAACGAAC
GAAATCGCGACGGCCGCTCGGCGCTCATCGTGGCAGTGCGACACGGGCAA
GCCGGCGTAGTTGAGCACTTGCTCAGGCATGGAGCGGAGGTAAATGGTGC
GTCACACCGCTCGGGTGCCACGCCGGTATGGCATTGTGCGTGGAAGGGGG
AACAGGCCATTTTGCGCCTCCTGTTGGAGAACGGTGGGGATCCGACAACG
GAAGCGACAGATTGCGGCACTCCTTTGATGGTGGCTTGTCAGTATGGCCA
TATCGAATGCGTGCGCCTCTTACTGGATCAGGCGCCGACTGCGGCTGTGA
TCAGTGGAATGGATGAAAGTCTTGCCGCTGCTGTTCCTGCTGCTGCTTCT
ACTGCCCGTGGCCCTGCCTCTCCAACCACTACCACCACAACAGCCGCTGT
TGAATCTTCTTCGAGTCCTCCTTCGCCCTCACCACTTCCCGTCGACATTG
ACTTTGCTCAGAGCAATTATCAATGCACTGCCTTGTGGTGGGCATGTCGT
TCGGATCGGGAGGAGGTGGTCCGTCTCTTGCTTGCGCGGGGGGCAGACTT
CACGAGAAGAGATTGGAAGGGTCGTACACCATTGGATATCGCCCGTGTGA
AAAACCATCACGGCTGCCATTCTGCTTTGGAAGAGGCCCATCGTGCTCTG
GCTCTATACAAATATCGGCTCTTGTATGATGCCGAGCAGTGTCTCGTGCG
GTTGCCCCTGTCCCGCACCCGTCGAGGGACATTGCACAGCCGCGCCTCGC
ACGTCCCTGCTTGCTTGCGTGAACGCTTGGTCCGCCAGCAGCACTTGCAG
CAACAGCAACAACAAGTGCGGCAATGGCAGCAGGGGAAAGAGGGTGAGAA
TGAGGGGTTTGAGGGGGAGGGAATGAAAGAGGGAGGGAAGAAAGTAGTAT
TTGATGCGATGTTAGGAGGAGGGGAAGCGGGGTATCTTCCTTGTGTGAAT
GTCAAACCTTTGAGAAAGGAGGAAGAGGATTACAAGGATGATGAGGAGAG
AGAGAGGGGGGGCAAGAAGGGGTGCGAAGGGAGGGGGCGGAAACGGCGAC
AGAAGAGAGGGAGGACGGGAGGGGAAGAAAATGGTGGTTCTGGGCGGCTT
CGATTGGAGCCTGGGAAAAAGCGCAAGCGCAACATGGGTGTGAACCATCC
TCATTTGGACCACATGCACCACCACAAGGGGGGATCAGCGGCAGCAGGAA
ACTTACGGGGCTTCGGTGGTGGTAGAGGGGGTCGCGGAGGAGAAGGCTCG
GGCGAGAACTCCCTATCAGCAGTGCTCTCCTCCGCTGATTTCACCTCCTC
CTCTTCCTCTTGCTCTTCTTCCCAAGACGAAAGCTCGACGCCTGTCCTTG
ATCACTTGCCTATGACCCGTCGTAGGGGCTCACCGATGTATTTCAAGAGG
CAGCAGCAGCAGCAACAACAAAAACAACAGCAGCAAGATGACGAAGAGTT
TGAGGACGAGAATGTTGTGCTGGAAGTTGACAAAGGCCAAGCGCAGAAGC
AGCCCTTGTTGTCCTCCTCGGTCAAAGTAACGACTGCAGCGAGAGTAGAA
CTCAAGCAGCAGCAGCGGCAGCAGCAGCGATCCTTCGACGAGGAAGCTAC
TGTTATGGTATCGCGATTCGTTTTGAATGATTTGCCCGAGGAATTGTTTG
TGGAGCTGATGTGTCTGATGCGATGA
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Coding sequence (CDS) from alignment at chr10:464733..466508+

>NO10G01640.1 ID=NO10G01640.1|Name=NO10G01640.1|organism=Nannochloropsis oceanica|type=CDS|length=1776bp|location=Sequence derived from alignment at chr10:464733..466508+ (Nannochloropsis oceanica)
