NO10G01590, NO10G01590 (gene) Nannochloropsis oceanica

Overview
NameNO10G01590
Unique NameNO10G01590
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length801
Alignment locationchr10:455144..455944 -

Link to JBrowse

Properties
Property NameValue
DescriptionCarboxylic ester hydrolase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:455144..455944 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR029058AB_hydrolase
IPR002018CarbesteraseB
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Homology
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BLAST of NO10G01590 vs. NCBI_GenBank
Match: EWM25433.1 (cholinesterase precursor [Nannochloropsis gaditana])

HSP 1 Score: 161.0 bits (406), Expect = 5.100e-36
Identity = 111/299 (37.12%), Postives = 157/299 (52.51%), Query Frame = 0 
Query:    3 RSRAFVVETGCKD-----SSSNGSSSSDCSSGSMIDCLSQVSVGVLVSFSTAFGQDVYHYWAPLIYGDRFLPSTLAELLNSS----SSSLPPLPILLGFNRDEDTLFLLITGLQGSNGTDLAYSSWVLNGRMEEQQVPPPLSPSQQEKNLSLYPPKGDGSNDEKSVNIISDAHYKCP-----NYFGGEQEDVDPAASPIYFYVINTSSRKRVIPMQTTS------------DAN-----------MEVSFRMCRQNLNSTPCGGEGEDEGGREEEEMRRTLRGYWGAFARTMGEVRIRL 265
            R+  F    GC+      S SNGSS      G ++ CL+++S+ VL+  S+  G+++YHYWAP + GD FLP++ A LL+ S     +   PL +LLG NRDE ++F+  TGL G+ GTD AY+SWV  G ME  Q  PPLS +Q+E+ L +YPP+GDG N E    II+   Y CP     +++GG ++D     S   ++V     R+  I M+  S            + N            E+ +   +  L  TPC G+GE  G   E  M R +R YWGAF R+ G    RL
Sbjct:  261 RTETFAAGLGCRPGPGRRSPSNGSSEG-ADDGGLVACLTRLSLEVLIPESSERGREMYHYWAPALDGDLFLPASPATLLDPSVTPPLAPASPLNVLLGCNRDEGSVFVASTGLGGAGGTDAAYASWVRTGAMEYGQGLPPLSLAQREELLRVYPPRGDGKNAENVAAIIAHVRYACPSLFLASHYGGGRQDASEGVS--VWHVQQAGRRRHNIEMRPPSAYYYTFQYVQPQECNPGSEELGCYHGSEMPYLWAKPGL--TPC-GDGETNG--PETAMARAMRSYWGAFVRSGGASPSRL 551
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BLAST of NO10G01590 vs. NCBI_GenBank
Match: XP_005854731.1 (butyrylcholinesterase precursor, partial [Nannochloropsis gaditana CCMP526] >XP_005856377.1 butyrylcholinesterase precursor, partial [Nannochloropsis gaditana CCMP526] >EKU19980.1 butyrylcholinesterase precursor, partial [Nannochloropsis gaditana CCMP526] >EKU21628.1 butyrylcholinesterase precursor, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 107.1 bits (266), Expect = 8.800e-20
Identity = 63/142 (44.37%), Postives = 87/142 (61.27%), Query Frame = 0 
Query:    3 RSRAFVVETGCKD-----SSSNGSSSSDCSSGSMIDCLSQVSVGVLVSFSTAFGQDVYHYWAPLIYGDRFLPSTLAELLNSS----SSSLPPLPILLGFNRDEDTLFLLITGLQGSNGTDLAYSSWVLNGRMEEQQVPPPLS 136
            R+  F    GC+      S SNGSS      G ++ CL+++S+ VL+  S+  G+++YHYWAP + GD FLP++ A LL+ S     +   PL +LLG NRDE ++F+  TGL G+ GTD AY+SWV  G ME  Q  PPLS
Sbjct:   91 RTETFAAGLGCRPGPGRRSPSNGSSEG-ADDGGLVACLTRLSLEVLIPESSERGREMYHYWAPALDGDLFLPASPATLLDPSVTPPLAPASPLNVLLGCNRDEGSVFVASTGLGGAGGTDAAYASWVRTGAMEYGQGLPPLS 231
The following BLAST results are available for this feature:
BLAST of NO10G01590 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM25433.15.100e-3637.12cholinesterase precursor [Nannochloropsis gaditana... [more]
XP_005854731.18.800e-2044.37butyrylcholinesterase precursor, partial [Nannochl... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001031NSK001031Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G01590.1NO10G01590.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100005g92gene5119Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G01590.1NO10G01590.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G01590 ID=NO10G01590|Name=NO10G01590|organism=Nannochloropsis oceanica|type=gene|length=801bp
ATGGCACGGAGTCGAGCGTTTGTTGTGGAGACGGGGTGTAAGGACAGCAG
CAGCAACGGCAGCAGCAGCAGCGATTGCAGTAGCGGCAGTATGATTGATT
GCTTGAGTCAAGTCTCAGTGGGCGTATTGGTGTCATTTTCAACGGCATTC
GGCCAAGACGTTTATCATTATTGGGCCCCCCTCATTTACGGCGACCGATT
CCTCCCCTCCACCCTTGCTGAGCTCCTCAACTCCTCCTCTTCCTCCCTCC
CTCCCCTACCCATCCTCCTCGGCTTCAACCGCGACGAAGACACCCTCTTC
CTCCTCATCACTGGCCTGCAAGGCTCAAACGGCACTGACCTTGCCTACTC
CTCATGGGTGCTTAACGGGAGAATGGAGGAACAACAAGTCCCCCCTCCGC
TTTCCCCCTCGCAACAAGAAAAAAATTTAAGCTTGTACCCTCCTAAAGGG
GATGGGTCAAATGACGAAAAAAGTGTAAATATTATATCGGATGCTCATTA
TAAATGTCCTAACTATTTCGGTGGGGAACAAGAGGACGTGGATCCCGCTG
CGTCCCCGATATATTTTTATGTTATCAATACGTCCAGCCGGAAGCGTGTA
ATCCCCATGCAGACGACCTCGGATGCTAACATGGAAGTGAGCTTCCGTAT
GTGTCGGCAAAATCTAAACTCAACACCGTGTGGTGGAGAAGGGGAGGACG
AGGGAGGGAGGGAGGAAGAGGAGATGAGGAGGACCTTGCGGGGGTATTGG
GGGGCGTTTGCTCGCACGATGGGAGAAGTCCGAATACGTTTGTGGAGATA
G
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protein sequence of NO10G01590.1

>NO10G01590.1-protein ID=NO10G01590.1-protein|Name=NO10G01590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=267bp
MARSRAFVVETGCKDSSSNGSSSSDCSSGSMIDCLSQVSVGVLVSFSTAF
GQDVYHYWAPLIYGDRFLPSTLAELLNSSSSSLPPLPILLGFNRDEDTLF
LLITGLQGSNGTDLAYSSWVLNGRMEEQQVPPPLSPSQQEKNLSLYPPKG
DGSNDEKSVNIISDAHYKCPNYFGGEQEDVDPAASPIYFYVINTSSRKRV
IPMQTTSDANMEVSFRMCRQNLNSTPCGGEGEDEGGREEEEMRRTLRGYW
GAFARTMGEVRIRLWR*
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Synonyms
Publications