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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr10 | genome | chr10:452318..454763 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO10G01580.1 vs.
Match: EWM25367.1 (hypothetical protein Naga_100005g93 [Nannochloropsis gaditana]) HSP 1 Score: 419.9 bits (1078), Expect = 1.500e-113 Identity = 336/638 (52.66%), Postives = 408/638 (63.95%), Query Frame = 0
Query: 11 QVRCIALMVSASLPTLSSAFVCRPNSGALSPTLSISSAISLPRRTAARTSMLPVNLASLDVLLAESSLAVDIPVLSPTSALEAFAVLTVPLFLFAGLQLTRQDDRKPK-NADDPINEMSTNDILTKLFVEVEGKEPTSMFSSSSTASPLMPVKLEARGGAGGGKGSSVLERPPAPSPVDEEVRQTKLRASEEQERAKAAAAAAAVTKRKEEEEKAASAAAAQKAADVKAAQEEEHVRKEMEAKAAAVRAMEEAKAKAEAEVLALKKKQAEELLEIEMRKQRELKMKEETENIRIVLEARVAAVKAKREQEKEKEEKRKLVARAAREAAARKEEEQEKRMIEIRQQQELAKRAERIKLELERAQKEKEEKALRLQQQLMIEAKEKEMPAKKKLRDEEEKKMKATAIAADASAKATAAAAATTTKAAAASKAAVKSKKESGAEWEEMRRLERESQELLSLSPSTLRTGGKAAFSPEGEFIKRGSKISVPAGVELVGAAGAAVGSSVVEKVSKEEVEKERKELLMGLDAVMQDLQRRAEERKGPKLTAKDGKISASASSS---------SSKKAPAKPPAAAVEASV---SDPTAVVKKLTIPKLKDILLVNGVK-CSSRAKKEELVRLVVGLVEKNPGVL 635
++ +AL ++ +LSSAFV RP+ G +P S R T R LP ASLD+LL+ESSL +DIPVLSPTSALEAFAVL VPL LFAGLQLTRQ + DDPIN+MSTNDIL+KLF EVEGKEPTSMFSSS ASPL KL+ARGGAG G +LERPPAP+PVDEE+R K RA EE +RA+ AAA A +EEE+KA AAAA+KAA K+AQE+E +R E AKA R EEAKA+ EA ALKKK+ E+ E E+R+QRE +MKEE R EAR AA KAKRE+EKE+E+KRKL+AR RE AA+K+EE EKR++E ++QELA+RA ERAQKE++ + + + + E+ K + +E K I+ D A A A K V +KE G EWEEMRRLE ES +LL LSPS G K AF PEGEF+KRG + SVP GV+ A A + KVSK E EKERKELLMGLDAVMQDLQRRAEE+KG ++ KI+AS +S + KA + P A V + D T V +KLT+PKLK IL VK SSRAKK+ELVRLVV L +NP +L
Sbjct: 11 KIELLALFLAGYFASLSSAFVSRPH-GPHAPVPS-------RRGTGRRAVSLPQEFASLDILLSESSLDIDIPVLSPTSALEAFAVLAVPLLLFAGLQLTRQGEGTGNTEKDDPINDMSTNDILSKLFKEVEGKEPTSMFSSS--ASPLASAKLDARGGAG---GRGLLERPPAPAPVDEELRLRKARALEEDDRARTAAARA-----REEEDKALIAAAAEKAAAAKSAQEKERLRLEAAAKAMEARVAEEAKAREEAAAEALKKKEEEKEREEELRRQRETRMKEEAAKARAAAEARAAAAKAKREEEKEREQKRKLLARMIREDAAKKQEEHEKRLLEAWKEQELARRA-------ERAQKERQP-----TKGVSVTSTERGRGKKSRAGKKESK------ISVDPVVSAA---------VAPAEKPMVAGEKE-GKEWEEMRRLEEESAKLLELSPSA--RGNKRAFVPEGEFVKRGGRASVPVGVQTADLAEPA----IERKVSKAEAEKERKELLMGLDAVMQDLQRRAEEKKGQLTAVREKKIAASDPASPPGPKKTGRTKGKAASAPAAGGVPPTPGKGDDLTVVARKLTVPKLKAILQAQQVKPSSSRAKKDELVRLVVALAVENPTIL 596
