NO10G01500.1, NO10G01500.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G01500.1
Unique NameNO10G01500.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1977
Alignment locationchr10:432976..434952 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:432976..434952 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO10G01500.1 vs.
Match: EWM25387.1 (Aquaporin [Nannochloropsis gaditana])

HSP 1 Score: 669.1 bits (1725), Expect = 1.200e-188
Identity = 367/560 (65.54%), Postives = 433/560 (77.32%), Query Frame = 0
Query:    1 MRREDEENAHLVLNSNRSGAS-----------------TQHPQSYGAFVKSTNRSSLDTASLR-GDGTSLPSSRLPRLREHWPVIMEMLASYVLGLAGYSSHSSPWTMGLVFAGLAHAASTASVSGGASASGSYYVCGNPLLTMGQLCRGYVSLPRAVLFWSAQFLGITLATLTYTVNNGQGHAHAAVPGGLGVITPLTSCQTQSWGNALFLLSLFSSAFVYVGLAAWDSMALALEACCSFYGLATGAAYASAVASVQSRGMASGLLNPWMGVLGLIYHATTSPSASSASPIGLAGHSTSLAPSNMACDTLFILGPILGALLGVFLSWLTSLNGSEKESFLRSLSPIAPLLVEMLGVMYLVVTLGAAHRGWTTGALALALTLCAWRRSGAQFNSSITLVIFLLKRQMFRWTSLLFYVLAHLVGALLGVCFLLLLPPSRDMPPVSILEEPVVLGARNALLLFAFTTVYLCVFVANTDAEYDEGFLHPALMVGLTMTGLLGAMACNSDADVLETGLFNPAVTLVLWTASRARVGTVLLGVGMQLLATAGAFGIFWGNAQMSL 543
            MR  DEE A LVL+  R G S                 TQ  QSYGAFVKST+ SS+DT S +  D TSLPS+RLPRL E+WP+++EMLASY LGLA +SS+SSPWT+GL+FAGLAHAAST++VSGGA   GSYY+  NP+LT+GQL RG++SLPRAVL+  AQFLGITLA LT+  + G G  HA        +  LTSC    WG+ LFL ++F+SAF YV LAAWDSM+LALEACCSFYGLATGAAYA+A+ASVQSR ++SGLLNPW+G++G+I  A    + S  +  G  G      PS+MACDT+FILGP+LGALLG FLSWLTSL+GSEKE+ LR+LSPIAPLLVE +GVM+LV++LGAA +GW  GA ALALTLCAWRRSGAQFN S+TL IFLLKR+MFRWTSLLFY+LAH+ GALLG C LLLLPPSR+M   S+L+ PVVLG   ALLL  FTT YL VFVANTDAEYDEGFLHPALMVGLT+TGLLGA+A   D DVL TGL+NPAVTLV+W  +RA VGTVLLG  +QLLA+   F +FWG AQ+SL
Sbjct:    1 MRPGDEEEAPLVLSPRRGGPSPLAGGRAAWFGTSHNGATQEAQSYGAFVKSTDHSSMDTISHQVDDDTSLPSTRLPRLFENWPLLVEMLASYTLGLAAFSSNSSPWTVGLIFAGLAHAASTSAVSGGA---GSYYLQANPVLTLGQLVRGHLSLPRAVLYCGAQFLGITLACLTFATSTGGGAMHA--------VGSLTSCDALPWGHGLFLTTIFASAFAYVALAAWDSMSLALEACCSFYGLATGAAYAAAMASVQSRSISSGLLNPWVGLVGVISSALAPSAGSDHAGFGHNG------PSSMACDTVFILGPLLGALLGCFLSWLTSLHGSEKEAMLRALSPIAPLLVETVGVMFLVLSLGAAQQGWIPGAFALALTLCAWRRSGAQFNPSVTLAIFLLKRRMFRWTSLLFYILAHVAGALLGTCLLLLLPPSREMAAPSLLDTPVVLGLDEALLLLVFTTAYLAVFVANTDAEYDEGFLHPALMVGLTLTGLLGALA-GRDGDVLLTGLYNPAVTLVVWAVARASVGTVLLGASLQLLASGLVFALFWGKAQVSL 542          
