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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr10 | genome | chr10:432976..434952 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO10G01500.1 vs.
Match: EWM25387.1 (Aquaporin [Nannochloropsis gaditana]) HSP 1 Score: 669.1 bits (1725), Expect = 1.200e-188 Identity = 367/560 (65.54%), Postives = 433/560 (77.32%), Query Frame = 0
Query: 1 MRREDEENAHLVLNSNRSGAS-----------------TQHPQSYGAFVKSTNRSSLDTASLR-GDGTSLPSSRLPRLREHWPVIMEMLASYVLGLAGYSSHSSPWTMGLVFAGLAHAASTASVSGGASASGSYYVCGNPLLTMGQLCRGYVSLPRAVLFWSAQFLGITLATLTYTVNNGQGHAHAAVPGGLGVITPLTSCQTQSWGNALFLLSLFSSAFVYVGLAAWDSMALALEACCSFYGLATGAAYASAVASVQSRGMASGLLNPWMGVLGLIYHATTSPSASSASPIGLAGHSTSLAPSNMACDTLFILGPILGALLGVFLSWLTSLNGSEKESFLRSLSPIAPLLVEMLGVMYLVVTLGAAHRGWTTGALALALTLCAWRRSGAQFNSSITLVIFLLKRQMFRWTSLLFYVLAHLVGALLGVCFLLLLPPSRDMPPVSILEEPVVLGARNALLLFAFTTVYLCVFVANTDAEYDEGFLHPALMVGLTMTGLLGAMACNSDADVLETGLFNPAVTLVLWTASRARVGTVLLGVGMQLLATAGAFGIFWGNAQMSL 543
MR DEE A LVL+ R G S TQ QSYGAFVKST+ SS+DT S + D TSLPS+RLPRL E+WP+++EMLASY LGLA +SS+SSPWT+GL+FAGLAHAAST++VSGGA GSYY+ NP+LT+GQL RG++SLPRAVL+ AQFLGITLA LT+ + G G HA + LTSC WG+ LFL ++F+SAF YV LAAWDSM+LALEACCSFYGLATGAAYA+A+ASVQSR ++SGLLNPW+G++G+I A + S + G G PS+MACDT+FILGP+LGALLG FLSWLTSL+GSEKE+ LR+LSPIAPLLVE +GVM+LV++LGAA +GW GA ALALTLCAWRRSGAQFN S+TL IFLLKR+MFRWTSLLFY+LAH+ GALLG C LLLLPPSR+M S+L+ PVVLG ALLL FTT YL VFVANTDAEYDEGFLHPALMVGLT+TGLLGA+A D DVL TGL+NPAVTLV+W +RA VGTVLLG +QLLA+ F +FWG AQ+SL
Sbjct: 1 MRPGDEEEAPLVLSPRRGGPSPLAGGRAAWFGTSHNGATQEAQSYGAFVKSTDHSSMDTISHQVDDDTSLPSTRLPRLFENWPLLVEMLASYTLGLAAFSSNSSPWTVGLIFAGLAHAASTSAVSGGA---GSYYLQANPVLTLGQLVRGHLSLPRAVLYCGAQFLGITLACLTFATSTGGGAMHA--------VGSLTSCDALPWGHGLFLTTIFASAFAYVALAAWDSMSLALEACCSFYGLATGAAYAAAMASVQSRSISSGLLNPWVGLVGVISSALAPSAGSDHAGFGHNG------PSSMACDTVFILGPLLGALLGCFLSWLTSLHGSEKEAMLRALSPIAPLLVETVGVMFLVLSLGAAQQGWIPGAFALALTLCAWRRSGAQFNPSVTLAIFLLKRRMFRWTSLLFYILAHVAGALLGTCLLLLLPPSREMAAPSLLDTPVVLGLDEALLLLVFTTAYLAVFVANTDAEYDEGFLHPALMVGLTLTGLLGALA-GRDGDVLLTGLYNPAVTLVVWAVARASVGTVLLGASLQLLASGLVFALFWGKAQVSL 542