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO10G01580.1 ID=NO10G01580.1|Name=NO10G01580.1|organism=Nannochloropsis oceanica|type=mRNA|length=2446bp
ACAGCACAGTTTCTGGCACATTTTCCGTGTTGTATCCGAATCAAATCAAC
CGCGCCAGGAAGCTCTACTCAACCACGCCCTACTCGTCCAAGTAGCGGTC
TCTGTCACCCCCACCAAAAGGATGAGACACCCGCAACGACCCAGCCGCCG
CCAGGTGCGGTGCATTGCGCTAATGGTCTCAGCAAGCCTGCCTACCTTGT
CCTCCGCATTCGTGTGCCGGCCAAACAGCGGCGCCCTTTCCCCAACACTC
TCCATCTCTTCTGCCATCTCCCTTCCAAGGCGGACGGCAGCACGCACGTC
CATGCTCCCTGTGAACCTCGCTTCTCTGGATGTGTTGCTCGCCGAGTCCA
GTCTGGCGGTTGACATTCCCGTCTTGTCCCCAACCTCGGCCTTAGAAGCC
TTTGCAGTACTAACCGTGCCTCTCTTTCTATTCGCTGGCCTGCAACTCAC
CCGTCAAGACGACCGAAAGCCAAAAAACGCGGACGATCCCATCAATGAAA
TGAGCACCAATGATATCCTGACTAAACTATTCGTCGAAGTGGAGGGAAAG
GAGCCTACCTCCATGTTCTCCTCGTCTTCCACCGCCTCTCCCTTGATGCC
GGTCAAGCTCGAGGCCCGCGGTGGGGCAGGGGGAGGAAAGGGGTCGAGTG
TACTCGAGCGTCCGCCCGCGCCCTCCCCTGTCGATGAGGAGGTCCGCCAG
ACTAAGCTCCGGGCCTCCGAAGAGCAGGAACGGGCCAAGGCAGCTGCAGC
GGCAGCAGCTGTGACCAAGAGGAAGGAGGAGGAAGAGAAGGCGGCATCGG
CAGCAGCTGCTCAGAAAGCCGCGGACGTGAAGGCGGCACAGGAAGAGGAA
CATGTTCGCAAGGAAATGGAGGCGAAAGCAGCCGCTGTCAGGGCGATGGA
GGAAGCCAAGGCCAAAGCTGAGGCGGAAGTGCTGGCGCTGAAGAAGAAGC
AGGCGGAAGAATTACTCGAGATCGAGATGCGCAAGCAACGCGAATTGAAA
ATGAAGGAGGAGACCGAGAATATACGTATTGTTCTAGAAGCCCGTGTAGC
CGCTGTGAAGGCCAAGCGTGAGCAGGAGAAGGAGAAGGAGGAGAAGCGGA
AGCTAGTGGCACGGGCAGCGAGGGAAGCTGCAGCAAGGAAGGAAGAGGAG
CAAGAGAAGAGGATGATTGAGATTCGGCAACAACAAGAGCTGGCCAAGCG
TGCGGAGAGGATCAAGCTAGAGTTGGAGCGGGCACAGAAGGAGAAAGAAG
AGAAGGCTCTGCGGTTGCAACAGCAGTTGATGATCGAGGCCAAGGAAAAG
GAGATGCCGGCAAAGAAGAAACTGAGAGATGAAGAAGAGAAGAAGATGAA
GGCCACAGCTATTGCGGCTGATGCATCTGCCAAGGCTACCGCTGCAGCTG
CTGCCACTACTACCAAGGCTGCAGCGGCGAGCAAGGCCGCTGTCAAGAGC
AAGAAGGAAAGTGGGGCAGAATGGGAAGAAATGCGTCGGTTGGAACGAGA
GAGTCAGGAGCTGTTGTCCCTCTCTCCTTCGACTCTACGAACGGGGGGGA
AGGCCGCCTTTTCCCCAGAGGGTGAGTTCATAAAGCGTGGTAGCAAGATC
TCTGTGCCCGCTGGAGTGGAGCTTGTGGGAGCAGCAGGAGCAGCAGTAGG
GTCTTCGGTAGTGGAGAAGGTGAGCAAGGAGGAGGTGGAGAAGGAGAGGA
AAGAGTTATTGATGGGCTTGGATGCCGTCATGCAGGATCTCCAGCGACGC
GCGGAGGAGAGAAAGGGGCCAAAATTAACTGCGAAGGATGGGAAGATCAG
CGCTAGCGCTAGCAGCAGCAGTAGTAAGAAGGCTCCAGCCAAGCCACCAG
CAGCAGCAGTAGAGGCGTCAGTGTCGGACCCGACAGCAGTAGTTAAGAAA
