NO10G01580, NO10G01580 (gene) Nannochloropsis oceanica

Overview
NameNO10G01580
Unique NameNO10G01580
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2446
Alignment locationchr10:452318..454763 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:452318..454763 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR025856HeH/LEM_domain
Homology
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BLAST of NO10G01580 vs. NCBI_GenBank
Match: EWM25367.1 (hypothetical protein Naga_100005g93 [Nannochloropsis gaditana])

HSP 1 Score: 191.4 bits (485), Expect = 8.500e-45
Identity = 396/638 (62.07%), Postives = 429/638 (67.24%), Query Frame = 0 
Query:   11 QVRCIALMVSASLPTLSSAFVCRPNSGALSPTLSISSAISLPRRTAARTSMLPVNLASLDVLLAESSLAVDIPVLSPTSALEAFAVLTVPLFLFAGLQLTRQDDRKPK-NADDPINEMSTNDILTKLFVEVEGKEPTSMFSSSSTASPLMPVKLEARGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESGAEWEEMRRLERESQELLSLSPSTLRTGGKAAFSPEGEFIKRGSKISVPAGVELVGAAGAAVGSSVVEKVSKEEVEKERKELLMGLDAVMQDLQRRAEERKGPKLTAKDGKISAXXXXXXXXXXXXXXXXXXXEASVS------------DPTAVVKKLTIPKLKDILLVNGVK-CSSRAKKEELVRLVVGLVEKNPGVL 635
            ++  +AL ++    +LSSAFV RP+ G  +P  S        R T  R   LP   ASLD+LL+ESSL +DIPVLSPTSALEAFAVL VPL LFAGLQLTRQ +       DDPIN+MSTNDIL+KLF EVEGKEPTSMFSSS  ASPL   KL+ARGG                                               XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                         + G EWEEMRRLE ES +LL LSPS    G K AF PEGEF+KRG + SVP GV+    A  A    +  KVSK E EKERKELLMGLDAVMQDLQRRAEE+KG     ++ KI+A                    ++ +            D T V +KLT+PKLK IL    VK  SSRAKK+ELVRLVV L  +NP +L
Sbjct:   11 KIELLALFLAGYFASLSSAFVSRPH-GPHAPVPS-------RRGTGRRAVSLPQEFASLDILLSESSLDIDIPVLSPTSALEAFAVLAVPLLLFAGLQLTRQGEGTGNTEKDDPINDMSTNDILSKLFKEVEGKEPTSMFSSS--ASPLASAKLDARGG------------------------------------AGGRGLLERPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLARMIREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESKISVDPVVSAAVAPAEKPMVAGEKEGKEWEEMRRLEEESAKLLELSPSA--RGNKRAFVPEGEFVKRGGRASVPVGVQTADLAEPA----IERKVSKAEAEKERKELLMGLDAVMQDLQRRAEEKKGQLTAVREKKIAASDPASPPGPKKTGRTKGKAASAPAAGGVPPTPGKGDDLTVVARKLTVPKLKAILQAQQVKPSSSRAKKDELVRLVVALAVENPTIL 596
The following BLAST results are available for this feature:
BLAST of NO10G01580 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25367.18.500e-4562.07hypothetical protein Naga_100005g93 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001030NSK001030Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G01580.1NO10G01580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586331gene_4058Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100005g93gene5120Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G01580.1NO10G01580.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G01580 ID=NO10G01580|Name=NO10G01580|organism=Nannochloropsis oceanica|type=gene|length=2446bp
ACAGCACAGTTTCTGGCACATTTTCCGTGTTGTATCCGAATCAAATCAAC
CGCGCCAGGAAGCTCTACTCAACCACGCCCTACTCGTCCAAGTAGCGGTC
TCTGTCACCCCCACCAAAAGGATGAGACACCCGCAACGACCCAGCCGCCG
CCAGGTGCGGTGCATTGCGCTAATGGTCTCAGCAAGCCTGCCTACCTTGT
CCTCCGCATTCGTGTGCCGGCCAAACAGCGGCGCCCTTTCCCCAACACTC
TCCATCTCTTCTGCCATCTCCCTTCCAAGGCGGACGGCAGCACGCACGTC
CATGCTCCCTGTGAACCTCGCTTCTCTGGATGTGTTGCTCGCCGAGTCCA
GTCTGGCGGTTGACATTCCCGTCTTGTCCCCAACCTCGGCCTTAGAAGCC
TTTGCAGTACTAACCGTGCCTCTCTTTCTATTCGCTGGCCTGCAACTCAC
CCGTCAAGACGACCGAAAGCCAAAAAACGCGGACGATCCCATCAATGAAA
TGAGCACCAATGATATCCTGACTAAACTATTCGTCGAAGTGGAGGGAAAG
GAGCCTACCTCCATGTTCTCCTCGTCTTCCACCGCCTCTCCCTTGATGCC
GGTCAAGCTCGAGGCCCGCGGTGGGGCAGGGGGAGGAAAGGGGTCGAGTG
TACTCGAGCGTCCGCCCGCGCCCTCCCCTGTCGATGAGGAGGTCCGCCAG
ACTAAGCTCCGGGCCTCCGAAGAGCAGGAACGGGCCAAGGCAGCTGCAGC
GGCAGCAGCTGTGACCAAGAGGAAGGAGGAGGAAGAGAAGGCGGCATCGG
CAGCAGCTGCTCAGAAAGCCGCGGACGTGAAGGCGGCACAGGAAGAGGAA
CATGTTCGCAAGGAAATGGAGGCGAAAGCAGCCGCTGTCAGGGCGATGGA
GGAAGCCAAGGCCAAAGCTGAGGCGGAAGTGCTGGCGCTGAAGAAGAAGC
AGGCGGAAGAATTACTCGAGATCGAGATGCGCAAGCAACGCGAATTGAAA
ATGAAGGAGGAGACCGAGAATATACGTATTGTTCTAGAAGCCCGTGTAGC
CGCTGTGAAGGCCAAGCGTGAGCAGGAGAAGGAGAAGGAGGAGAAGCGGA
AGCTAGTGGCACGGGCAGCGAGGGAAGCTGCAGCAAGGAAGGAAGAGGAG
CAAGAGAAGAGGATGATTGAGATTCGGCAACAACAAGAGCTGGCCAAGCG
TGCGGAGAGGATCAAGCTAGAGTTGGAGCGGGCACAGAAGGAGAAAGAAG
AGAAGGCTCTGCGGTTGCAACAGCAGTTGATGATCGAGGCCAAGGAAAAG
GAGATGCCGGCAAAGAAGAAACTGAGAGATGAAGAAGAGAAGAAGATGAA
GGCCACAGCTATTGCGGCTGATGCATCTGCCAAGGCTACCGCTGCAGCTG
CTGCCACTACTACCAAGGCTGCAGCGGCGAGCAAGGCCGCTGTCAAGAGC
AAGAAGGAAAGTGGGGCAGAATGGGAAGAAATGCGTCGGTTGGAACGAGA
GAGTCAGGAGCTGTTGTCCCTCTCTCCTTCGACTCTACGAACGGGGGGGA
AGGCCGCCTTTTCCCCAGAGGGTGAGTTCATAAAGCGTGGTAGCAAGATC
TCTGTGCCCGCTGGAGTGGAGCTTGTGGGAGCAGCAGGAGCAGCAGTAGG
GTCTTCGGTAGTGGAGAAGGTGAGCAAGGAGGAGGTGGAGAAGGAGAGGA
AAGAGTTATTGATGGGCTTGGATGCCGTCATGCAGGATCTCCAGCGACGC
GCGGAGGAGAGAAAGGGGCCAAAATTAACTGCGAAGGATGGGAAGATCAG
CGCTAGCGCTAGCAGCAGCAGTAGTAAGAAGGCTCCAGCCAAGCCACCAG
CAGCAGCAGTAGAGGCGTCAGTGTCGGACCCGACAGCAGTAGTTAAGAAA
TTAACTATTCCGAAGTTGAAGGACATTTTGCTGGTGAACGGTGTGAAATG
CTCGAGCCGGGCGAAGAAGGAGGAGTTGGTTCGACTAGTGGTGGGGCTGG
TTGAGAAGAATCCGGGAGTTTTGACGGCGGTGACTACGAAGTAAGGGAAG
GTAGGGAAGGATGCATCAGCATGAAAGCAAAAATAAGAACTTACTCAAGT
GATGAGAGAGAAGTGGAAAGTGGACTTTGACGTGGAGAGATGGAGATAAG
ACAGCTAAAGCTGGAGGGGAGAGAGCGAGTGCTGCAAGGCACATATACAT
GATACTTTTACCCCATCAAACAAACTCTCGAATCGAAAAGCGGAAAAACA
ACAAAAGGTTACTAGAAAAATATGTAGAACAGGAGAAGAACAATTGGAGG
CAAGGAAGCAAGGATACGTGTTTTGGTGCGTGTGTGTGTGTGTGTGTGTG
TGTGTGACCAGGGCTGATTGACAAAAGAATCCGTAGAAATGATTGGACTC
AAAAACACCGGAACGAGAAGGAAGAATAAGAGCACCTATTCGCACG
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protein sequence of NO10G01580.1