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO10G01500.1 ID=NO10G01500.1|Name=NO10G01500.1|organism=Nannochloropsis oceanica|type=mRNA|length=1977bp AGCGTGCACAGGACGCAAGCTGTTGGTCTAGGGACAGCAGCAGCAGCAGC AGCAGCCGGTGGGCATCATATCATGCGGCGCGAGGATGAGGAAAACGCGC ACTTGGTTCTGAATTCCAATCGCAGCGGAGCTAGTACGCAACACCCGCAG TCTTACGGTGCCTTTGTGAAGAGCACGAACCGCAGCAGCCTAGACACGGC CTCGCTCCGCGGAGATGGGACCAGCCTTCCATCATCGCGGCTGCCCCGGC TTCGCGAGCATTGGCCCGTCATAATGGAAATGTTGGCCTCCTATGTCCTC GGCCTGGCAGGGTACAGCAGCCACAGCAGTCCATGGACAATGGGGCTCGT TTTTGCGGGGCTGGCACACGCGGCGTCGACGGCGTCTGTAAGCGGGGGGG CGAGCGCGAGCGGCTCTTATTATGTGTGCGGTAATCCTCTCTTGACCATG GGTCAGCTGTGTCGAGGATATGTCAGCCTCCCCCGCGCCGTGCTTTTTTG GAGCGCGCAATTTTTGGGGATTACCCTCGCAACGCTTACTTACACTGTGA ATAATGGCCAGGGTCATGCCCATGCCGCGGTACCAGGGGGGCTGGGGGTG ATCACACCACTCACTTCCTGCCAGACTCAATCATGGGGGAATGCCCTATT TCTCCTTTCCCTTTTCTCCAGCGCCTTCGTGTACGTCGGCTTGGCCGCGT GGGATTCCATGGCATTAGCACTGGAAGCATGCTGCTCGTTCTACGGACTT GCTACAGGTGCTGCATACGCCTCTGCTGTAGCCTCGGTTCAAAGTCGAGG GATGGCCTCGGGTCTCCTCAATCCCTGGATGGGAGTCTTAGGCTTGATAT ATCACGCTACTACCTCCCCCTCAGCCTCCTCCGCGTCTCCTATCGGTCTT GCTGGACATTCGACCTCTCTTGCTCCAAGCAACATGGCATGCGATACACT CTTCATCCTAGGTCCGATCCTCGGGGCCCTCCTTGGCGTTTTTCTCTCAT GGCTAACCAGCTTAAATGGCAGCGAGAAAGAAAGTTTTCTGCGCTCACTC TCACCAATAGCGCCCCTGCTCGTCGAGATGCTTGGAGTGATGTACCTCGT CGTCACCCTCGGCGCAGCACACCGAGGCTGGACAACAGGTGCTCTAGCCC TCGCCCTTACTCTTTGTGCATGGCGTCGGTCTGGCGCTCAGTTTAATTCG AGTATCACTCTGGTGATATTCTTGTTGAAGAGGCAGATGTTTCGGTGGAC TTCCCTTCTCTTTTATGTACTCGCCCATTTGGTTGGGGCGTTGCTGGGTG TGTGTTTCCTCTTGCTTCTTCCACCGTCGAGGGACATGCCCCCCGTTTCT ATCCTAGAAGAGCCTGTGGTGTTGGGAGCACGGAATGCACTGTTGCTCTT TGCATTCACGACTGTGTATTTATGTGTGTTTGTGGCCAACACAGACGCGG AGTATGATGAGGGCTTTCTGCATCCGGCTTTGATGGTGGGGCTGACGATG ACAGGTTTATTAGGGGCCATGGCTTGCAACAGTGACGCGGATGTGTTAGA GACCGGGCTTTTCAACCCAGCGGTGACTCTGGTGTTGTGGACCGCGTCGA GAGCCAGGGTAGGGACGGTGTTGCTGGGGGTGGGGATGCAGTTGTTGGCG ACTGCGGGGGCCTTTGGTATCTTTTGGGGGAACGCCCAGATGTCGTTGTG AGGTAATAGGAGGGAGACAGGCAGGCAGGGAGGCAGGGAGGGAGGCAGGG AAGGAGGCAGTAAGTTGTGTATGTACTTGATATGGATGCTGGGAAGTCAA CTCAAGAGACTGATTTTTTGTTTTATCTTGGGGCAGGCAAATAAGCAAGA TAGAATGGGTAAGTAGACGAAATGTGACGACGAGAAGACGACGATGCTGC CTTCGGCCTATTATGACCTAAAGCTCATTATTATTATATATATATAAGGA CGACAGGAAAAAATGAAGTACCATCCT back to topprotein sequence of NO10G01500.1 >NO10G01500.1-protein ID=NO10G01500.1-protein|Name=NO10G01500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=543bp MRREDEENAHLVLNSNRSGASTQHPQSYGAFVKSTNRSSLDTASLRGDGT SLPSSRLPRLREHWPVIMEMLASYVLGLAGYSSHSSPWTMGLVFAGLAHA ASTASVSGGASASGSYYVCGNPLLTMGQLCRGYVSLPRAVLFWSAQFLGI TLATLTYTVNNGQGHAHAAVPGGLGVITPLTSCQTQSWGNALFLLSLFSS AFVYVGLAAWDSMALALEACCSFYGLATGAAYASAVASVQSRGMASGLLN