TTAACTATTCCGAAGTTGAAGGACATTTTGCTGGTGAACGGTGTGAAATG
CTCGAGCCGGGCGAAGAAGGAGGAGTTGGTTCGACTAGTGGTGGGGCTGG
TTGAGAAGAATCCGGGAGTTTTGACGGCGGTGACTACGAAGTAAGGGAAG
GTAGGGAAGGATGCATCAGCATGAAAGCAAAAATAAGAACTTACTCAAGT
GATGAGAGAGAAGTGGAAAGTGGACTTTGACGTGGAGAGATGGAGATAAG
ACAGCTAAAGCTGGAGGGGAGAGAGCGAGTGCTGCAAGGCACATATACAT
GATACTTTTACCCCATCAAACAAACTCTCGAATCGAAAAGCGGAAAAACA
ACAAAAGGTTACTAGAAAAATATGTAGAACAGGAGAAGAACAATTGGAGG
CAAGGAAGCAAGGATACGTGTTTTGGTGCGTGTGTGTGTGTGTGTGTGTG
TGTGTGACCAGGGCTGATTGACAAAAGAATCCGTAGAAATGATTGGACTC
AAAAACACCGGAACGAGAAGGAAGAATAAGAGCACCTATTCGCACG back to topprotein sequence of NO10G01580.1 >NO10G01580.1-protein ID=NO10G01580.1-protein|Name=NO10G01580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=641bp
MRHPQRPSRRQVRCIALMVSASLPTLSSAFVCRPNSGALSPTLSISSAIS
LPRRTAARTSMLPVNLASLDVLLAESSLAVDIPVLSPTSALEAFAVLTVP
LFLFAGLQLTRQDDRKPKNADDPINEMSTNDILTKLFVEVEGKEPTSMFS
SSSTASPLMPVKLEARGGAGGGKGSSVLERPPAPSPVDEEVRQTKLRASE
EQERAKAAAAAAAVTKRKEEEEKAASAAAAQKAADVKAAQEEEHVRKEME
AKAAAVRAMEEAKAKAEAEVLALKKKQAEELLEIEMRKQRELKMKEETEN
IRIVLEARVAAVKAKREQEKEKEEKRKLVARAAREAAARKEEEQEKRMIE
IRQQQELAKRAERIKLELERAQKEKEEKALRLQQQLMIEAKEKEMPAKKK
LRDEEEKKMKATAIAADASAKATAAAAATTTKAAAASKAAVKSKKESGAE
WEEMRRLERESQELLSLSPSTLRTGGKAAFSPEGEFIKRGSKISVPAGVE
LVGAAGAAVGSSVVEKVSKEEVEKERKELLMGLDAVMQDLQRRAEERKGP
KLTAKDGKISASASSSSSKKAPAKPPAAAVEASVSDPTAVVKKLTIPKLK
DILLVNGVKCSSRAKKEELVRLVVGLVEKNPGVLTAVTTK* back to topmRNA from alignment at chr10:452318..454763+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO10G01580.1 ID=NO10G01580.1|Name=NO10G01580.1|organism=Nannochloropsis oceanica|type=mRNA|length=2446bp|location=Sequence derived from alignment at chr10:452318..454763+ (Nannochloropsis oceanica)
ACAGCACAGTTTCTGGCACATTTTCCGTGTTGTATCCGAATCAAATCAAC
CGCGCCAGGAAGCTCTACTCAACCACGCCCTACTCGTCCAAGTAGCGGTC
TCTGTCACCCCCACCAAAAGGATGAGACACCCGCAACGACCCAGCCGCCG
CCAGGTGCGGTGCATTGCGCTAATGGTCTCAGCAAGCCTGCCTACCTTGT
CCTCCGCATTCGTGTGCCGGCCAAACAGCGGCGCCCTTTCCCCAACACTC
TCCATCTCTTCTGCCATCTCCCTTCCAAGGCGGACGGCAGCACGCACGTC
CATGCTCCCTGTGAACCTCGCTTCTCTGGATGTGTTGCTCGCCGAGTCCA
GTCTGGCGGTTGACATTCCCGTCTTGTCCCCAACCTCGGCCTTAGAAGCC
TTTGCAGTACTAACCGTGCCTCTCTTTCTATTCGCTGGCCTGCAACTCAC