The following BLAST results are available for this feature:
BLAST of NO10G01500.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25387.11.200e-18865.54Aquaporin [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G01500NO10G01500Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G01500.1NO10G01500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G01500.1.cds1NO10G01500.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G01500.1 ID=NO10G01500.1|Name=NO10G01500.1|organism=Nannochloropsis oceanica|type=mRNA|length=1977bp
AGCGTGCACAGGACGCAAGCTGTTGGTCTAGGGACAGCAGCAGCAGCAGC
AGCAGCCGGTGGGCATCATATCATGCGGCGCGAGGATGAGGAAAACGCGC
ACTTGGTTCTGAATTCCAATCGCAGCGGAGCTAGTACGCAACACCCGCAG
TCTTACGGTGCCTTTGTGAAGAGCACGAACCGCAGCAGCCTAGACACGGC
CTCGCTCCGCGGAGATGGGACCAGCCTTCCATCATCGCGGCTGCCCCGGC
TTCGCGAGCATTGGCCCGTCATAATGGAAATGTTGGCCTCCTATGTCCTC
GGCCTGGCAGGGTACAGCAGCCACAGCAGTCCATGGACAATGGGGCTCGT
TTTTGCGGGGCTGGCACACGCGGCGTCGACGGCGTCTGTAAGCGGGGGGG
CGAGCGCGAGCGGCTCTTATTATGTGTGCGGTAATCCTCTCTTGACCATG
GGTCAGCTGTGTCGAGGATATGTCAGCCTCCCCCGCGCCGTGCTTTTTTG
GAGCGCGCAATTTTTGGGGATTACCCTCGCAACGCTTACTTACACTGTGA
ATAATGGCCAGGGTCATGCCCATGCCGCGGTACCAGGGGGGCTGGGGGTG
ATCACACCACTCACTTCCTGCCAGACTCAATCATGGGGGAATGCCCTATT
TCTCCTTTCCCTTTTCTCCAGCGCCTTCGTGTACGTCGGCTTGGCCGCGT
GGGATTCCATGGCATTAGCACTGGAAGCATGCTGCTCGTTCTACGGACTT
GCTACAGGTGCTGCATACGCCTCTGCTGTAGCCTCGGTTCAAAGTCGAGG
GATGGCCTCGGGTCTCCTCAATCCCTGGATGGGAGTCTTAGGCTTGATAT
ATCACGCTACTACCTCCCCCTCAGCCTCCTCCGCGTCTCCTATCGGTCTT
GCTGGACATTCGACCTCTCTTGCTCCAAGCAACATGGCATGCGATACACT
CTTCATCCTAGGTCCGATCCTCGGGGCCCTCCTTGGCGTTTTTCTCTCAT
GGCTAACCAGCTTAAATGGCAGCGAGAAAGAAAGTTTTCTGCGCTCACTC
TCACCAATAGCGCCCCTGCTCGTCGAGATGCTTGGAGTGATGTACCTCGT
CGTCACCCTCGGCGCAGCACACCGAGGCTGGACAACAGGTGCTCTAGCCC
