NO10G01590.1, NO10G01590.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G01590.1
Unique NameNO10G01590.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length801
Alignment locationchr10:455144..455944 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:455144..455944 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G01590.1 vs.
Match: EWM25433.1 (cholinesterase precursor [Nannochloropsis gaditana])

HSP 1 Score: 159.5 bits (402), Expect = 1.500e-35
Identity = 109/297 (36.70%), Postives = 153/297 (51.52%), Query Frame = 0 
Query:    3 RSRAFVVETGCKD-----SSSNGSSSSDCSSGSMIDCLSQVSVGVLVSFSTAFGQDVYHYWAPLIYGDRFLPSTLAELLNSSSSS----LPPLPILLGFNRDEDTLFLLITGLQGSNGTDLAYSSWVLNGRMEEQQVPPPLSPSQQEKNLSLYPPKGDGSNDEKSVNIISDAHYKCP-----NYFGGEQEDVDPAASPIYFYVINTSSRKRVIPMQTTSDANMEVSF---RMCRQNLNS------------------TPCGGEGEDEGGREEEEMRRTLRGYWGAFARTMGEVRIRL 265
            R+  F    GC+      S SNGSS      G ++ CL+++S+ VL+  S+  G+++YHYWAP + GD FLP++ A LL+ S +       PL +LLG NRDE ++F+  TGL G+ GTD AY+SWV  G ME  Q  PPLS +Q+E+ L +YPP+GDG N E    II+   Y CP     +++GG ++D     S   ++V     R+  I M+  S       +   + C                        TPC G+GE  G   E  M R +R YWGAF R+ G    RL
Sbjct:  261 RTETFAAGLGCRPGPGRRSPSNGSSEG-ADDGGLVACLTRLSLEVLIPESSERGREMYHYWAPALDGDLFLPASPATLLDPSVTPPLAPASPLNVLLGCNRDEGSVFVASTGLGGAGGTDAAYASWVRTGAMEYGQGLPPLSLAQREELLRVYPPRGDGKNAENVAAIIAHVRYACPSLFLASHYGGGRQDASEGVS--VWHVQQAGRRRHNIEMRPPSAYYYTFQYVQPQECNPGSEELGCYHGSEMPYLWAKPGLTPC-GDGETNG--PETAMARAMRSYWGAFVRSGGASPSRL 551
The following BLAST results are available for this feature:
BLAST of NO10G01590.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25433.11.500e-3536.70cholinesterase precursor [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G01590NO10G01590Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G01590.1NO10G01590.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G01590.1.cds1NO10G01590.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G01590.1 ID=NO10G01590.1|Name=NO10G01590.1|organism=Nannochloropsis oceanica|type=mRNA|length=801bp
ATGGCACGGAGTCGAGCGTTTGTTGTGGAGACGGGGTGTAAGGACAGCAG
CAGCAACGGCAGCAGCAGCAGCGATTGCAGTAGCGGCAGTATGATTGATT
GCTTGAGTCAAGTCTCAGTGGGCGTATTGGTGTCATTTTCAACGGCATTC
GGCCAAGACGTTTATCATTATTGGGCCCCCCTCATTTACGGCGACCGATT
CCTCCCCTCCACCCTTGCTGAGCTCCTCAACTCCTCCTCTTCCTCCCTCC
CTCCCCTACCCATCCTCCTCGGCTTCAACCGCGACGAAGACACCCTCTTC
CTCCTCATCACTGGCCTGCAAGGCTCAAACGGCACTGACCTTGCCTACTC
CTCATGGGTGCTTAACGGGAGAATGGAGGAACAACAAGTCCCCCCTCCGC
TTTCCCCCTCGCAACAAGAAAAAAATTTAAGCTTGTACCCTCCTAAAGGG
GATGGGTCAAATGACGAAAAAAGTGTAAATATTATATCGGATGCTCATTA
TAAATGTCCTAACTATTTCGGTGGGGAACAAGAGGACGTGGATCCCGCTG
CGTCCCCGATATATTTTTATGTTATCAATACGTCCAGCCGGAAGCGTGTA
ATCCCCATGCAGACGACCTCGGATGCTAACATGGAAGTGAGCTTCCGTAT
GTGTCGGCAAAATCTAAACTCAACACCGTGTGGTGGAGAAGGGGAGGACG
AGGGAGGGAGGGAGGAAGAGGAGATGAGGAGGACCTTGCGGGGGTATTGG
GGGGCGTTTGCTCGCACGATGGGAGAAGTCCGAATACGTTTGTGGAGATA
G
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protein sequence of NO10G01590.1