>NO10G01580.1-protein ID=NO10G01580.1-protein|Name=NO10G01580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=641bp
MRHPQRPSRRQVRCIALMVSASLPTLSSAFVCRPNSGALSPTLSISSAIS
LPRRTAARTSMLPVNLASLDVLLAESSLAVDIPVLSPTSALEAFAVLTVP
LFLFAGLQLTRQDDRKPKNADDPINEMSTNDILTKLFVEVEGKEPTSMFS
SSSTASPLMPVKLEARGGAGGGKGSSVLERPPAPSPVDEEVRQTKLRASE
EQERAKAAAAAAAVTKRKEEEEKAASAAAAQKAADVKAAQEEEHVRKEME
AKAAAVRAMEEAKAKAEAEVLALKKKQAEELLEIEMRKQRELKMKEETEN
IRIVLEARVAAVKAKREQEKEKEEKRKLVARAAREAAARKEEEQEKRMIE
IRQQQELAKRAERIKLELERAQKEKEEKALRLQQQLMIEAKEKEMPAKKK
LRDEEEKKMKATAIAADASAKATAAAAATTTKAAAASKAAVKSKKESGAE
WEEMRRLERESQELLSLSPSTLRTGGKAAFSPEGEFIKRGSKISVPAGVE
LVGAAGAAVGSSVVEKVSKEEVEKERKELLMGLDAVMQDLQRRAEERKGP
KLTAKDGKISASASSSSSKKAPAKPPAAAVEASVSDPTAVVKKLTIPKLK
DILLVNGVKCSSRAKKEELVRLVVGLVEKNPGVLTAVTTK*
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Synonyms
Publications