TCGCCCTTACTCTTTGTGCATGGCGTCGGTCTGGCGCTCAGTTTAATTCG
AGTATCACTCTGGTGATATTCTTGTTGAAGAGGCAGATGTTTCGGTGGAC
TTCCCTTCTCTTTTATGTACTCGCCCATTTGGTTGGGGCGTTGCTGGGTG
TGTGTTTCCTCTTGCTTCTTCCACCGTCGAGGGACATGCCCCCCGTTTCT
ATCCTAGAAGAGCCTGTGGTGTTGGGAGCACGGAATGCACTGTTGCTCTT
TGCATTCACGACTGTGTATTTATGTGTGTTTGTGGCCAACACAGACGCGG
AGTATGATGAGGGCTTTCTGCATCCGGCTTTGATGGTGGGGCTGACGATG
ACAGGTTTATTAGGGGCCATGGCTTGCAACAGTGACGCGGATGTGTTAGA
GACCGGGCTTTTCAACCCAGCGGTGACTCTGGTGTTGTGGACCGCGTCGA
GAGCCAGGGTAGGGACGGTGTTGCTGGGGGTGGGGATGCAGTTGTTGGCG
ACTGCGGGGGCCTTTGGTATCTTTTGGGGGAACGCCCAGATGTCGTTGTG
AGGTAATAGGAGGGAGACAGGCAGGCAGGGAGGCAGGGAGGGAGGCAGGG
AAGGAGGCAGTAAGTTGTGTATGTACTTGATATGGATGCTGGGAAGTCAA
CTCAAGAGACTGATTTTTTGTTTTATCTTGGGGCAGGCAAATAAGCAAGA
TAGAATGGGTAAGTAGACGAAATGTGACGACGAGAAGACGACGATGCTGC
CTTCGGCCTATTATGACCTAAAGCTCATTATTATTATATATATATAAGGA
CGACAGGAAAAAATGAAGTACCATCCT
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protein sequence of NO10G01500.1

>NO10G01500.1-protein ID=NO10G01500.1-protein|Name=NO10G01500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=543bp
MRREDEENAHLVLNSNRSGASTQHPQSYGAFVKSTNRSSLDTASLRGDGT
SLPSSRLPRLREHWPVIMEMLASYVLGLAGYSSHSSPWTMGLVFAGLAHA
ASTASVSGGASASGSYYVCGNPLLTMGQLCRGYVSLPRAVLFWSAQFLGI
TLATLTYTVNNGQGHAHAAVPGGLGVITPLTSCQTQSWGNALFLLSLFSS
AFVYVGLAAWDSMALALEACCSFYGLATGAAYASAVASVQSRGMASGLLN
PWMGVLGLIYHATTSPSASSASPIGLAGHSTSLAPSNMACDTLFILGPIL
GALLGVFLSWLTSLNGSEKESFLRSLSPIAPLLVEMLGVMYLVVTLGAAH
RGWTTGALALALTLCAWRRSGAQFNSSITLVIFLLKRQMFRWTSLLFYVL
AHLVGALLGVCFLLLLPPSRDMPPVSILEEPVVLGARNALLLFAFTTVYL
CVFVANTDAEYDEGFLHPALMVGLTMTGLLGAMACNSDADVLETGLFNPA
VTLVLWTASRARVGTVLLGVGMQLLATAGAFGIFWGNAQMSL*
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mRNA from alignment at chr10:432976..434952+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G01500.1 ID=NO10G01500.1|Name=NO10G01500.1|organism=Nannochloropsis oceanica|type=mRNA|length=1977bp|location=Sequence derived from alignment at chr10:432976..434952+ (Nannochloropsis oceanica)