CCGTCAAGACGACCGAAAGCCAAAAAACGCGGACGATCCCATCAATGAAA
TGAGCACCAATGATATCCTGACTAAACTATTCGTCGAAGTGGAGGGAAAG
GAGCCTACCTCCATGTTCTCCTCGTCTTCCACCGCCTCTCCCTTGATGCC
GGTCAAGCTCGAGGCCCGCGGTGGGGCAGGGGGAGGAAAGGGGTCGAGTG
TACTCGAGCGTCCGCCCGCGCCCTCCCCTGTCGATGAGGAGGTCCGCCAG
ACTAAGCTCCGGGCCTCCGAAGAGCAGGAACGGGCCAAGGCAGCTGCAGC
GGCAGCAGCTGTGACCAAGAGGAAGGAGGAGGAAGAGAAGGCGGCATCGG
CAGCAGCTGCTCAGAAAGCCGCGGACGTGAAGGCGGCACAGGAAGAGGAA
CATGTTCGCAAGGAAATGGAGGCGAAAGCAGCCGCTGTCAGGGCGATGGA
GGAAGCCAAGGCCAAAGCTGAGGCGGAAGTGCTGGCGCTGAAGAAGAAGC
AGGCGGAAGAATTACTCGAGATCGAGATGCGCAAGCAACGCGAATTGAAA
ATGAAGGAGGAGACCGAGAATATACGTATTGTTCTAGAAGCCCGTGTAGC
CGCTGTGAAGGCCAAGCGTGAGCAGGAGAAGGAGAAGGAGGAGAAGCGGA
AGCTAGTGGCACGGGCAGCGAGGGAAGCTGCAGCAAGGAAGGAAGAGGAG
CAAGAGAAGAGGATGATTGAGATTCGGCAACAACAAGAGCTGGCCAAGCG
TGCGGAGAGGATCAAGCTAGAGTTGGAGCGGGCACAGAAGGAGAAAGAAG
AGAAGGCTCTGCGGTTGCAACAGCAGTTGATGATCGAGGCCAAGGAAAAG
GAGATGCCGGCAAAGAAGAAACTGAGAGATGAAGAAGAGAAGAAGATGAA
GGCCACAGCTATTGCGGCTGATGCATCTGCCAAGGCTACCGCTGCAGCTG
CTGCCACTACTACCAAGGCTGCAGCGGCGAGCAAGGCCGCTGTCAAGAGC
AAGAAGGAAAGTGGGGCAGAATGGGAAGAAATGCGTCGGTTGGAACGAGA
GAGTCAGGAGCTGTTGTCCCTCTCTCCTTCGACTCTACGAACGGGGGGGA
AGGCCGCCTTTTCCCCAGAGGGTGAGTTCATAAAGCGTGGTAGCAAGATC
TCTGTGCCCGCTGGAGTGGAGCTTGTGGGAGCAGCAGGAGCAGCAGTAGG
GTCTTCGGTAGTGGAGAAGGTGAGCAAGGAGGAGGTGGAGAAGGAGAGGA
AAGAGTTATTGATGGGCTTGGATGCCGTCATGCAGGATCTCCAGCGACGC
GCGGAGGAGAGAAAGGGGCCAAAATTAACTGCGAAGGATGGGAAGATCAG
CGCTAGCGCTAGCAGCAGCAGTAGTAAGAAGGCTCCAGCCAAGCCACCAG
CAGCAGCAGTAGAGGCGTCAGTGTCGGACCCGACAGCAGTAGTTAAGAAA
TTAACTATTCCGAAGTTGAAGGACATTTTGCTGGTGAACGGTGTGAAATG
CTCGAGCCGGGCGAAGAAGGAGGAGTTGGTTCGACTAGTGGTGGGGCTGG
TTGAGAAGAATCCGGGAGTTTTGACGGCGGTGACTACGAAGTAAGGGAAG
GTAGGGAAGGATGCATCAGCATGAAAGCAAAAATAAGAACTTACTCAAGT
GATGAGAGAGAAGTGGAAAGTGGACTTTGACGTGGAGAGATGGAGATAAG
ACAGCTAAAGCTGGAGGGGAGAGAGCGAGTGCTGCAAGGCACATATACAT
GATACTTTTACCCCATCAAACAAACTCTCGAATCGAAAAGCGGAAAAACA
ACAAAAGGTTACTAGAAAAATATGTAGAACAGGAGAAGAACAATTGGAGG
CAAGGAAGCAAGGATACGTGTTTTGGTGCGTGTGTGTGTGTGTGTGTGTG
TGTGTGACCAGGGCTGATTGACAAAAGAATCCGTAGAAATGATTGGACTC
AAAAACACCGGAACGAGAAGGAAGAATAAGAGCACCTATTCGCACG back to topCoding sequence (CDS) from alignment at chr10:452318..454763+ >NO10G01580.1 ID=NO10G01580.1|Name=NO10G01580.1|organism=Nannochloropsis oceanica|type=CDS|length=1923bp|location=Sequence derived from alignment at chr10:452318..454763+ (Nannochloropsis oceanica)
