NO10G01450, NO10G01450 (gene) Nannochloropsis oceanica

Overview
NameNO10G01450
Unique NameNO10G01450
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length717
Alignment locationchr10:422031..422747 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:422031..422747 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO10G01450 vs. NCBI_GenBank
Match: EWM25345.1 (hypothetical protein Naga_100005g107 [Nannochloropsis gaditana])

HSP 1 Score: 295.4 bits (755), Expect = 1.600e-76
Identity = 187/241 (77.59%), Postives = 203/241 (84.23%), Query Frame = 0 
Query:    2 LISLLSCSLVSGFLV---PSPASAVSPLRASAAVMAATAEPVVEALAGKKPEYVLMEDASGRSINTTMLAFLKQDGKRYCLGTPVDSPMVLMDSGGRPIDPSDELAEKMFYQLDDYFTNKGYEILHTAGFLTIAGDPDWF-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAQAARSAAARGENSVRVDPICDVEFDGSMYRVVQLLDRVPLSAEEDGEGKWRLVSDSETHLGLEKMAKK 239
            L SL+SCSLV  FLV   P       PLR S+AV+A+ +EPVVEALAG+KPEY+LMED  GRSINTTM+A+L+QDGKRYCLGTPVDSPMVLMDSGGRPIDPS  LAE MFYQLDDYFTNKGYEILHTAGFLTIAG+PDWF XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX              SVRVDPICDVE+DGSMYR+VQLLDRVPLSAEED EGKW LV+D++THLGLEK AKK
Sbjct:    6 LTSLVSCSLVQAFLVPVAPGMGRPREPLRPSSAVLASASEPVVEALAGRKPEYILMEDGHGRSINTTMIAYLRQDGKRYCLGTPVDSPMVLMDSGGRPIDPSSALAEGMFYQLDDYFTNKGYEILHTAGFLTIAGEPDWFDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVRVDPICDVEYDGSMYRIVQLLDRVPLSAEEDAEGKWVLVNDADTHLGLEKRAKK 246
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BLAST of NO10G01450 vs. NCBI_GenBank
Match: XP_005852583.1 (hypothetical protein NGA_0098202 [Nannochloropsis gaditana CCMP526] >EKU23246.1 hypothetical protein NGA_0098202 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 293.5 bits (750), Expect = 5.900e-76
Identity = 186/241 (77.18%), Postives = 202/241 (83.82%), Query Frame = 0 
Query:    2 LISLLSCSLVSGFLV---PSPASAVSPLRASAAVMAATAEPVVEALAGKKPEYVLMEDASGRSINTTMLAFLKQDGKRYCLGTPVDSPMVLMDSGGRPIDPSDELAEKMFYQLDDYFTNKGYEILHTAGFLTIAGDPDWF-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAQAARSAAARGENSVRVDPICDVEFDGSMYRVVQLLDRVPLSAEEDGEGKWRLVSDSETHLGLEKMAKK 239
            L SL+SCSLV  FLV   P       PLR S+AV+A+ +EPVVEALAG+KPEY+LMED  GRSINTTM+A+L+QDGKRYCLGTPVD PMVLMDSGGRPIDPS  LAE MFYQLDDYFTNKGYEILHTAGFLTIAG+PDWF XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX              SVRVDPICDVE+DGSMYR+VQLLDRVPLSAEED EGKW LV+D++THLGLEK AKK
Sbjct:    6 LTSLVSCSLVQAFLVPVAPGMGRPREPLRPSSAVLASASEPVVEALAGRKPEYILMEDGHGRSINTTMIAYLRQDGKRYCLGTPVDCPMVLMDSGGRPIDPSSALAEGMFYQLDDYFTNKGYEILHTAGFLTIAGEPDWFDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVRVDPICDVEYDGSMYRIVQLLDRVPLSAEEDAEGKWVLVNDADTHLGLEKRAKK 246
The following BLAST results are available for this feature:
BLAST of NO10G01450 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM25345.11.600e-7677.59hypothetical protein Naga_100005g107 [Nannochlorop... [more]
XP_005852583.15.900e-7677.18hypothetical protein NGA_0098202 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001016NSK001016Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G01450.1NO10G01450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586401gene_4072Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100005g107gene5133Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G01450.1NO10G01450.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G01450 ID=NO10G01450|Name=NO10G01450|organism=Nannochloropsis oceanica|type=gene|length=717bp
ATGTTGATCAGTTTGCTGTCCTGCAGCCTCGTCAGTGGTTTCCTGGTCCC
GTCCCCTGCCAGTGCCGTATCGCCCCTCCGTGCCTCGGCTGCAGTCATGG
CTGCGACAGCCGAGCCCGTGGTTGAGGCCTTGGCAGGAAAGAAGCCCGAG
TACGTCTTGATGGAAGATGCATCAGGACGGAGCATCAATACAACGATGCT
GGCATTCCTTAAGCAGGACGGTAAGCGGTACTGCTTGGGGACGCCGGTGG
ATAGCCCGATGGTTTTGATGGACTCGGGGGGGCGGCCCATTGACCCTTCG
GATGAATTAGCGGAGAAGATGTTTTACCAGCTGGACGATTATTTTACGAA
TAAGGGTTATGAAATTCTCCATACTGCGGGATTTTTGACCATCGCGGGGG
ATCCGGATTGGTTCGATGATGATGATGTGGTGGACGAGGATGATGTTGAC
AGTGACGACGAATACGACAGCGAGGACGAGGAAGAAGAGGACGCTGGGGA
GGTAGCTGCACAGGCGGCCCGGTCCGCGGCTGCAAGGGGGGAGAACAGTG
TGAGGGTTGATCCAATTTGTGACGTCGAGTTTGATGGGTCGATGTATCGG
GTTGTGCAGTTATTGGACCGGGTGCCTCTGAGCGCGGAGGAGGACGGGGA
GGGAAAGTGGCGATTGGTGAGTGACTCCGAGACACATTTGGGTTTGGAAA
AGATGGCAAAGAAGTAA
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protein sequence of NO10G01450.1

>NO10G01450.1-protein ID=NO10G01450.1-protein|Name=NO10G01450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=239bp
MLISLLSCSLVSGFLVPSPASAVSPLRASAAVMAATAEPVVEALAGKKPE
YVLMEDASGRSINTTMLAFLKQDGKRYCLGTPVDSPMVLMDSGGRPIDPS
DELAEKMFYQLDDYFTNKGYEILHTAGFLTIAGDPDWFDDDDVVDEDDVD
SDDEYDSEDEEEEDAGEVAAQAARSAAARGENSVRVDPICDVEFDGSMYR
VVQLLDRVPLSAEEDGEGKWRLVSDSETHLGLEKMAKK*
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Synonyms
Publications