AGCGTGCACAGGACGCAAGCTGTTGGTCTAGGGACAGCAGCAGCAGCAGC AGCAGCCGGTGGGCATCATATCATGCGGCGCGAGGATGAGGAAAACGCGC ACTTGGTTCTGAATTCCAATCGCAGCGGAGCTAGTACGCAACACCCGCAG TCTTACGGTGCCTTTGTGAAGAGCACGAACCGCAGCAGCCTAGACACGGC CTCGCTCCGCGGAGATGGGACCAGCCTTCCATCATCGCGGCTGCCCCGGC TTCGCGAGCATTGGCCCGTCATAATGGAAATGTTGGCCTCCTATGTCCTC GGCCTGGCAGGGTACAGCAGCCACAGCAGTCCATGGACAATGGGGCTCGT TTTTGCGGGGCTGGCACACGCGGCGTCGACGGCGTCTGTAAGCGGGGGGG CGAGCGCGAGCGGCTCTTATTATGTGTGCGGTAATCCTCTCTTGACCATG GGTCAGCTGTGTCGAGGATATGTCAGCCTCCCCCGCGCCGTGCTTTTTTG GAGCGCGCAATTTTTGGGGATTACCCTCGCAACGCTTACTTACACTGTGA ATAATGGCCAGGGTCATGCCCATGCCGCGGTACCAGGGGGGCTGGGGGTG ATCACACCACTCACTTCCTGCCAGACTCAATCATGGGGGAATGCCCTATT TCTCCTTTCCCTTTTCTCCAGCGCCTTCGTGTACGTCGGCTTGGCCGCGT GGGATTCCATGGCATTAGCACTGGAAGCATGCTGCTCGTTCTACGGACTT GCTACAGGTGCTGCATACGCCTCTGCTGTAGCCTCGGTTCAAAGTCGAGG GATGGCCTCGGGTCTCCTCAATCCCTGGATGGGAGTCTTAGGCTTGATAT ATCACGCTACTACCTCCCCCTCAGCCTCCTCCGCGTCTCCTATCGGTCTT GCTGGACATTCGACCTCTCTTGCTCCAAGCAACATGGCATGCGATACACT CTTCATCCTAGGTCCGATCCTCGGGGCCCTCCTTGGCGTTTTTCTCTCAT GGCTAACCAGCTTAAATGGCAGCGAGAAAGAAAGTTTTCTGCGCTCACTC TCACCAATAGCGCCCCTGCTCGTCGAGATGCTTGGAGTGATGTACCTCGT CGTCACCCTCGGCGCAGCACACCGAGGCTGGACAACAGGTGCTCTAGCCC TCGCCCTTACTCTTTGTGCATGGCGTCGGTCTGGCGCTCAGTTTAATTCG AGTATCACTCTGGTGATATTCTTGTTGAAGAGGCAGATGTTTCGGTGGAC TTCCCTTCTCTTTTATGTACTCGCCCATTTGGTTGGGGCGTTGCTGGGTG TGTGTTTCCTCTTGCTTCTTCCACCGTCGAGGGACATGCCCCCCGTTTCT ATCCTAGAAGAGCCTGTGGTGTTGGGAGCACGGAATGCACTGTTGCTCTT TGCATTCACGACTGTGTATTTATGTGTGTTTGTGGCCAACACAGACGCGG AGTATGATGAGGGCTTTCTGCATCCGGCTTTGATGGTGGGGCTGACGATG ACAGGTTTATTAGGGGCCATGGCTTGCAACAGTGACGCGGATGTGTTAGA GACCGGGCTTTTCAACCCAGCGGTGACTCTGGTGTTGTGGACCGCGTCGA GAGCCAGGGTAGGGACGGTGTTGCTGGGGGTGGGGATGCAGTTGTTGGCG ACTGCGGGGGCCTTTGGTATCTTTTGGGGGAACGCCCAGATGTCGTTGTG AGGTAATAGGAGGGAGACAGGCAGGCAGGGAGGCAGGGAGGGAGGCAGGG AAGGAGGCAGTAAGTTGTGTATGTACTTGATATGGATGCTGGGAAGTCAA CTCAAGAGACTGATTTTTTGTTTTATCTTGGGGCAGGCAAATAAGCAAGA TAGAATGGGTAAGTAGACGAAATGTGACGACGAGAAGACGACGATGCTGC CTTCGGCCTATTATGACCTAAAGCTCATTATTATTATATATATATAAGGA CGACAGGAAAAAATGAAGTACCATCCT