>NO10G01590.1-protein ID=NO10G01590.1-protein|Name=NO10G01590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=267bp
MARSRAFVVETGCKDSSSNGSSSSDCSSGSMIDCLSQVSVGVLVSFSTAF
GQDVYHYWAPLIYGDRFLPSTLAELLNSSSSSLPPLPILLGFNRDEDTLF
LLITGLQGSNGTDLAYSSWVLNGRMEEQQVPPPLSPSQQEKNLSLYPPKG
DGSNDEKSVNIISDAHYKCPNYFGGEQEDVDPAASPIYFYVINTSSRKRV
IPMQTTSDANMEVSFRMCRQNLNSTPCGGEGEDEGGREEEEMRRTLRGYW
GAFARTMGEVRIRLWR*
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mRNA from alignment at chr10:455144..455944-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G01590.1 ID=NO10G01590.1|Name=NO10G01590.1|organism=Nannochloropsis oceanica|type=mRNA|length=801bp|location=Sequence derived from alignment at chr10:455144..455944- (Nannochloropsis oceanica)
ATGGCACGGAGTCGAGCGTTTGTTGTGGAGACGGGGTGTAAGGACAGCAG
CAGCAACGGCAGCAGCAGCAGCGATTGCAGTAGCGGCAGTATGATTGATT
GCTTGAGTCAAGTCTCAGTGGGCGTATTGGTGTCATTTTCAACGGCATTC
GGCCAAGACGTTTATCATTATTGGGCCCCCCTCATTTACGGCGACCGATT
CCTCCCCTCCACCCTTGCTGAGCTCCTCAACTCCTCCTCTTCCTCCCTCC
CTCCCCTACCCATCCTCCTCGGCTTCAACCGCGACGAAGACACCCTCTTC
CTCCTCATCACTGGCCTGCAAGGCTCAAACGGCACTGACCTTGCCTACTC
CTCATGGGTGCTTAACGGGAGAATGGAGGAACAACAAGTCCCCCCTCCGC
TTTCCCCCTCGCAACAAGAAAAAAATTTAAGCTTGTACCCTCCTAAAGGG
GATGGGTCAAATGACGAAAAAAGTGTAAATATTATATCGGATGCTCATTA
TAAATGTCCTAACTATTTCGGTGGGGAACAAGAGGACGTGGATCCCGCTG
CGTCCCCGATATATTTTTATGTTATCAATACGTCCAGCCGGAAGCGTGTA
ATCCCCATGCAGACGACCTCGGATGCTAACATGGAAGTGAGCTTCCGTAT
GTGTCGGCAAAATCTAAACTCAACACCGTGTGGTGGAGAAGGGGAGGACG
AGGGAGGGAGGGAGGAAGAGGAGATGAGGAGGACCTTGCGGGGGTATTGG
GGGGCGTTTGCTCGCACGATGGGAGAAGTCCGAATACGTTTGTGGAGATA
G
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Coding sequence (CDS) from alignment at chr10:455144..455944-

>NO10G01590.1 ID=NO10G01590.1|Name=NO10G01590.1|organism=Nannochloropsis oceanica|type=CDS|length=801bp|location=Sequence derived from alignment at chr10:455144..455944- (Nannochloropsis oceanica)
ATGGCACGGAGTCGAGCGTTTGTTGTGGAGACGGGGTGTAAGGACAGCAG
CAGCAACGGCAGCAGCAGCAGCGATTGCAGTAGCGGCAGTATGATTGATT
GCTTGAGTCAAGTCTCAGTGGGCGTATTGGTGTCATTTTCAACGGCATTC
GGCCAAGACGTTTATCATTATTGGGCCCCCCTCATTTACGGCGACCGATT
CCTCCCCTCCACCCTTGCTGAGCTCCTCAACTCCTCCTCTTCCTCCCTCC
CTCCCCTACCCATCCTCCTCGGCTTCAACCGCGACGAAGACACCCTCTTC
CTCCTCATCACTGGCCTGCAAGGCTCAAACGGCACTGACCTTGCCTACTC
CTCATGGGTGCTTAACGGGAGAATGGAGGAACAACAAGTCCCCCCTCCGC
TTTCCCCCTCGCAACAAGAAAAAAATTTAAGCTTGTACCCTCCTAAAGGG
GATGGGTCAAATGACGAAAAAAGTGTAAATATTATATCGGATGCTCATTA
TAAATGTCCTAACTATTTCGGTGGGGAACAAGAGGACGTGGATCCCGCTG
CGTCCCCGATATATTTTTATGTTATCAATACGTCCAGCCGGAAGCGTGTA
ATCCCCATGCAGACGACCTCGGATGCTAACATGGAAGTGAGCTTCCGTAT
GTGTCGGCAAAATCTAAACTCAACACCGTGTGGTGGAGAAGGGGAGGACG
AGGGAGGGAGGGAGGAAGAGGAGATGAGGAGGACCTTGCGGGGGTATTGG
GGGGCGTTTGCTCGCACGATGGGAGAAGTCCGAATACGTTTGTGGAGATA
G
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Synonyms
Publications