PWMGVLGLIYHATTSPSASSASPIGLAGHSTSLAPSNMACDTLFILGPIL GALLGVFLSWLTSLNGSEKESFLRSLSPIAPLLVEMLGVMYLVVTLGAAH RGWTTGALALALTLCAWRRSGAQFNSSITLVIFLLKRQMFRWTSLLFYVL AHLVGALLGVCFLLLLPPSRDMPPVSILEEPVVLGARNALLLFAFTTVYL CVFVANTDAEYDEGFLHPALMVGLTMTGLLGAMACNSDADVLETGLFNPA VTLVLWTASRARVGTVLLGVGMQLLATAGAFGIFWGNAQMSL* back to topmRNA from alignment at chr10:432976..434952+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO10G01500.1 ID=NO10G01500.1|Name=NO10G01500.1|organism=Nannochloropsis oceanica|type=mRNA|length=1977bp|location=Sequence derived from alignment at chr10:432976..434952+ (Nannochloropsis oceanica) AGCGTGCACAGGACGCAAGCTGTTGGTCTAGGGACAGCAGCAGCAGCAGC
AGCAGCCGGTGGGCATCATATCATGCGGCGCGAGGATGAGGAAAACGCGC
ACTTGGTTCTGAATTCCAATCGCAGCGGAGCTAGTACGCAACACCCGCAG
TCTTACGGTGCCTTTGTGAAGAGCACGAACCGCAGCAGCCTAGACACGGC
CTCGCTCCGCGGAGATGGGACCAGCCTTCCATCATCGCGGCTGCCCCGGC
TTCGCGAGCATTGGCCCGTCATAATGGAAATGTTGGCCTCCTATGTCCTC
GGCCTGGCAGGGTACAGCAGCCACAGCAGTCCATGGACAATGGGGCTCGT
TTTTGCGGGGCTGGCACACGCGGCGTCGACGGCGTCTGTAAGCGGGGGGG
CGAGCGCGAGCGGCTCTTATTATGTGTGCGGTAATCCTCTCTTGACCATG
GGTCAGCTGTGTCGAGGATATGTCAGCCTCCCCCGCGCCGTGCTTTTTTG
GAGCGCGCAATTTTTGGGGATTACCCTCGCAACGCTTACTTACACTGTGA
ATAATGGCCAGGGTCATGCCCATGCCGCGGTACCAGGGGGGCTGGGGGTG
ATCACACCACTCACTTCCTGCCAGACTCAATCATGGGGGAATGCCCTATT
TCTCCTTTCCCTTTTCTCCAGCGCCTTCGTGTACGTCGGCTTGGCCGCGT
GGGATTCCATGGCATTAGCACTGGAAGCATGCTGCTCGTTCTACGGACTT
GCTACAGGTGCTGCATACGCCTCTGCTGTAGCCTCGGTTCAAAGTCGAGG
GATGGCCTCGGGTCTCCTCAATCCCTGGATGGGAGTCTTAGGCTTGATAT
ATCACGCTACTACCTCCCCCTCAGCCTCCTCCGCGTCTCCTATCGGTCTT
GCTGGACATTCGACCTCTCTTGCTCCAAGCAACATGGCATGCGATACACT
CTTCATCCTAGGTCCGATCCTCGGGGCCCTCCTTGGCGTTTTTCTCTCAT
GGCTAACCAGCTTAAATGGCAGCGAGAAAGAAAGTTTTCTGCGCTCACTC
TCACCAATAGCGCCCCTGCTCGTCGAGATGCTTGGAGTGATGTACCTCGT
CGTCACCCTCGGCGCAGCACACCGAGGCTGGACAACAGGTGCTCTAGCCC
TCGCCCTTACTCTTTGTGCATGGCGTCGGTCTGGCGCTCAGTTTAATTCG
AGTATCACTCTGGTGATATTCTTGTTGAAGAGGCAGATGTTTCGGTGGAC
TTCCCTTCTCTTTTATGTACTCGCCCATTTGGTTGGGGCGTTGCTGGGTG
TGTGTTTCCTCTTGCTTCTTCCACCGTCGAGGGACATGCCCCCCGTTTCT
ATCCTAGAAGAGCCTGTGGTGTTGGGAGCACGGAATGCACTGTTGCTCTT
TGCATTCACGACTGTGTATTTATGTGTGTTTGTGGCCAACACAGACGCGG
AGTATGATGAGGGCTTTCTGCATCCGGCTTTGATGGTGGGGCTGACGATG
ACAGGTTTATTAGGGGCCATGGCTTGCAACAGTGACGCGGATGTGTTAGA
GACCGGGCTTTTCAACCCAGCGGTGACTCTGGTGTTGTGGACCGCGTCGA
GAGCCAGGGTAGGGACGGTGTTGCTGGGGGTGGGGATGCAGTTGTTGGCG