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Coding sequence (CDS) from alignment at chr10:432976..434952+

>NO10G01500.1 ID=NO10G01500.1|Name=NO10G01500.1|organism=Nannochloropsis oceanica|type=CDS|length=1629bp|location=Sequence derived from alignment at chr10:432976..434952+ (Nannochloropsis oceanica)
ATGCGGCGCGAGGATGAGGAAAACGCGCACTTGGTTCTGAATTCCAATCG
CAGCGGAGCTAGTACGCAACACCCGCAGTCTTACGGTGCCTTTGTGAAGA
GCACGAACCGCAGCAGCCTAGACACGGCCTCGCTCCGCGGAGATGGGACC
AGCCTTCCATCATCGCGGCTGCCCCGGCTTCGCGAGCATTGGCCCGTCAT
AATGGAAATGTTGGCCTCCTATGTCCTCGGCCTGGCAGGGTACAGCAGCC
ACAGCAGTCCATGGACAATGGGGCTCGTTTTTGCGGGGCTGGCACACGCG
GCGTCGACGGCGTCTGTAAGCGGGGGGGCGAGCGCGAGCGGCTCTTATTA
TGTGTGCGGTAATCCTCTCTTGACCATGGGTCAGCTGTGTCGAGGATATG
TCAGCCTCCCCCGCGCCGTGCTTTTTTGGAGCGCGCAATTTTTGGGGATT
ACCCTCGCAACGCTTACTTACACTGTGAATAATGGCCAGGGTCATGCCCA
TGCCGCGGTACCAGGGGGGCTGGGGGTGATCACACCACTCACTTCCTGCC
AGACTCAATCATGGGGGAATGCCCTATTTCTCCTTTCCCTTTTCTCCAGC
GCCTTCGTGTACGTCGGCTTGGCCGCGTGGGATTCCATGGCATTAGCACT
GGAAGCATGCTGCTCGTTCTACGGACTTGCTACAGGTGCTGCATACGCCT
CTGCTGTAGCCTCGGTTCAAAGTCGAGGGATGGCCTCGGGTCTCCTCAAT
CCCTGGATGGGAGTCTTAGGCTTGATATATCACGCTACTACCTCCCCCTC
AGCCTCCTCCGCGTCTCCTATCGGTCTTGCTGGACATTCGACCTCTCTTG
CTCCAAGCAACATGGCATGCGATACACTCTTCATCCTAGGTCCGATCCTC
GGGGCCCTCCTTGGCGTTTTTCTCTCATGGCTAACCAGCTTAAATGGCAG
CGAGAAAGAAAGTTTTCTGCGCTCACTCTCACCAATAGCGCCCCTGCTCG
TCGAGATGCTTGGAGTGATGTACCTCGTCGTCACCCTCGGCGCAGCACAC
CGAGGCTGGACAACAGGTGCTCTAGCCCTCGCCCTTACTCTTTGTGCATG
GCGTCGGTCTGGCGCTCAGTTTAATTCGAGTATCACTCTGGTGATATTCT
TGTTGAAGAGGCAGATGTTTCGGTGGACTTCCCTTCTCTTTTATGTACTC
GCCCATTTGGTTGGGGCGTTGCTGGGTGTGTGTTTCCTCTTGCTTCTTCC
ACCGTCGAGGGACATGCCCCCCGTTTCTATCCTAGAAGAGCCTGTGGTGT
TGGGAGCACGGAATGCACTGTTGCTCTTTGCATTCACGACTGTGTATTTA
TGTGTGTTTGTGGCCAACACAGACGCGGAGTATGATGAGGGCTTTCTGCA
TCCGGCTTTGATGGTGGGGCTGACGATGACAGGTTTATTAGGGGCCATGG
CTTGCAACAGTGACGCGGATGTGTTAGAGACCGGGCTTTTCAACCCAGCG
GTGACTCTGGTGTTGTGGACCGCGTCGAGAGCCAGGGTAGGGACGGTGTT
GCTGGGGGTGGGGATGCAGTTGTTGGCGACTGCGGGGGCCTTTGGTATCT
TTTGGGGGAACGCCCAGATGTCGTTGTGA
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Synonyms
Publications