ATGCCTCAAGCAGTCAAGGCTTTGTGCCGAGCGGCACGCCAAGGCGACGT
GACCCGGGTGGATATGATTTTGCGGCAGGTCCCCGATGTGGTGAACGAAC
GAAATCGCGACGGCCGCTCGGCGCTCATCGTGGCAGTGCGACACGGGCAA
GCCGGCGTAGTTGAGCACTTGCTCAGGCATGGAGCGGAGGTAAATGGTGC
GTCACACCGCTCGGGTGCCACGCCGGTATGGCATTGTGCGTGGAAGGGGG
AACAGGCCATTTTGCGCCTCCTGTTGGAGAACGGTGGGGATCCGACAACG
GAAGCGACAGATTGCGGCACTCCTTTGATGGTGGCTTGTCAGTATGGCCA
TATCGAATGCGTGCGCCTCTTACTGGATCAGGCGCCGACTGCGGCTGTGA
TCAGTGGAATGGATGAAAGTCTTGCCGCTGCTGTTCCTGCTGCTGCTTCT
ACTGCCCGTGGCCCTGCCTCTCCAACCACTACCACCACAACAGCCGCTGT
TGAATCTTCTTCGAGTCCTCCTTCGCCCTCACCACTTCCCGTCGACATTG
ACTTTGCTCAGAGCAATTATCAATGCACTGCCTTGTGGTGGGCATGTCGT
TCGGATCGGGAGGAGGTGGTCCGTCTCTTGCTTGCGCGGGGGGCAGACTT
CACGAGAAGAGATTGGAAGGGTCGTACACCATTGGATATCGCCCGTGTGA
AAAACCATCACGGCTGCCATTCTGCTTTGGAAGAGGCCCATCGTGCTCTG
GCTCTATACAAATATCGGCTCTTGTATGATGCCGAGCAGTGTCTCGTGCG
GTTGCCCCTGTCCCGCACCCGTCGAGGGACATTGCACAGCCGCGCCTCGC
ACGTCCCTGCTTGCTTGCGTGAACGCTTGGTCCGCCAGCAGCACTTGCAG
CAACAGCAACAACAAGTGCGGCAATGGCAGCAGGGGAAAGAGGGTGAGAA
TGAGGGGTTTGAGGGGGAGGGAATGAAAGAGGGAGGGAAGAAAGTAGTAT
TTGATGCGATGTTAGGAGGAGGGGAAGCGGGGTATCTTCCTTGTGTGAAT
GTCAAACCTTTGAGAAAGGAGGAAGAGGATTACAAGGATGATGAGGAGAG
AGAGAGGGGGGGCAAGAAGGGGTGCGAAGGGAGGGGGCGGAAACGGCGAC
AGAAGAGAGGGAGGACGGGAGGGGAAGAAAATGGTGGTTCTGGGCGGCTT
CGATTGGAGCCTGGGAAAAAGCGCAAGCGCAACATGGGTGTGAACCATCC
TCATTTGGACCACATGCACCACCACAAGGGGGGATCAGCGGCAGCAGGAA
ACTTACGGGGCTTCGGTGGTGGTAGAGGGGGTCGCGGAGGAGAAGGCTCG
GGCGAGAACTCCCTATCAGCAGTGCTCTCCTCCGCTGATTTCACCTCCTC
CTCTTCCTCTTGCTCTTCTTCCCAAGACGAAAGCTCGACGCCTGTCCTTG
ATCACTTGCCTATGACCCGTCGTAGGGGCTCACCGATGTATTTCAAGAGG
CAGCAGCAGCAGCAACAACAAAAACAACAGCAGCAAGATGACGAAGAGTT
TGAGGACGAGAATGTTGTGCTGGAAGTTGACAAAGGCCAAGCGCAGAAGC
AGCCCTTGTTGTCCTCCTCGGTCAAAGTAACGACTGCAGCGAGAGTAGAA
CTCAAGCAGCAGCAGCGGCAGCAGCAGCGATCCTTCGACGAGGAAGCTAC
TGTTATGGTATCGCGATTCGTTTTGAATGATTTGCCCGAGGAATTGTTTG
TGGAGCTGATGTGTCTGATGCGATGA
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Synonyms
Publications