ATGAGACACCCGCAACGACCCAGCCGCCGCCAGGTGCGGTGCATTGCGCT
AATGGTCTCAGCAAGCCTGCCTACCTTGTCCTCCGCATTCGTGTGCCGGC
CAAACAGCGGCGCCCTTTCCCCAACACTCTCCATCTCTTCTGCCATCTCC
CTTCCAAGGCGGACGGCAGCACGCACGTCCATGCTCCCTGTGAACCTCGC
TTCTCTGGATGTGTTGCTCGCCGAGTCCAGTCTGGCGGTTGACATTCCCG
TCTTGTCCCCAACCTCGGCCTTAGAAGCCTTTGCAGTACTAACCGTGCCT
CTCTTTCTATTCGCTGGCCTGCAACTCACCCGTCAAGACGACCGAAAGCC
AAAAAACGCGGACGATCCCATCAATGAAATGAGCACCAATGATATCCTGA
CTAAACTATTCGTCGAAGTGGAGGGAAAGGAGCCTACCTCCATGTTCTCC
TCGTCTTCCACCGCCTCTCCCTTGATGCCGGTCAAGCTCGAGGCCCGCGG
TGGGGCAGGGGGAGGAAAGGGGTCGAGTGTACTCGAGCGTCCGCCCGCGC
CCTCCCCTGTCGATGAGGAGGTCCGCCAGACTAAGCTCCGGGCCTCCGAA
GAGCAGGAACGGGCCAAGGCAGCTGCAGCGGCAGCAGCTGTGACCAAGAG
GAAGGAGGAGGAAGAGAAGGCGGCATCGGCAGCAGCTGCTCAGAAAGCCG
CGGACGTGAAGGCGGCACAGGAAGAGGAACATGTTCGCAAGGAAATGGAG
GCGAAAGCAGCCGCTGTCAGGGCGATGGAGGAAGCCAAGGCCAAAGCTGA
GGCGGAAGTGCTGGCGCTGAAGAAGAAGCAGGCGGAAGAATTACTCGAGA
TCGAGATGCGCAAGCAACGCGAATTGAAAATGAAGGAGGAGACCGAGAAT
ATACGTATTGTTCTAGAAGCCCGTGTAGCCGCTGTGAAGGCCAAGCGTGA
GCAGGAGAAGGAGAAGGAGGAGAAGCGGAAGCTAGTGGCACGGGCAGCGA
GGGAAGCTGCAGCAAGGAAGGAAGAGGAGCAAGAGAAGAGGATGATTGAG
ATTCGGCAACAACAAGAGCTGGCCAAGCGTGCGGAGAGGATCAAGCTAGA
GTTGGAGCGGGCACAGAAGGAGAAAGAAGAGAAGGCTCTGCGGTTGCAAC
AGCAGTTGATGATCGAGGCCAAGGAAAAGGAGATGCCGGCAAAGAAGAAA
CTGAGAGATGAAGAAGAGAAGAAGATGAAGGCCACAGCTATTGCGGCTGA
TGCATCTGCCAAGGCTACCGCTGCAGCTGCTGCCACTACTACCAAGGCTG
CAGCGGCGAGCAAGGCCGCTGTCAAGAGCAAGAAGGAAAGTGGGGCAGAA
TGGGAAGAAATGCGTCGGTTGGAACGAGAGAGTCAGGAGCTGTTGTCCCT
CTCTCCTTCGACTCTACGAACGGGGGGGAAGGCCGCCTTTTCCCCAGAGG
GTGAGTTCATAAAGCGTGGTAGCAAGATCTCTGTGCCCGCTGGAGTGGAG
CTTGTGGGAGCAGCAGGAGCAGCAGTAGGGTCTTCGGTAGTGGAGAAGGT
GAGCAAGGAGGAGGTGGAGAAGGAGAGGAAAGAGTTATTGATGGGCTTGG
ATGCCGTCATGCAGGATCTCCAGCGACGCGCGGAGGAGAGAAAGGGGCCA
AAATTAACTGCGAAGGATGGGAAGATCAGCGCTAGCGCTAGCAGCAGCAG
TAGTAAGAAGGCTCCAGCCAAGCCACCAGCAGCAGCAGTAGAGGCGTCAG
TGTCGGACCCGACAGCAGTAGTTAAGAAATTAACTATTCCGAAGTTGAAG
GACATTTTGCTGGTGAACGGTGTGAAATGCTCGAGCCGGGCGAAGAAGGA
GGAGTTGGTTCGACTAGTGGTGGGGCTGGTTGAGAAGAATCCGGGAGTTT
TGACGGCGGTGACTACGAAGTAA back to top
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