NO10G01500, NO10G01500 (gene) Nannochloropsis oceanica

Overview
NameNO10G01500
Unique NameNO10G01500
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1977
Alignment locationchr10:432976..434952 +

Link to JBrowse

Properties
Property NameValue
DescriptionAquaporin
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:432976..434952 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Molecular Function
TermDefinition
GO:0015267channel activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR023271Aquaporin-like
IPR000425MIP
Homology
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BLAST of NO10G01500 vs. NCBI_GenBank
Match: EWM25387.1 (Aquaporin [Nannochloropsis gaditana])

HSP 1 Score: 669.1 bits (1725), Expect = 1.200e-188
Identity = 367/560 (65.54%), Postives = 433/560 (77.32%), Query Frame = 0 
Query:    1 MRREDEENAHLVLNSNRSGAS-----------------TQHPQSYGAFVKSTNRSSLDTASLR-GDGTSLPSSRLPRLREHWPVIMEMLASYVLGLAGYSSHSSPWTMGLVFAGLAHAASTASVSGGASASGSYYVCGNPLLTMGQLCRGYVSLPRAVLFWSAQFLGITLATLTYTVNNGQGHAHAAVPGGLGVITPLTSCQTQSWGNALFLLSLFSSAFVYVGLAAWDSMALALEACCSFYGLATGAAYASAVASVQSRGMASGLLNPWMGVLGLIYHATTSPSASSASPIGLAGHSTSLAPSNMACDTLFILGPILGALLGVFLSWLTSLNGSEKESFLRSLSPIAPLLVEMLGVMYLVVTLGAAHRGWTTGALALALTLCAWRRSGAQFNSSITLVIFLLKRQMFRWTSLLFYVLAHLVGALLGVCFLLLLPPSRDMPPVSILEEPVVLGARNALLLFAFTTVYLCVFVANTDAEYDEGFLHPALMVGLTMTGLLGAMACNSDADVLETGLFNPAVTLVLWTASRARVGTVLLGVGMQLLATAGAFGIFWGNAQMSL 543
            MR  DEE A LVL+  R G S                 TQ  QSYGAFVKST+ SS+DT S +  D TSLPS+RLPRL E+WP+++EMLASY LGLA +SS+SSPWT+GL+FAGLAHAAST++VSGGA   GSYY+  NP+LT+GQL RG++SLPRAVL+  AQFLGITLA LT+  + G G  HA        +  LTSC    WG+ LFL ++F+SAF YV LAAWDSM+LALEACCSFYGLATGAAYA+A+ASVQSR ++SGLLNPW+G++G+I  A    + S  +  G  G      PS+MACDT+FILGP+LGALLG FLSWLTSL+GSEKE+ LR+LSPIAPLLVE +GVM+LV++LGAA +GW  GA ALALTLCAWRRSGAQFN S+TL IFLLKR+MFRWTSLLFY+LAH+ GALLG C LLLLPPSR+M   S+L+ PVVLG   ALLL  FTT YL VFVANTDAEYDEGFLHPALMVGLT+TGLLGA+A   D DVL TGL+NPAVTLV+W  +RA VGTVLLG  +QLLA+   F +FWG AQ+SL
Sbjct:    1 MRPGDEEEAPLVLSPRRGGPSPLAGGRAAWFGTSHNGATQEAQSYGAFVKSTDHSSMDTISHQVDDDTSLPSTRLPRLFENWPLLVEMLASYTLGLAAFSSNSSPWTVGLIFAGLAHAASTSAVSGGA---GSYYLQANPVLTLGQLVRGHLSLPRAVLYCGAQFLGITLACLTFATSTGGGAMHA--------VGSLTSCDALPWGHGLFLTTIFASAFAYVALAAWDSMSLALEACCSFYGLATGAAYAAAMASVQSRSISSGLLNPWVGLVGVISSALAPSAGSDHAGFGHNG------PSSMACDTVFILGPLLGALLGCFLSWLTSLHGSEKEAMLRALSPIAPLLVETVGVMFLVLSLGAAQQGWIPGAFALALTLCAWRRSGAQFNPSVTLAIFLLKRRMFRWTSLLFYILAHVAGALLGTCLLLLLPPSREMAAPSLLDTPVVLGLDEALLLLVFTTAYLAVFVANTDAEYDEGFLHPALMVGLTLTGLLGALA-GRDGDVLLTGLYNPAVTLVVWAVARASVGTVLLGASLQLLASGLVFALFWGKAQVSL 542
The following BLAST results are available for this feature:
BLAST of NO10G01500 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25387.11.200e-18865.54Aquaporin [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001021NSK001021Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G01500.1NO10G01500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586378gene_4066Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100005g101gene5127Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G01500.1NO10G01500.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G01500 ID=NO10G01500|Name=NO10G01500|organism=Nannochloropsis oceanica|type=gene|length=1977bp
AGCGTGCACAGGACGCAAGCTGTTGGTCTAGGGACAGCAGCAGCAGCAGC
AGCAGCCGGTGGGCATCATATCATGCGGCGCGAGGATGAGGAAAACGCGC
ACTTGGTTCTGAATTCCAATCGCAGCGGAGCTAGTACGCAACACCCGCAG
TCTTACGGTGCCTTTGTGAAGAGCACGAACCGCAGCAGCCTAGACACGGC
CTCGCTCCGCGGAGATGGGACCAGCCTTCCATCATCGCGGCTGCCCCGGC
TTCGCGAGCATTGGCCCGTCATAATGGAAATGTTGGCCTCCTATGTCCTC
GGCCTGGCAGGGTACAGCAGCCACAGCAGTCCATGGACAATGGGGCTCGT
TTTTGCGGGGCTGGCACACGCGGCGTCGACGGCGTCTGTAAGCGGGGGGG
CGAGCGCGAGCGGCTCTTATTATGTGTGCGGTAATCCTCTCTTGACCATG
GGTCAGCTGTGTCGAGGATATGTCAGCCTCCCCCGCGCCGTGCTTTTTTG
GAGCGCGCAATTTTTGGGGATTACCCTCGCAACGCTTACTTACACTGTGA
ATAATGGCCAGGGTCATGCCCATGCCGCGGTACCAGGGGGGCTGGGGGTG
ATCACACCACTCACTTCCTGCCAGACTCAATCATGGGGGAATGCCCTATT
TCTCCTTTCCCTTTTCTCCAGCGCCTTCGTGTACGTCGGCTTGGCCGCGT
GGGATTCCATGGCATTAGCACTGGAAGCATGCTGCTCGTTCTACGGACTT
GCTACAGGTGCTGCATACGCCTCTGCTGTAGCCTCGGTTCAAAGTCGAGG
GATGGCCTCGGGTCTCCTCAATCCCTGGATGGGAGTCTTAGGCTTGATAT
ATCACGCTACTACCTCCCCCTCAGCCTCCTCCGCGTCTCCTATCGGTCTT
GCTGGACATTCGACCTCTCTTGCTCCAAGCAACATGGCATGCGATACACT
CTTCATCCTAGGTCCGATCCTCGGGGCCCTCCTTGGCGTTTTTCTCTCAT
GGCTAACCAGCTTAAATGGCAGCGAGAAAGAAAGTTTTCTGCGCTCACTC
TCACCAATAGCGCCCCTGCTCGTCGAGATGCTTGGAGTGATGTACCTCGT
CGTCACCCTCGGCGCAGCACACCGAGGCTGGACAACAGGTGCTCTAGCCC
TCGCCCTTACTCTTTGTGCATGGCGTCGGTCTGGCGCTCAGTTTAATTCG
AGTATCACTCTGGTGATATTCTTGTTGAAGAGGCAGATGTTTCGGTGGAC
TTCCCTTCTCTTTTATGTACTCGCCCATTTGGTTGGGGCGTTGCTGGGTG
TGTGTTTCCTCTTGCTTCTTCCACCGTCGAGGGACATGCCCCCCGTTTCT
ATCCTAGAAGAGCCTGTGGTGTTGGGAGCACGGAATGCACTGTTGCTCTT
TGCATTCACGACTGTGTATTTATGTGTGTTTGTGGCCAACACAGACGCGG
AGTATGATGAGGGCTTTCTGCATCCGGCTTTGATGGTGGGGCTGACGATG
ACAGGTTTATTAGGGGCCATGGCTTGCAACAGTGACGCGGATGTGTTAGA
GACCGGGCTTTTCAACCCAGCGGTGACTCTGGTGTTGTGGACCGCGTCGA
GAGCCAGGGTAGGGACGGTGTTGCTGGGGGTGGGGATGCAGTTGTTGGCG
ACTGCGGGGGCCTTTGGTATCTTTTGGGGGAACGCCCAGATGTCGTTGTG
AGGTAATAGGAGGGAGACAGGCAGGCAGGGAGGCAGGGAGGGAGGCAGGG
AAGGAGGCAGTAAGTTGTGTATGTACTTGATATGGATGCTGGGAAGTCAA
CTCAAGAGACTGATTTTTTGTTTTATCTTGGGGCAGGCAAATAAGCAAGA
TAGAATGGGTAAGTAGACGAAATGTGACGACGAGAAGACGACGATGCTGC
CTTCGGCCTATTATGACCTAAAGCTCATTATTATTATATATATATAAGGA
CGACAGGAAAAAATGAAGTACCATCCT
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protein sequence of NO10G01500.1