ACTGCGGGGGCCTTTGGTATCTTTTGGGGGAACGCCCAGATGTCGTTGTG
AGGTAATAGGAGGGAGACAGGCAGGCAGGGAGGCAGGGAGGGAGGCAGGG
AAGGAGGCAGTAAGTTGTGTATGTACTTGATATGGATGCTGGGAAGTCAA
CTCAAGAGACTGATTTTTTGTTTTATCTTGGGGCAGGCAAATAAGCAAGA
TAGAATGGGTAAGTAGACGAAATGTGACGACGAGAAGACGACGATGCTGC
CTTCGGCCTATTATGACCTAAAGCTCATTATTATTATATATATATAAGGA
CGACAGGAAAAAATGAAGTACCATCCT back to topCoding sequence (CDS) from alignment at chr10:432976..434952+ >NO10G01500.1 ID=NO10G01500.1|Name=NO10G01500.1|organism=Nannochloropsis oceanica|type=CDS|length=1629bp|location=Sequence derived from alignment at chr10:432976..434952+ (Nannochloropsis oceanica) ATGCGGCGCGAGGATGAGGAAAACGCGCACTTGGTTCTGAATTCCAATCG CAGCGGAGCTAGTACGCAACACCCGCAGTCTTACGGTGCCTTTGTGAAGA GCACGAACCGCAGCAGCCTAGACACGGCCTCGCTCCGCGGAGATGGGACC AGCCTTCCATCATCGCGGCTGCCCCGGCTTCGCGAGCATTGGCCCGTCAT AATGGAAATGTTGGCCTCCTATGTCCTCGGCCTGGCAGGGTACAGCAGCC ACAGCAGTCCATGGACAATGGGGCTCGTTTTTGCGGGGCTGGCACACGCG GCGTCGACGGCGTCTGTAAGCGGGGGGGCGAGCGCGAGCGGCTCTTATTA TGTGTGCGGTAATCCTCTCTTGACCATGGGTCAGCTGTGTCGAGGATATG TCAGCCTCCCCCGCGCCGTGCTTTTTTGGAGCGCGCAATTTTTGGGGATT ACCCTCGCAACGCTTACTTACACTGTGAATAATGGCCAGGGTCATGCCCA TGCCGCGGTACCAGGGGGGCTGGGGGTGATCACACCACTCACTTCCTGCC AGACTCAATCATGGGGGAATGCCCTATTTCTCCTTTCCCTTTTCTCCAGC GCCTTCGTGTACGTCGGCTTGGCCGCGTGGGATTCCATGGCATTAGCACT GGAAGCATGCTGCTCGTTCTACGGACTTGCTACAGGTGCTGCATACGCCT CTGCTGTAGCCTCGGTTCAAAGTCGAGGGATGGCCTCGGGTCTCCTCAAT CCCTGGATGGGAGTCTTAGGCTTGATATATCACGCTACTACCTCCCCCTC AGCCTCCTCCGCGTCTCCTATCGGTCTTGCTGGACATTCGACCTCTCTTG CTCCAAGCAACATGGCATGCGATACACTCTTCATCCTAGGTCCGATCCTC GGGGCCCTCCTTGGCGTTTTTCTCTCATGGCTAACCAGCTTAAATGGCAG CGAGAAAGAAAGTTTTCTGCGCTCACTCTCACCAATAGCGCCCCTGCTCG TCGAGATGCTTGGAGTGATGTACCTCGTCGTCACCCTCGGCGCAGCACAC CGAGGCTGGACAACAGGTGCTCTAGCCCTCGCCCTTACTCTTTGTGCATG GCGTCGGTCTGGCGCTCAGTTTAATTCGAGTATCACTCTGGTGATATTCT TGTTGAAGAGGCAGATGTTTCGGTGGACTTCCCTTCTCTTTTATGTACTC GCCCATTTGGTTGGGGCGTTGCTGGGTGTGTGTTTCCTCTTGCTTCTTCC ACCGTCGAGGGACATGCCCCCCGTTTCTATCCTAGAAGAGCCTGTGGTGT TGGGAGCACGGAATGCACTGTTGCTCTTTGCATTCACGACTGTGTATTTA TGTGTGTTTGTGGCCAACACAGACGCGGAGTATGATGAGGGCTTTCTGCA TCCGGCTTTGATGGTGGGGCTGACGATGACAGGTTTATTAGGGGCCATGG CTTGCAACAGTGACGCGGATGTGTTAGAGACCGGGCTTTTCAACCCAGCG GTGACTCTGGTGTTGTGGACCGCGTCGAGAGCCAGGGTAGGGACGGTGTT GCTGGGGGTGGGGATGCAGTTGTTGGCGACTGCGGGGGCCTTTGGTATCT TTTGGGGGAACGCCCAGATGTCGTTGTGA back to top
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