>NO10G01500.1-protein ID=NO10G01500.1-protein|Name=NO10G01500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=543bp
MRREDEENAHLVLNSNRSGASTQHPQSYGAFVKSTNRSSLDTASLRGDGT
SLPSSRLPRLREHWPVIMEMLASYVLGLAGYSSHSSPWTMGLVFAGLAHA
ASTASVSGGASASGSYYVCGNPLLTMGQLCRGYVSLPRAVLFWSAQFLGI
TLATLTYTVNNGQGHAHAAVPGGLGVITPLTSCQTQSWGNALFLLSLFSS
AFVYVGLAAWDSMALALEACCSFYGLATGAAYASAVASVQSRGMASGLLN
PWMGVLGLIYHATTSPSASSASPIGLAGHSTSLAPSNMACDTLFILGPIL
GALLGVFLSWLTSLNGSEKESFLRSLSPIAPLLVEMLGVMYLVVTLGAAH
RGWTTGALALALTLCAWRRSGAQFNSSITLVIFLLKRQMFRWTSLLFYVL
AHLVGALLGVCFLLLLPPSRDMPPVSILEEPVVLGARNALLLFAFTTVYL
CVFVANTDAEYDEGFLHPALMVGLTMTGLLGAMACNSDADVLETGLFNPA
VTLVLWTASRARVGTVLLGVGMQLLATAGAFGIFWGNAQMSL*
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Synonyms
Publications